Wall clock time and date at job start Tue Mar 31 2020 23:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00056 * 2 1 4 4 H 1.48503 * 109.47251 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47457 * 300.00084 * 3 2 1 6 6 H 1.48497 * 109.47183 * 60.00607 * 3 2 1 7 7 C 1.37876 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00019 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97550 * 124.99988 * 10 9 7 12 12 C 1.35235 * 107.85670 * 179.97438 * 11 10 9 13 13 C 1.40410 * 107.87365 * 359.97438 * 12 11 10 14 14 N 1.40155 * 125.97794 * 180.02562 * 13 12 11 15 15 C 1.34781 * 119.99908 * 0.02562 * 14 13 12 16 16 O 1.21291 * 119.99844 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00257 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47233 * 179.97438 * 17 15 14 19 19 H 1.09010 * 110.07699 * 53.44681 * 18 17 15 20 20 N 1.46731 * 110.15298 * 291.85881 * 18 17 15 21 21 C 1.34425 * 108.74994 * 240.77292 * 20 18 17 22 22 O 1.21546 * 124.85470 * 179.97438 * 21 20 18 23 23 C 1.47548 * 110.28535 * 359.97438 * 21 20 18 24 24 C 1.39629 * 132.33822 * 180.31622 * 23 21 20 25 25 C 1.37938 * 119.82186 * 180.19896 * 24 23 21 26 26 C 1.38385 * 120.32258 * 359.44903 * 25 24 23 27 27 C 1.38476 * 120.18880 * 0.27860 * 26 25 24 28 28 C 1.37585 * 119.95350 * 0.02562 * 27 26 25 29 29 N 1.31219 * 108.04905 * 0.26567 * 13 12 11 30 30 H 0.97003 * 120.00038 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.47262 * 60.00214 * 9 7 2 32 32 H 1.09000 * 109.46751 * 299.99540 * 9 7 2 33 33 H 1.07995 * 126.06829 * 359.97438 * 11 10 9 34 34 H 1.07999 * 126.06165 * 180.02562 * 12 11 10 35 35 H 0.96992 * 120.00285 * 179.97438 * 14 13 12 36 36 H 1.09000 * 109.46900 * 60.00067 * 17 15 14 37 37 H 1.08995 * 109.46859 * 300.00434 * 17 15 14 38 38 H 0.96997 * 125.62253 * 60.75221 * 20 18 17 39 39 H 1.07991 * 120.09020 * 359.91842 * 24 23 21 40 40 H 1.08002 * 119.84176 * 179.73298 * 25 24 23 41 41 H 1.08000 * 119.91308 * 180.30220 * 26 25 24 42 42 H 1.08002 * 120.02527 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.2420 -4.6225 0.8942 12 6 3.2602 -5.4430 0.5494 13 6 3.8678 -4.9156 -0.6013 14 7 4.9628 -5.4670 -1.2805 15 6 5.5268 -6.6075 -0.8359 16 8 5.0870 -7.1564 0.1522 17 6 6.7038 -7.2008 -1.5665 18 6 7.1490 -8.4828 -0.8602 19 1 6.3026 -9.1601 -0.7454 20 7 7.7213 -8.1640 0.4527 21 6 8.9995 -8.5795 0.4794 22 8 9.7490 -8.4603 1.4287 23 6 9.3623 -9.2009 -0.8088 24 6 10.5443 -9.7814 -1.2730 25 6 10.6014 -10.2913 -2.5534 26 6 9.4896 -10.2406 -3.3758 27 6 8.3121 -9.6715 -2.9205 28 6 8.2464 -9.1544 -1.6473 29 7 3.2345 -3.8133 -0.9267 30 1 -0.4850 0.8401 0.0004 31 1 0.6240 -2.5567 -0.8903 32 1 0.6247 -2.5570 0.8897 33 1 1.5780 -4.7521 1.7360 34 1 3.5534 -6.3444 1.0668 35 1 5.3143 -5.0282 -2.0709 36 1 7.5261 -6.4853 -1.5723 37 1 6.4160 -7.4317 -2.5921 38 1 7.2544 -7.7256 1.1812 39 1 11.4129 -9.8269 -0.6329 40 1 11.5168 -10.7365 -2.9142 41 1 9.5402 -10.6463 -4.3754 42 1 7.4461 -9.6330 -3.5648 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896440802.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:45 Heat of formation + Delta-G solvation = 52.384264 kcal Electronic energy + Delta-G solvation = -27496.854791 eV Core-core repulsion = 23444.099567 eV Total energy + Delta-G solvation = -4052.755225 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.70465 -40.72038 -39.37468 -38.34081 -36.47587 -34.86860 -33.43523 -32.12464 -31.24270 -31.02498 -30.34708 -29.39600 -26.82816 -25.28601 -24.26015 -23.11384 -22.02707 -21.44329 -20.72662 -20.17873 -19.65427 -17.66170 -17.29389 -17.06810 -16.75728 -16.62386 -16.26373 -15.99024 -15.54163 -15.16291 -14.93175 -14.60906 -14.40982 -14.21803 -14.07803 -13.83854 -13.45911 -13.18553 -12.95421 -12.82882 -12.50029 -12.39051 -12.27733 -12.14153 -11.81584 -11.49889 -11.10016 -10.91907 -10.53155 -10.30852 -10.23956 -10.12464 -9.76452 -9.69405 -9.54223 -9.43565 -9.23792 -8.68179 -8.22610 -7.56614 -6.28869 -4.34037 0.34490 0.79897 2.14277 2.45256 2.63945 2.83722 2.90776 3.19404 3.27143 3.33385 3.40555 3.58983 3.61532 3.79285 3.99835 4.23301 4.28490 4.42546 4.52783 4.60328 4.74406 4.86282 4.92425 5.06497 5.07409 5.17107 5.35231 5.45501 5.47696 5.71481 5.75279 5.81853 5.91285 6.15623 6.31561 6.39399 6.47467 6.51061 6.75406 6.79946 6.99342 7.29517 7.45188 7.65963 7.82773 7.95716 7.96899 8.06788 8.55028 8.75292 9.31947 10.79936 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021104 B = 0.001957 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.463774 B =14304.109769 C =14379.255221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.253 3.747 14 N -0.627 5.627 15 C 0.520 3.480 16 O -0.519 6.519 17 C -0.144 4.144 18 C 0.189 3.811 19 H 0.116 0.884 20 N -0.707 5.707 21 C 0.558 3.442 22 O -0.528 6.528 23 C -0.153 4.153 24 C -0.048 4.048 25 C -0.126 4.126 26 C -0.089 4.089 27 C -0.099 4.099 28 C -0.080 4.080 29 N -0.302 5.302 30 H 0.267 0.733 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.412 0.588 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.432 0.568 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.393 -21.405 -8.276 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.318 4.318 13 C 0.000 4.000 14 N -0.274 5.274 15 C 0.306 3.694 16 O -0.394 6.394 17 C -0.185 4.185 18 C 0.082 3.918 19 H 0.133 0.867 20 N -0.365 5.365 21 C 0.345 3.655 22 O -0.405 6.405 23 C -0.157 4.157 24 C -0.067 4.067 25 C -0.144 4.144 26 C -0.107 4.107 27 C -0.118 4.118 28 C -0.081 4.081 29 N -0.134 5.134 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.177 0.823 35 H 0.247 0.753 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.276 0.724 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.181 -20.565 -7.918 27.340 hybrid contribution 0.228 0.842 0.377 0.951 sum 16.409 -19.723 -7.540 26.742 Atomic orbital electron populations 1.69924 1.06042 1.27580 1.49732 1.24951 0.95001 0.99599 0.94568 0.86269 0.80041 0.82418 0.77760 1.19574 1.20663 1.20725 1.21281 0.94009 0.89338 1.52079 0.91263 1.19776 0.85601 0.81299 0.99335 1.49112 1.22948 1.19679 1.18156 1.22585 1.00308 0.90236 0.96721 1.21501 1.02201 1.06455 1.01642 1.19107 0.91618 0.94406 0.94859 1.42440 1.29869 1.24823 1.30292 1.20446 0.83984 0.79938 0.85027 1.90655 1.62790 1.60273 1.25693 1.22018 0.97351 0.97894 1.01212 1.19741 0.94962 0.95003 0.82055 0.86697 1.45966 1.12600 1.61535 1.16351 1.18313 0.82104 0.78089 0.86989 1.90819 1.54049 1.57291 1.38362 1.20484 0.95630 1.03538 0.96006 1.20905 0.96351 0.93979 0.95417 1.21176 0.99215 1.00374 0.93605 1.21358 0.92355 0.97077 0.99906 1.20363 0.98878 0.98649 0.93868 1.20385 0.94821 0.98195 0.94684 1.77336 1.03536 1.16034 1.16445 0.92337 0.93649 0.92483 0.81452 0.82255 0.75262 0.87446 0.86587 0.72401 0.84953 0.84940 0.84842 0.84828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.00 13.29 55.43 0.74 -24.27 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.49 9.23 -34.44 -0.32 -14.81 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.26 6.40 6.26 -5.19 -0.03 6.37 16 10 N -0.32 -7.14 3.67 -62.56 -0.23 -7.37 16 11 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 12 C -0.29 -5.32 9.60 -39.83 -0.38 -5.71 16 13 C 0.25 4.72 8.11 -154.39 -1.25 3.47 16 14 N -0.63 -8.38 5.45 -11.13 -0.06 -8.44 16 15 C 0.52 5.94 7.69 -10.98 -0.08 5.85 16 16 O -0.52 -7.33 12.08 5.55 0.07 -7.26 16 17 C -0.14 -0.99 5.41 -27.89 -0.15 -1.14 16 18 C 0.19 1.49 3.05 -68.90 -0.21 1.28 16 19 H 0.12 0.88 7.92 -51.92 -0.41 0.47 16 20 N -0.71 -7.39 5.73 -55.86 -0.32 -7.71 16 21 C 0.56 6.85 8.34 -12.62 -0.11 6.74 16 22 O -0.53 -8.46 18.04 5.33 0.10 -8.37 16 23 C -0.15 -1.46 6.26 -105.05 -0.66 -2.11 16 24 C -0.05 -0.37 10.10 -39.17 -0.40 -0.76 16 25 C -0.13 -0.67 10.02 -39.64 -0.40 -1.07 16 26 C -0.09 -0.40 10.05 -39.44 -0.40 -0.80 16 27 C -0.10 -0.51 10.03 -39.73 -0.40 -0.91 16 28 C -0.08 -0.58 5.67 -104.27 -0.59 -1.17 16 29 N -0.30 -6.67 12.42 31.44 0.39 -6.28 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.39 8.07 -51.93 -0.42 0.98 16 33 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 34 H 0.16 2.81 5.92 -52.49 -0.31 2.50 16 35 H 0.41 4.35 8.82 -40.82 -0.36 3.99 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.43 4.81 8.15 -40.82 -0.33 4.48 16 39 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.13 0.28 8.06 -52.49 -0.42 -0.15 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -35.01 367.98 -9.22 -44.24 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -4.76 Total: 6.18 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -5.67 Total: -2.39 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.52 Total: -54.07 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: 0.16 Total: -15.63 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.01 -9.22 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896440802.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.622 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds