Wall clock time and date at job start Tue Mar 31 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00457 * 2 1 4 4 H 1.09009 * 109.50882 * 310.10273 * 3 2 1 5 5 C 1.53294 * 109.51622 * 190.00464 * 3 2 1 6 6 N 1.47152 * 108.38611 * 187.72444 * 5 3 2 7 7 C 1.34781 * 120.98246 * 230.51165 * 6 5 3 8 8 O 1.21587 * 119.99976 * 185.23152 * 7 6 5 9 9 N 1.34782 * 119.99673 * 5.23283 * 7 6 5 10 10 C 1.40132 * 119.99709 * 184.47348 * 9 7 6 11 11 C 1.38698 * 120.07479 * 325.44334 * 10 9 7 12 12 C 1.38199 * 120.02195 * 180.02562 * 11 10 9 13 13 C 1.38543 * 120.17517 * 359.95377 * 12 11 10 14 14 F 1.35096 * 119.92504 * 180.02562 * 13 12 11 15 15 C 1.38350 * 120.15005 * 0.02562 * 13 12 11 16 16 C 1.38737 * 119.97693 * 0.02562 * 15 13 12 17 17 O 1.35779 * 120.08744 * 180.02562 * 16 15 13 18 18 C 1.34811 * 116.99927 * 354.53317 * 17 16 15 19 19 H 1.08000 * 120.00001 * 5.06252 * 18 17 16 20 20 C 1.38629 * 120.00028 * 185.05544 * 18 17 16 21 21 N 1.31575 * 120.00071 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00121 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47068 * 60.00311 * 22 20 18 24 24 H 1.48500 * 109.47068 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46990 * 300.00235 * 22 20 18 26 26 C 1.47148 * 118.03673 * 50.77857 * 6 5 3 27 27 C 1.53708 * 108.16777 * 309.16235 * 26 6 5 28 28 O 1.42963 * 109.55620 * 70.22626 * 3 2 1 29 29 H 1.09000 * 109.47483 * 60.00043 * 1 2 3 30 30 H 1.09006 * 109.47539 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46865 * 300.00195 * 1 2 3 32 32 H 1.08997 * 109.68392 * 67.99659 * 5 3 2 33 33 H 1.09004 * 109.71215 * 307.45997 * 5 3 2 34 34 H 0.96996 * 119.99720 * 4.46823 * 9 7 6 35 35 H 1.07998 * 119.98896 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.91576 * 179.97438 * 12 11 10 37 37 H 1.08001 * 120.00705 * 179.74698 * 15 13 12 38 38 H 0.97001 * 120.00404 * 179.97438 * 21 20 18 39 39 H 1.09003 * 109.68258 * 68.94299 * 26 6 5 40 40 H 1.09006 * 109.68378 * 189.49169 * 26 6 5 41 41 H 1.09002 * 109.65453 * 292.57712 * 27 26 6 42 42 H 1.08993 * 109.44798 * 172.37403 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.5537 1.9071 -0.7859 5 6 3.5184 1.1943 -0.2510 6 7 4.1196 2.5240 -0.0619 7 6 4.9347 3.0559 -0.9942 8 8 5.4970 4.1123 -0.7788 9 7 5.1266 2.4168 -2.1652 10 6 6.0452 2.9204 -3.0959 11 6 6.2194 4.2899 -3.2295 12 6 7.1252 4.7854 -4.1481 13 6 7.8623 3.9174 -4.9371 14 9 8.7468 4.4072 -5.8331 15 6 7.6947 2.5500 -4.8096 16 6 6.7863 2.0458 -3.8901 17 8 6.6203 0.7042 -3.7627 18 6 7.2836 -0.0802 -4.6357 19 1 7.9749 0.3595 -5.3394 20 6 7.0783 -1.4512 -4.6302 21 7 6.2358 -1.9868 -3.7733 22 14 7.9979 -2.5382 -5.8395 23 1 9.4598 -2.3935 -5.6225 24 1 7.6038 -3.9546 -5.6306 25 1 7.6606 -2.1304 -7.2271 26 6 3.8092 3.2534 1.1779 27 6 2.2826 3.2665 1.3569 28 8 1.7886 1.9279 1.2677 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.6967 0.8524 -1.2705 33 1 3.9577 0.4892 0.4547 34 1 4.6289 1.6082 -2.3636 35 1 5.6463 4.9693 -2.6160 36 1 7.2591 5.8521 -4.2510 37 1 8.2675 1.8755 -5.4287 38 1 6.0918 -2.9461 -3.7696 39 1 4.2767 2.7523 2.0255 40 1 4.1802 4.2758 1.1051 41 1 1.8271 3.8753 0.5759 42 1 2.0354 3.6815 2.3339 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878935384.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:07 Heat of formation + Delta-G solvation = -158.262889 kcal Electronic energy + Delta-G solvation = -30119.706248 eV Core-core repulsion = 25594.754702 eV Total energy + Delta-G solvation = -4524.951547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.82979 -42.10250 -40.90035 -39.98045 -38.25950 -37.80457 -36.06625 -35.57291 -34.31035 -31.98852 -31.11964 -30.20189 -28.73430 -27.39514 -27.18930 -25.08884 -24.21617 -23.54870 -22.78750 -20.98071 -20.14666 -19.99407 -19.19124 -18.47354 -17.99806 -17.91974 -17.36443 -17.07961 -16.97693 -16.59108 -16.43239 -16.18499 -15.95734 -15.79176 -15.43080 -15.26819 -15.17400 -14.94309 -14.91040 -14.58432 -14.41890 -14.02833 -13.84947 -13.44387 -13.19254 -13.02048 -12.80269 -12.57375 -12.36887 -12.30757 -12.17431 -12.06965 -11.66417 -11.48548 -11.33190 -11.05826 -10.98998 -10.81802 -9.84207 -9.54706 -8.77826 -8.50228 -6.17090 0.19139 0.46239 1.27596 1.37475 1.45719 1.51310 1.85770 2.11540 2.15284 2.58138 2.66514 3.01691 3.05826 3.17090 3.44997 3.56077 3.63703 3.88417 3.95628 4.05092 4.13629 4.16499 4.31949 4.37180 4.44014 4.53249 4.56689 4.58643 4.66566 4.82925 4.83757 4.93665 4.97899 5.17349 5.22295 5.28696 5.36547 5.52612 5.66684 5.81333 5.93189 6.04084 6.08002 6.63437 6.93759 7.27444 7.62124 8.69633 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009104 B = 0.004068 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.859292 B = 6881.273371 C = 9527.702237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.386 6.386 3 C 0.252 3.748 4 H 0.071 0.929 5 C 0.093 3.907 6 N -0.623 5.623 7 C 0.710 3.290 8 O -0.599 6.599 9 N -0.667 5.667 10 C 0.073 3.927 11 C -0.048 4.048 12 C -0.203 4.203 13 C 0.124 3.876 14 F -0.144 7.144 15 C -0.264 4.264 16 C 0.131 3.869 17 O -0.203 6.203 18 C -0.418 4.418 19 H 0.100 0.900 20 C -0.007 4.007 21 N -0.903 5.903 22 Si 1.010 2.990 23 H -0.262 1.262 24 H -0.271 1.271 25 H -0.259 1.259 26 C 0.088 3.912 27 C 0.063 3.937 28 O -0.412 6.412 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.155 0.845 36 H 0.160 0.840 37 H 0.137 0.863 38 H 0.275 0.725 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 8.141 7.075 15.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.305 6.305 3 C 0.155 3.845 4 H 0.088 0.912 5 C -0.031 4.031 6 N -0.362 5.362 7 C 0.413 3.587 8 O -0.479 6.479 9 N -0.315 5.315 10 C -0.023 4.023 11 C -0.068 4.068 12 C -0.223 4.223 13 C 0.104 3.896 14 F -0.123 7.123 15 C -0.285 4.285 16 C 0.077 3.923 17 O -0.108 6.108 18 C -0.493 4.493 19 H 0.117 0.883 20 C -0.207 4.207 21 N -0.540 5.540 22 Si 0.830 3.170 23 H -0.187 1.187 24 H -0.195 1.195 25 H -0.183 1.183 26 C -0.034 4.034 27 C -0.013 4.013 28 O -0.333 6.333 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.154 0.846 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.436 8.260 7.615 15.334 hybrid contribution 0.504 -0.966 -1.033 1.501 sum -9.932 7.295 6.583 13.971 Atomic orbital electron populations 1.23006 0.78148 1.04418 1.01351 1.87992 1.22952 1.25484 1.94082 1.23094 0.91677 0.83497 0.86210 0.91171 1.21970 0.92890 0.84524 1.03750 1.47246 1.49882 1.19044 1.20062 1.15770 0.79798 0.83381 0.79741 1.90837 1.53360 1.23755 1.79926 1.42427 1.42815 1.30704 1.15597 1.16936 0.97100 0.91729 0.96488 1.20875 0.97713 0.92043 0.96210 1.20883 1.01006 1.00607 0.99764 1.17461 0.90667 0.91208 0.90234 1.91430 1.66634 1.88261 1.65945 1.20919 1.06438 0.94789 1.06320 1.19172 0.93106 0.84916 0.95088 1.83913 1.63667 1.11296 1.51908 1.21706 1.23770 0.88732 1.15126 0.88310 1.26370 0.97681 0.97150 0.99545 1.70114 1.34715 1.13120 1.36031 0.84754 0.78172 0.76593 0.77461 1.18680 1.19507 1.18322 1.22580 0.97302 0.99140 0.84358 1.23261 0.91097 0.81584 1.05387 1.87815 1.80603 1.29690 1.35179 0.92694 0.87791 0.92492 0.89263 0.89778 0.75138 0.82711 0.82280 0.84561 0.91601 0.89832 0.87334 0.91563 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.89 113.37 1.23 1.70 16 2 O -0.39 -9.97 10.62 -126.23 -1.34 -11.31 16 3 C 0.25 6.05 3.29 72.08 0.24 6.28 16 4 H 0.07 1.53 8.09 -2.38 -0.02 1.51 16 5 C 0.09 2.57 6.30 86.35 0.54 3.11 16 6 N -0.62 -17.53 3.01 -834.52 -2.52 -20.05 16 7 C 0.71 24.89 8.16 179.05 1.46 26.35 16 8 O -0.60 -22.92 13.25 -3.99 -0.05 -22.98 16 9 N -0.67 -25.43 5.10 -316.69 -1.61 -27.04 16 10 C 0.07 3.04 6.33 38.22 0.24 3.28 16 11 C -0.05 -1.76 8.70 22.37 0.19 -1.56 16 12 C -0.20 -6.92 10.02 22.33 0.22 -6.69 16 13 C 0.12 4.74 7.29 22.37 0.16 4.91 16 14 F -0.14 -5.18 17.26 44.97 0.78 -4.41 16 15 C -0.26 -11.54 9.14 22.42 0.20 -11.33 16 16 C 0.13 6.17 6.66 22.68 0.15 6.33 16 17 O -0.20 -11.02 9.31 -22.86 -0.21 -11.23 16 18 C -0.42 -22.68 9.49 67.91 0.64 -22.03 16 19 H 0.10 5.02 5.20 -2.91 -0.02 5.01 16 20 C -0.01 -0.40 5.49 84.82 0.47 0.07 16 21 N -0.90 -50.86 13.67 21.61 0.30 -50.57 16 22 Si 1.01 40.72 29.55 68.60 2.03 42.75 16 23 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 C 0.09 1.85 6.65 86.49 0.57 2.42 16 27 C 0.06 1.01 7.00 72.22 0.51 1.52 16 28 O -0.41 -9.02 10.24 -126.23 -1.29 -10.31 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 1.53 8.14 -2.38 -0.02 1.52 16 31 H 0.06 0.94 7.90 -2.39 -0.02 0.92 16 32 H 0.09 2.71 5.65 -2.39 -0.01 2.69 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.41 15.60 6.09 -92.71 -0.56 15.03 16 35 H 0.16 5.36 6.18 -2.91 -0.02 5.34 16 36 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.14 6.04 5.64 -2.91 -0.02 6.02 16 38 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.11 2.29 7.12 -2.38 -0.02 2.27 16 41 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 42 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.28 355.83 3.44 -63.84 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.53 Total: 36.95 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.85 Total: 14.36 kcal Atomic # 7 Polarization: -93.82 SS G_CDS: -3.83 Total: -97.66 kcal Atomic # 8 Polarization: -52.93 SS G_CDS: -2.90 Total: -55.83 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 0.78 Total: -4.41 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -67.28 3.44 -63.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878935384.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.424 kcal (2) G-P(sol) polarization free energy of solvation -67.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds