Wall clock time and date at job start Tue Mar 31 2020 23:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38502 * 125.84069 * 2 1 4 4 C 1.40119 * 125.92106 * 359.76003 * 3 2 1 5 5 H 1.07993 * 120.00174 * 354.07759 * 4 3 2 6 6 C 1.40045 * 119.99363 * 174.07321 * 4 3 2 7 7 N 1.30791 * 120.00353 * 6.02413 * 6 4 3 8 8 Si 1.86802 * 119.99378 * 186.01926 * 6 4 3 9 9 H 1.48496 * 109.47221 * 94.98753 * 8 6 4 10 10 H 1.48506 * 109.46730 * 214.98415 * 8 6 4 11 11 H 1.48497 * 109.47573 * 334.98464 * 8 6 4 12 12 N 1.32235 * 108.14901 * 179.73881 * 3 2 1 13 13 N 1.40170 * 107.76074 * 0.02562 * 12 3 2 14 14 C 1.46499 * 126.14549 * 179.97438 * 13 12 3 15 15 N 1.46895 * 109.47451 * 90.02184 * 14 13 12 16 16 C 1.46528 * 111.00062 * 66.04299 * 15 14 13 17 17 C 1.53557 * 110.91471 * 176.21886 * 16 15 14 18 18 C 1.52252 * 107.82781 * 57.41298 * 17 16 15 19 19 H 1.08994 * 109.05038 * 58.22306 * 18 17 16 20 20 C 1.53187 * 113.70562 * 179.24811 * 18 17 16 21 21 S 1.83615 * 103.87869 * 151.21084 * 20 18 17 22 22 C 1.83989 * 97.38816 * 356.15118 * 21 20 18 23 23 C 1.54113 * 108.21238 * 299.77883 * 18 17 16 24 24 H 1.09001 * 109.78398 * 303.96968 * 23 18 17 25 25 C 1.47373 * 111.00083 * 299.85951 * 15 14 13 26 26 C 1.34732 * 125.83396 * 179.69495 * 2 1 3 27 27 S 1.71208 * 125.96763 * 0.24097 * 26 2 1 28 28 H 1.09001 * 109.47162 * 89.99089 * 1 2 3 29 29 H 1.08993 * 109.47312 * 209.99875 * 1 2 3 30 30 H 1.09008 * 109.46645 * 329.99974 * 1 2 3 31 31 H 0.97000 * 120.00450 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46713 * 210.02067 * 14 13 12 33 33 H 1.08998 * 109.47113 * 330.01519 * 14 13 12 34 34 H 1.08999 * 109.19238 * 296.59186 * 16 15 14 35 35 H 1.08999 * 109.18934 * 55.90115 * 16 15 14 36 36 H 1.08997 * 109.78754 * 176.99185 * 17 16 15 37 37 H 1.08999 * 109.78870 * 297.77305 * 17 16 15 38 38 H 1.09001 * 110.54585 * 269.80632 * 20 18 17 39 39 H 1.09005 * 110.54975 * 32.61471 * 20 18 17 40 40 H 1.09006 * 111.02873 * 218.76415 * 22 21 20 41 41 H 1.08998 * 111.02814 * 94.84250 * 22 21 20 42 42 H 1.08999 * 109.75790 * 305.05311 * 25 15 14 43 43 H 1.09004 * 109.76467 * 65.81359 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 -0.0048 5 1 0.7852 2.6750 -0.1054 6 6 2.7637 3.4964 0.1211 7 7 4.0454 3.2358 0.1245 8 14 2.1685 5.2595 0.2839 9 1 2.0941 5.6261 1.7210 10 1 3.1163 6.1679 -0.4102 11 1 0.8221 5.3862 -0.3296 12 7 3.5357 0.7209 0.0057 13 7 3.5374 -0.6808 0.0089 14 6 4.7215 -1.5434 0.0148 15 7 5.1123 -1.8291 1.4017 16 6 4.0919 -2.6329 2.0798 17 6 4.5440 -3.0095 3.4982 18 6 4.8370 -1.7195 4.2520 19 1 3.9396 -1.1011 4.2610 20 6 5.2850 -1.9405 5.7001 21 16 6.3594 -0.4943 6.0543 22 6 6.3101 0.2542 4.3743 23 6 5.9564 -0.9687 3.5048 24 1 6.8291 -1.6138 3.4030 25 6 5.4326 -0.5868 2.1268 26 6 2.2537 -1.0923 0.0058 27 16 1.7190 -2.7187 0.0086 28 1 -0.3633 0.0002 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 4.6870 3.9580 0.2120 32 1 4.4928 -2.4777 -0.4980 33 1 5.5410 -1.0391 -0.4971 34 1 3.1660 -2.0609 2.1390 35 1 3.9144 -3.5435 1.5076 36 1 3.7513 -3.5605 4.0041 37 1 5.4447 -3.6214 3.4482 38 1 4.4247 -1.9509 6.3693 39 1 5.8508 -2.8681 5.7882 40 1 7.2829 0.6617 4.0989 41 1 5.5352 1.0179 4.3090 42 1 6.1960 -0.0296 1.5837 43 1 4.5343 0.0221 2.2297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872720105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:00 Heat of formation + Delta-G solvation = 77.047780 kcal Electronic energy + Delta-G solvation = -26568.210359 eV Core-core repulsion = 23094.721447 eV Total energy + Delta-G solvation = -3473.488912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.08261 -39.32078 -35.85621 -34.14583 -33.45469 -32.02813 -30.77844 -28.99779 -27.47131 -26.74679 -26.22843 -24.45385 -22.15797 -21.98706 -21.08028 -20.83982 -19.74741 -17.86599 -16.83608 -16.41583 -16.02870 -15.81205 -15.24741 -15.19331 -14.83550 -14.67094 -14.59908 -14.05810 -13.88432 -13.55341 -13.04319 -12.72103 -12.66491 -12.30266 -12.21232 -12.12195 -11.95261 -11.89951 -11.63753 -11.56980 -11.17559 -10.95331 -10.73980 -10.70460 -10.60429 -10.55274 -10.27511 -10.12136 -9.84725 -9.65438 -9.29717 -8.96721 -8.41779 -7.72604 -7.15747 -6.87170 -6.73840 -5.24513 1.81460 2.22302 2.33361 2.48229 2.70251 2.84722 2.88422 3.31819 3.42381 3.56910 4.00794 4.07586 4.54484 4.61473 4.71685 4.73132 5.05802 5.14455 5.22630 5.30562 5.42075 5.47043 5.49754 5.53970 5.60227 5.75232 5.76186 5.82661 5.84496 5.96375 5.99899 6.04600 6.08730 6.21889 6.27263 6.41461 6.45333 6.52430 6.70211 6.89859 7.10349 7.26230 7.47371 7.66187 8.12791 8.25101 9.03223 9.81776 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.005113 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.259142 B = 5474.703921 C = 7475.227709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.515 5.515 3 C 0.373 3.627 4 C -0.438 4.438 5 H 0.097 0.903 6 C 0.078 3.922 7 N -0.735 5.735 8 Si 0.926 3.074 9 H -0.266 1.266 10 H -0.272 1.272 11 H -0.259 1.259 12 N -0.341 5.341 13 N -0.401 5.401 14 C 0.313 3.687 15 N -0.536 5.536 16 C 0.058 3.942 17 C -0.100 4.100 18 C -0.100 4.100 19 H 0.073 0.927 20 C -0.057 4.057 21 S -0.314 6.314 22 C -0.055 4.055 23 C -0.088 4.088 24 H 0.092 0.908 25 C 0.076 3.924 26 C 0.464 3.536 27 S -0.711 6.711 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.286 0.714 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 -1.802 5.455 6.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.216 5.216 3 C 0.124 3.876 4 C -0.479 4.479 5 H 0.115 0.885 6 C -0.149 4.149 7 N -0.359 5.359 8 Si 0.749 3.251 9 H -0.191 1.191 10 H -0.197 1.197 11 H -0.182 1.182 12 N -0.173 5.173 13 N -0.191 5.191 14 C 0.103 3.897 15 N -0.261 5.261 16 C -0.070 4.070 17 C -0.139 4.139 18 C -0.119 4.119 19 H 0.092 0.908 20 C -0.205 4.205 21 S -0.087 6.087 22 C -0.203 4.203 23 C -0.108 4.108 24 H 0.110 0.890 25 C -0.054 4.054 26 C 0.095 3.905 27 S -0.587 6.587 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.602 -2.344 6.500 8.302 hybrid contribution -2.054 1.663 -0.930 2.802 sum 2.548 -0.681 5.570 6.163 Atomic orbital electron populations 1.21760 0.75509 1.04147 1.03002 1.46037 1.08267 1.05067 1.62223 1.21299 0.84181 0.88481 0.93611 1.18367 0.95982 0.85668 1.47918 0.88541 1.25813 0.94307 1.01844 0.92912 1.69860 1.01703 1.35226 1.29147 0.85979 0.79934 0.79649 0.79527 1.19114 1.19691 1.18241 1.79367 1.13882 0.82597 1.41474 1.50472 1.04244 1.07726 1.56633 1.22496 0.83377 0.93071 0.90759 1.62157 1.42273 1.19111 1.02513 1.22364 0.92365 0.98534 0.93741 1.21526 1.01784 0.95545 0.95053 1.21832 0.99335 0.98842 0.91931 0.90828 1.23797 1.00357 0.97533 0.98815 1.87575 1.67852 1.32213 1.21011 1.24065 1.05633 0.99578 0.91047 1.22089 0.98762 0.95015 0.94964 0.88991 1.21881 1.00998 0.90516 0.91967 1.23065 0.85257 0.92485 0.89706 1.92770 1.85351 0.98822 1.81755 0.91497 0.89214 0.89800 0.90326 0.86997 0.87675 0.93709 0.88728 0.91023 0.90991 0.88904 0.88943 0.87845 0.88975 0.89916 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 10.63 59.84 0.64 2.33 16 2 N -0.52 -11.04 3.17 -124.66 -0.39 -11.44 16 3 C 0.37 8.65 7.49 -155.27 -1.16 7.49 16 4 C -0.44 -9.73 8.94 -38.20 -0.34 -10.07 16 5 H 0.10 1.95 7.21 -52.49 -0.38 1.57 16 6 C 0.08 1.67 5.49 -17.32 -0.10 1.58 16 7 N -0.74 -16.69 11.93 55.55 0.66 -16.02 16 8 Si 0.93 16.01 29.57 -169.99 -5.03 10.99 16 9 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 10 H -0.27 -4.69 7.11 56.52 0.40 -4.28 16 11 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 12 N -0.34 -7.98 9.89 31.21 0.31 -7.68 16 13 N -0.40 -8.46 2.90 -65.05 -0.19 -8.65 16 14 C 0.31 5.55 6.23 -63.32 -0.39 5.16 16 15 N -0.54 -8.62 4.78 -238.54 -1.14 -9.76 16 16 C 0.06 0.94 4.06 -3.74 -0.02 0.93 16 17 C -0.10 -1.32 5.64 -26.82 -0.15 -1.47 16 18 C -0.10 -1.33 2.07 -90.32 -0.19 -1.52 16 19 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 20 C -0.06 -0.68 6.92 37.25 0.26 -0.42 16 21 S -0.31 -4.26 23.28 -107.50 -2.50 -6.76 16 22 C -0.05 -0.73 6.87 37.77 0.26 -0.47 16 23 C -0.09 -1.20 2.31 -89.79 -0.21 -1.41 16 24 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 25 C 0.08 1.22 4.60 -3.93 -0.02 1.20 16 26 C 0.46 10.24 6.63 -86.93 -0.58 9.66 16 27 S -0.71 -16.07 27.01 -107.50 -2.90 -18.97 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.52 7.61 -51.93 -0.40 1.13 16 30 H 0.08 1.27 7.40 -51.92 -0.38 0.89 16 31 H 0.29 5.90 8.30 -40.82 -0.34 5.56 16 32 H 0.11 1.97 7.58 -51.93 -0.39 1.58 16 33 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 34 H 0.04 0.89 6.01 -51.93 -0.31 0.58 16 35 H 0.09 1.65 7.50 -51.93 -0.39 1.26 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.09 0.99 8.06 -51.93 -0.42 0.57 16 40 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.05 1.09 7.09 -51.93 -0.37 0.72 16 LS Contribution 359.91 15.07 5.42 5.42 Total: -1.00 -26.60 359.91 -14.16 -40.76 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.40 Total: 9.13 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -2.00 Total: 12.99 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.75 Total: -53.55 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.03 Total: 10.99 kcal Atomic # 16 Polarization: -20.33 SS G_CDS: -5.41 Total: -25.74 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -26.60 -14.16 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872720105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.805 kcal (2) G-P(sol) polarization free energy of solvation -26.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds