Wall clock time and date at job start Tue Mar 31 2020 23:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38502 * 125.84069 * 2 1 4 4 C 1.40119 * 125.92106 * 359.76003 * 3 2 1 5 5 H 1.07993 * 120.00174 * 354.07759 * 4 3 2 6 6 C 1.40045 * 119.99363 * 174.07321 * 4 3 2 7 7 N 1.30791 * 120.00353 * 6.02413 * 6 4 3 8 8 Si 1.86802 * 119.99378 * 186.01926 * 6 4 3 9 9 H 1.48496 * 109.47221 * 94.98753 * 8 6 4 10 10 H 1.48506 * 109.46730 * 214.98415 * 8 6 4 11 11 H 1.48497 * 109.47573 * 334.98464 * 8 6 4 12 12 N 1.32235 * 108.14901 * 179.73881 * 3 2 1 13 13 N 1.40170 * 107.76074 * 0.02562 * 12 3 2 14 14 C 1.46499 * 126.14549 * 179.97438 * 13 12 3 15 15 N 1.46895 * 109.47451 * 90.02184 * 14 13 12 16 16 C 1.46528 * 111.00062 * 66.04299 * 15 14 13 17 17 C 1.53557 * 110.91471 * 176.21886 * 16 15 14 18 18 C 1.52252 * 107.82781 * 57.41298 * 17 16 15 19 19 H 1.08994 * 109.05038 * 58.22306 * 18 17 16 20 20 C 1.53187 * 113.70562 * 179.24811 * 18 17 16 21 21 S 1.83615 * 103.87869 * 151.21084 * 20 18 17 22 22 C 1.83989 * 97.38816 * 356.15118 * 21 20 18 23 23 C 1.54113 * 108.21238 * 299.77883 * 18 17 16 24 24 H 1.09001 * 109.78398 * 303.96968 * 23 18 17 25 25 C 1.47373 * 111.00083 * 299.85951 * 15 14 13 26 26 C 1.34732 * 125.83396 * 179.69495 * 2 1 3 27 27 S 1.71208 * 125.96763 * 0.24097 * 26 2 1 28 28 H 1.09001 * 109.47162 * 89.99089 * 1 2 3 29 29 H 1.08993 * 109.47312 * 209.99875 * 1 2 3 30 30 H 1.09008 * 109.46645 * 329.99974 * 1 2 3 31 31 H 0.97000 * 120.00450 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.46713 * 210.02067 * 14 13 12 33 33 H 1.08998 * 109.47113 * 330.01519 * 14 13 12 34 34 H 1.08999 * 109.19238 * 296.59186 * 16 15 14 35 35 H 1.08999 * 109.18934 * 55.90115 * 16 15 14 36 36 H 1.08997 * 109.78754 * 176.99185 * 17 16 15 37 37 H 1.08999 * 109.78870 * 297.77305 * 17 16 15 38 38 H 1.09001 * 110.54585 * 269.80632 * 20 18 17 39 39 H 1.09005 * 110.54975 * 32.61471 * 20 18 17 40 40 H 1.09006 * 111.02873 * 218.76415 * 22 21 20 41 41 H 1.08998 * 111.02814 * 94.84250 * 22 21 20 42 42 H 1.08999 * 109.75790 * 305.05311 * 25 15 14 43 43 H 1.09004 * 109.76467 * 65.81359 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2759 1.1228 0.0000 4 6 1.8374 2.4536 -0.0048 5 1 0.7852 2.6750 -0.1054 6 6 2.7637 3.4964 0.1211 7 7 4.0454 3.2358 0.1245 8 14 2.1685 5.2595 0.2839 9 1 2.0941 5.6261 1.7210 10 1 3.1163 6.1679 -0.4102 11 1 0.8221 5.3862 -0.3296 12 7 3.5357 0.7209 0.0057 13 7 3.5374 -0.6808 0.0089 14 6 4.7215 -1.5434 0.0148 15 7 5.1123 -1.8291 1.4017 16 6 4.0919 -2.6329 2.0798 17 6 4.5440 -3.0095 3.4982 18 6 4.8370 -1.7195 4.2520 19 1 3.9396 -1.1011 4.2610 20 6 5.2850 -1.9405 5.7001 21 16 6.3594 -0.4943 6.0543 22 6 6.3101 0.2542 4.3743 23 6 5.9564 -0.9687 3.5048 24 1 6.8291 -1.6138 3.4030 25 6 5.4326 -0.5868 2.1268 26 6 2.2537 -1.0923 0.0058 27 16 1.7190 -2.7187 0.0086 28 1 -0.3633 0.0002 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 4.6870 3.9580 0.2120 32 1 4.4928 -2.4777 -0.4980 33 1 5.5410 -1.0391 -0.4971 34 1 3.1660 -2.0609 2.1390 35 1 3.9144 -3.5435 1.5076 36 1 3.7513 -3.5605 4.0041 37 1 5.4447 -3.6214 3.4482 38 1 4.4247 -1.9509 6.3693 39 1 5.8508 -2.8681 5.7882 40 1 7.2829 0.6617 4.0989 41 1 5.5352 1.0179 4.3090 42 1 6.1960 -0.0296 1.5837 43 1 4.5343 0.0221 2.2297 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872720105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:00 Heat of formation + Delta-G solvation = 65.251282 kcal Electronic energy + Delta-G solvation = -26568.721894 eV Core-core repulsion = 23094.721447 eV Total energy + Delta-G solvation = -3474.000447 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.73777 -40.60718 -37.25471 -35.78646 -34.94796 -33.22390 -32.41727 -30.33617 -28.84705 -28.29810 -27.61884 -25.86254 -23.65049 -23.25835 -22.61201 -22.32730 -20.97665 -19.50139 -18.45826 -17.56954 -17.51911 -17.44311 -16.69244 -16.59148 -16.26552 -16.03976 -15.89474 -15.37937 -15.14987 -15.00109 -14.32883 -13.97177 -13.90723 -13.70758 -13.55485 -13.46649 -13.36049 -13.12235 -13.00758 -12.97053 -12.67669 -12.44207 -12.22206 -12.01372 -11.92502 -11.80390 -11.65064 -11.46658 -11.37830 -10.97584 -10.88355 -10.64900 -9.87869 -8.81329 -8.80001 -8.63723 -8.50009 -6.97603 0.53106 0.75885 0.79955 1.24825 1.27137 1.42364 1.56765 1.69378 1.82897 2.10132 2.41353 2.69918 3.05657 3.42373 3.48090 3.50828 3.67427 3.95730 4.04068 4.09664 4.15333 4.25369 4.29011 4.36269 4.40504 4.43334 4.49408 4.52326 4.56254 4.65751 4.73986 4.77302 4.78610 4.90335 4.92999 5.04150 5.06677 5.07579 5.24441 5.26959 5.66537 5.80757 5.93532 6.01322 6.45795 6.55661 7.31117 8.21252 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009517 B = 0.005113 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.259142 B = 5474.703921 C = 7475.227709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.519 5.519 3 C 0.352 3.648 4 C -0.454 4.454 5 H 0.113 0.887 6 C 0.040 3.960 7 N -0.769 5.769 8 Si 0.998 3.002 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.248 1.248 12 N -0.363 5.363 13 N -0.395 5.395 14 C 0.307 3.693 15 N -0.520 5.520 16 C 0.068 3.932 17 C -0.090 4.090 18 C -0.092 4.092 19 H 0.045 0.955 20 C -0.046 4.046 21 S -0.329 6.329 22 C -0.050 4.050 23 C -0.079 4.079 24 H 0.106 0.894 25 C 0.088 3.912 26 C 0.454 3.546 27 S -0.732 6.732 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.292 0.708 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.007 0.993 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.819 -1.508 6.337 7.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.219 5.219 3 C 0.103 3.897 4 C -0.495 4.495 5 H 0.131 0.869 6 C -0.184 4.184 7 N -0.393 5.393 8 Si 0.818 3.182 9 H -0.191 1.191 10 H -0.195 1.195 11 H -0.171 1.171 12 N -0.196 5.196 13 N -0.185 5.185 14 C 0.097 3.903 15 N -0.244 5.244 16 C -0.060 4.060 17 C -0.129 4.129 18 C -0.112 4.112 19 H 0.064 0.936 20 C -0.194 4.194 21 S -0.102 6.102 22 C -0.199 4.199 23 C -0.099 4.099 24 H 0.124 0.876 25 C -0.041 4.041 26 C 0.083 3.917 27 S -0.608 6.608 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.025 0.975 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 4.814 -2.073 7.384 9.055 hybrid contribution -2.115 1.574 -1.222 2.906 sum 2.699 -0.499 6.162 6.745 Atomic orbital electron populations 1.21998 0.73436 1.05070 1.04166 1.46303 1.09619 1.04356 1.61650 1.21657 0.84589 0.89313 0.94106 1.18849 0.97152 0.85623 1.47878 0.86873 1.26746 0.94143 1.05606 0.91861 1.69938 1.02980 1.36791 1.29616 0.84908 0.79757 0.74260 0.79300 1.19074 1.19477 1.17099 1.79288 1.14653 0.83631 1.42028 1.50731 1.04719 1.07307 1.55724 1.22744 0.82839 0.92785 0.91931 1.62218 1.41546 1.18789 1.01800 1.22219 0.90911 0.97233 0.95675 1.21485 1.03029 0.95696 0.92735 1.21726 0.97999 0.98302 0.93196 0.93628 1.23813 1.00633 0.97501 0.97404 1.87653 1.68230 1.33307 1.20976 1.23995 1.05758 0.99009 0.91110 1.22021 0.99141 0.95452 0.93297 0.87615 1.21703 0.98985 0.89834 0.93575 1.23082 0.85755 0.92467 0.90371 1.92673 1.85577 0.99619 1.82913 0.90148 0.89295 0.87835 0.89768 0.86860 0.86882 0.97474 0.89685 0.89795 0.88915 0.87900 0.86722 0.86529 0.90721 0.90423 0.96822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.22 10.63 127.77 1.36 4.57 16 2 N -0.52 -22.53 3.17 -548.31 -1.74 -24.26 16 3 C 0.35 16.59 7.49 133.52 1.00 17.59 16 4 C -0.45 -20.08 8.94 23.17 0.21 -19.87 16 5 H 0.11 4.45 7.21 -2.91 -0.02 4.43 16 6 C 0.04 1.71 5.49 85.29 0.47 2.18 16 7 N -0.77 -35.24 11.93 21.84 0.26 -34.98 16 8 Si 1.00 31.91 29.57 68.60 2.03 33.94 16 9 H -0.27 -8.44 7.11 99.48 0.71 -7.74 16 10 H -0.27 -8.49 7.11 99.48 0.71 -7.78 16 11 H -0.25 -7.44 7.11 99.48 0.71 -6.73 16 12 N -0.36 -17.48 9.89 -55.17 -0.55 -18.03 16 13 N -0.39 -17.15 2.90 -359.73 -1.04 -18.20 16 14 C 0.31 11.09 6.23 170.81 1.06 12.16 16 15 N -0.52 -16.82 4.78 -908.61 -4.35 -21.16 16 16 C 0.07 2.22 4.06 86.56 0.35 2.57 16 17 C -0.09 -2.25 5.64 30.53 0.17 -2.08 16 18 C -0.09 -2.37 2.07 -10.60 -0.02 -2.39 16 19 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 20 C -0.05 -0.98 6.92 72.04 0.50 -0.49 16 21 S -0.33 -8.41 23.28 -56.49 -1.31 -9.73 16 22 C -0.05 -1.31 6.87 72.38 0.50 -0.81 16 23 C -0.08 -2.09 2.31 -10.26 -0.02 -2.12 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 C 0.09 2.91 4.60 85.98 0.40 3.31 16 26 C 0.45 20.47 6.63 179.06 1.19 21.65 16 27 S -0.73 -33.50 27.01 -56.49 -1.53 -35.03 16 28 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.09 3.01 7.61 -2.39 -0.02 2.99 16 30 H 0.10 3.04 7.40 -2.38 -0.02 3.02 16 31 H 0.29 12.13 8.30 -92.71 -0.77 11.36 16 32 H 0.11 4.06 7.58 -2.39 -0.02 4.05 16 33 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 34 H 0.01 0.28 6.01 -2.39 -0.01 0.27 16 35 H 0.08 2.96 7.50 -2.39 -0.02 2.95 16 36 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.11 2.03 8.06 -2.38 -0.02 2.01 16 40 H 0.12 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 43 H 0.01 0.56 7.09 -2.39 -0.02 0.55 16 Total: -1.00 -58.06 359.91 -0.05 -58.11 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 1.01 Total: 33.07 kcal Atomic # 6 Polarization: 29.11 SS G_CDS: 7.16 Total: 36.27 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -7.41 Total: -116.64 kcal Atomic # 14 Polarization: 31.91 SS G_CDS: 2.03 Total: 33.94 kcal Atomic # 16 Polarization: -41.91 SS G_CDS: -2.84 Total: -44.75 kcal Total: -58.06 -0.05 -58.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872720105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.365 kcal (2) G-P(sol) polarization free energy of solvation -58.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds