Wall clock time and date at job start Tue Mar 31 2020 23:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.38498 * 125.83776 * 2 1 4 4 C 1.40123 * 125.92329 * 359.97438 * 3 2 1 5 5 H 1.07997 * 120.00099 * 6.21491 * 4 3 2 6 6 C 1.40038 * 119.99675 * 186.21615 * 4 3 2 7 7 N 1.30793 * 120.00386 * 6.49904 * 6 4 3 8 8 Si 1.86797 * 119.99730 * 186.50218 * 6 4 3 9 9 H 1.48504 * 109.47380 * 84.99040 * 8 6 4 10 10 H 1.48496 * 109.47480 * 324.99008 * 8 6 4 11 11 H 1.48501 * 109.47158 * 204.98742 * 8 6 4 12 12 N 1.32233 * 108.14951 * 180.26427 * 3 2 1 13 13 N 1.40169 * 107.75892 * 359.62009 * 12 3 2 14 14 C 1.46492 * 126.14813 * 180.11427 * 13 12 3 15 15 N 1.46898 * 109.47466 * 270.31338 * 14 13 12 16 16 C 1.46524 * 111.00104 * 43.85857 * 15 14 13 17 17 C 1.53525 * 110.94707 * 183.76089 * 16 15 14 18 18 C 1.52391 * 107.81737 * 302.28725 * 17 16 15 19 19 H 1.08992 * 110.01447 * 300.46265 * 18 17 16 20 20 C 1.54180 * 112.88759 * 177.39055 * 18 17 16 21 21 S 1.83977 * 101.45180 * 197.90594 * 20 18 17 22 22 C 1.83619 * 97.38970 * 23.20857 * 21 20 18 23 23 C 1.53181 * 103.87065 * 3.83982 * 22 21 20 24 24 H 1.09002 * 108.97387 * 86.63628 * 23 22 21 25 25 C 1.47399 * 110.99947 * 169.99866 * 15 14 13 26 26 C 1.34725 * 125.83406 * 180.02562 * 2 1 3 27 27 S 1.71204 * 125.97274 * 0.02562 * 26 2 1 28 28 H 1.08996 * 109.47184 * 90.00048 * 1 2 3 29 29 H 1.09005 * 109.47149 * 210.00392 * 1 2 3 30 30 H 1.09001 * 109.46972 * 330.00277 * 1 2 3 31 31 H 0.96993 * 120.00500 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47224 * 30.31478 * 14 13 12 33 33 H 1.09001 * 109.47300 * 150.31107 * 14 13 12 34 34 H 1.09003 * 109.18259 * 304.14540 * 16 15 14 35 35 H 1.09000 * 109.17969 * 63.38782 * 16 15 14 36 36 H 1.08997 * 109.79621 * 182.70284 * 17 16 15 37 37 H 1.09004 * 109.78801 * 61.86111 * 17 16 15 38 38 H 1.09002 * 111.02713 * 79.86564 * 20 18 17 39 39 H 1.09001 * 111.03371 * 315.95758 * 20 18 17 40 40 H 1.09003 * 110.54659 * 245.24226 * 22 21 20 41 41 H 1.09000 * 110.67026 * 122.49336 * 22 21 20 42 42 H 1.08998 * 109.75768 * 294.51700 * 25 15 14 43 43 H 1.08998 * 109.75655 * 55.21998 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 -0.0005 5 1 0.7853 2.6755 0.1003 6 6 2.7634 3.4959 -0.1318 7 7 4.0190 3.2277 -0.3809 8 14 2.2053 5.2693 0.0491 9 1 2.2023 5.6433 1.4863 10 1 0.8347 5.4158 -0.5032 11 1 3.1352 6.1589 -0.6918 12 7 3.5357 0.7210 -0.0058 13 7 3.5375 -0.6807 -0.0007 14 6 4.7215 -1.5433 -0.0021 15 7 5.1166 -1.8306 -1.3875 16 6 5.0642 -0.6194 -2.2104 17 6 5.3867 -0.9380 -3.6771 18 6 6.7670 -1.5824 -3.7217 19 1 7.5104 -0.9009 -3.3083 20 6 7.1832 -2.0108 -5.1431 21 16 8.5433 -3.1964 -4.7837 22 6 8.0330 -3.6302 -3.0741 23 6 6.7156 -2.8729 -2.8808 24 1 5.8957 -3.4871 -3.2532 25 6 6.4322 -2.4935 -1.4349 26 6 2.2538 -1.0922 -0.0005 27 16 1.7192 -2.7187 -0.0018 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 4.6605 3.9495 -0.4715 32 1 5.5395 -1.0384 0.5117 33 1 4.4914 -2.4770 0.5112 34 1 4.0652 -0.1875 -2.1489 35 1 5.7891 0.1017 -1.8327 36 1 5.3896 -0.0186 -4.2626 37 1 4.6440 -1.6285 -4.0767 38 1 7.5482 -1.1591 -5.7171 39 1 6.3601 -2.5046 -5.6596 40 1 8.7783 -3.2911 -2.3546 41 1 7.8738 -4.7045 -2.9810 42 1 7.2021 -1.8106 -1.0756 43 1 6.4159 -3.3895 -0.8145 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872720062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:54 Heat of formation + Delta-G solvation = 70.871919 kcal Electronic energy + Delta-G solvation = -25991.829479 eV Core-core repulsion = 22518.072761 eV Total energy + Delta-G solvation = -3473.756718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71335 -40.62275 -37.21845 -35.79928 -35.00522 -33.27907 -32.49340 -30.28642 -28.94150 -28.30988 -27.41041 -25.81927 -23.74686 -23.19524 -22.71628 -22.24351 -20.95308 -19.45417 -18.42386 -17.79215 -17.44500 -17.34285 -16.63319 -16.61388 -16.34680 -15.98763 -15.78060 -15.52230 -15.09405 -14.69243 -14.58660 -14.06722 -13.89977 -13.76410 -13.48290 -13.39949 -13.33991 -13.27786 -13.01166 -12.95263 -12.70387 -12.44643 -12.18564 -12.01493 -11.90759 -11.79095 -11.69884 -11.42949 -11.39669 -11.04893 -10.80874 -10.68562 -9.42353 -8.82036 -8.74937 -8.63999 -8.56626 -6.97726 0.50881 0.80545 0.81864 1.26326 1.32055 1.44431 1.58435 1.65219 1.83993 2.11685 2.40174 2.71634 3.07224 3.44811 3.47744 3.57543 3.64748 3.91608 4.03486 4.11468 4.14112 4.20314 4.27483 4.29464 4.39711 4.44743 4.46626 4.55762 4.59351 4.67325 4.70304 4.74268 4.78877 4.88004 4.92119 4.97738 5.03564 5.08529 5.25117 5.26476 5.65143 5.76804 5.94169 6.17669 6.46706 6.55570 7.30332 8.21553 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012394 B = 0.003712 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.544270 B = 7541.671868 C = 9147.260560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.518 5.518 3 C 0.357 3.643 4 C -0.453 4.453 5 H 0.117 0.883 6 C 0.041 3.959 7 N -0.773 5.773 8 Si 1.002 2.998 9 H -0.263 1.263 10 H -0.247 1.247 11 H -0.272 1.272 12 N -0.370 5.370 13 N -0.379 5.379 14 C 0.330 3.670 15 N -0.556 5.556 16 C 0.083 3.917 17 C -0.090 4.090 18 C -0.088 4.088 19 H 0.081 0.919 20 C -0.048 4.048 21 S -0.337 6.337 22 C -0.045 4.045 23 C -0.085 4.085 24 H 0.081 0.919 25 C 0.080 3.920 26 C 0.469 3.531 27 S -0.733 6.733 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.291 0.709 32 H 0.068 0.932 33 H 0.113 0.887 34 H 0.039 0.961 35 H 0.020 0.980 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.047 0.953 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.642 -0.811 -4.515 7.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.219 5.219 3 C 0.109 3.891 4 C -0.494 4.494 5 H 0.135 0.865 6 C -0.182 4.182 7 N -0.398 5.398 8 Si 0.821 3.179 9 H -0.188 1.188 10 H -0.171 1.171 11 H -0.197 1.197 12 N -0.203 5.203 13 N -0.165 5.165 14 C 0.119 3.881 15 N -0.283 5.283 16 C -0.045 4.045 17 C -0.130 4.130 18 C -0.108 4.108 19 H 0.099 0.901 20 C -0.196 4.196 21 S -0.110 6.110 22 C -0.193 4.193 23 C -0.105 4.105 24 H 0.099 0.901 25 C -0.048 4.048 26 C 0.099 3.901 27 S -0.610 6.610 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.057 0.943 35 H 0.039 0.961 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.131 0.869 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.065 0.935 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.248 -2.151 -5.437 9.312 hybrid contribution -1.091 2.152 1.114 2.658 sum 6.157 0.001 -4.322 7.523 Atomic orbital electron populations 1.22027 0.73136 1.05264 1.04194 1.46281 1.09681 1.04175 1.61754 1.21641 0.84398 0.89326 0.93748 1.18886 0.97416 0.85472 1.47632 0.86472 1.26788 0.93980 1.05950 0.91523 1.69931 1.03911 1.37099 1.28839 0.84881 0.79750 0.73826 0.79420 1.18777 1.17058 1.19699 1.79270 1.15014 0.83120 1.42899 1.49344 1.04021 1.06824 1.56275 1.21903 0.82730 0.92423 0.91056 1.61683 1.30317 1.27487 1.08826 1.21679 0.99730 0.89532 0.93597 1.21413 0.95982 1.01067 0.94527 1.22054 0.97476 0.97396 0.93824 0.90100 1.24084 0.97283 0.99352 0.98863 1.87772 1.41968 1.59474 1.21741 1.23720 0.98357 1.03973 0.93245 1.21643 0.97381 0.95910 0.95583 0.90095 1.21888 0.87016 0.99229 0.96684 1.22853 0.85355 0.92286 0.89654 1.92692 1.85294 1.00390 1.82595 0.90264 0.89209 0.87437 0.89782 0.91480 0.86938 0.94261 0.96140 0.90421 0.91512 0.86906 0.88484 0.87673 0.86999 0.93480 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.23 10.67 127.77 1.36 4.59 16 2 N -0.52 -22.80 3.17 -548.29 -1.74 -24.53 16 3 C 0.36 16.89 7.47 133.53 1.00 17.89 16 4 C -0.45 -19.89 8.99 23.16 0.21 -19.68 16 5 H 0.12 4.50 7.08 -2.91 -0.02 4.48 16 6 C 0.04 1.74 5.49 85.28 0.47 2.21 16 7 N -0.77 -35.58 11.96 21.84 0.26 -35.32 16 8 Si 1.00 31.42 29.57 68.60 2.03 33.45 16 9 H -0.26 -8.16 7.11 99.48 0.71 -7.45 16 10 H -0.25 -7.25 7.11 99.48 0.71 -6.54 16 11 H -0.27 -8.41 7.11 99.48 0.71 -7.70 16 12 N -0.37 -18.11 9.62 -55.17 -0.53 -18.64 16 13 N -0.38 -17.03 2.57 -359.74 -0.92 -17.96 16 14 C 0.33 12.29 6.27 170.81 1.07 13.36 16 15 N -0.56 -18.50 4.81 -908.90 -4.37 -22.87 16 16 C 0.08 2.97 4.85 86.55 0.42 3.39 16 17 C -0.09 -2.52 5.63 30.57 0.17 -2.35 16 18 C -0.09 -1.98 2.23 -10.22 -0.02 -2.01 16 19 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 20 C -0.05 -0.96 6.87 72.38 0.50 -0.46 16 21 S -0.34 -7.38 23.28 -56.49 -1.31 -8.69 16 22 C -0.04 -0.82 6.92 72.04 0.50 -0.32 16 23 C -0.09 -1.86 2.17 -10.64 -0.02 -1.89 16 24 H 0.08 2.01 8.11 -2.39 -0.02 1.99 16 25 C 0.08 1.95 5.01 85.93 0.43 2.38 16 26 C 0.47 21.94 7.84 179.06 1.40 23.34 16 27 S -0.73 -35.80 29.50 -56.49 -1.67 -37.47 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 3.05 7.62 -2.38 -0.02 3.03 16 30 H 0.11 3.08 7.27 -2.39 -0.02 3.06 16 31 H 0.29 12.19 8.29 -92.71 -0.77 11.42 16 32 H 0.07 2.38 8.08 -2.39 -0.02 2.36 16 33 H 0.11 4.16 7.65 -2.39 -0.02 4.14 16 34 H 0.04 1.77 6.30 -2.39 -0.02 1.75 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.10 1.70 8.06 -2.39 -0.02 1.68 16 41 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -61.70 366.05 0.24 -61.46 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 1.01 Total: 30.12 kcal Atomic # 6 Polarization: 32.97 SS G_CDS: 7.48 Total: 40.45 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -7.30 Total: -119.32 kcal Atomic # 14 Polarization: 31.42 SS G_CDS: 2.03 Total: 33.45 kcal Atomic # 16 Polarization: -43.18 SS G_CDS: -2.98 Total: -46.16 kcal Total: -61.70 0.24 -61.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872720062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.334 kcal (2) G-P(sol) polarization free energy of solvation -61.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds