Wall clock time and date at job start Tue Mar 31 2020 23:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 117.00119 * 2 1 4 4 C 1.38184 * 120.00749 * 0.25590 * 3 2 1 5 5 C 1.39766 * 119.85264 * 180.22950 * 4 3 2 6 6 C 1.47341 * 120.06280 * 179.76478 * 5 4 3 7 7 N 1.29867 * 119.99867 * 179.73057 * 6 5 4 8 8 N 1.40102 * 119.99854 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99813 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99763 * 0.02562 * 9 8 7 11 11 C 1.47785 * 119.99906 * 180.02562 * 9 8 7 12 12 C 1.39603 * 120.15000 * 179.97438 * 11 9 8 13 13 C 1.37942 * 119.85417 * 179.97438 * 12 11 9 14 14 C 1.38365 * 120.14747 * 359.97438 * 13 12 11 15 15 C 1.38365 * 120.29936 * 0.04313 * 14 13 12 16 16 C 1.37948 * 120.14724 * 359.96223 * 15 14 13 17 17 C 1.39833 * 119.87447 * 359.49298 * 5 4 3 18 18 C 1.37766 * 120.00883 * 0.27471 * 17 5 4 19 19 C 1.38965 * 120.14531 * 359.97438 * 18 17 5 20 20 O 1.35701 * 119.93040 * 180.02562 * 19 18 17 21 21 C 1.34775 * 117.00315 * 354.38321 * 20 19 18 22 22 H 1.08008 * 120.00217 * 5.06038 * 21 20 19 23 23 C 1.38625 * 120.00318 * 185.06672 * 21 20 19 24 24 N 1.31574 * 119.99673 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00319 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47409 * 59.99357 * 25 23 21 27 27 H 1.48502 * 109.47570 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47239 * 299.99500 * 25 23 21 29 29 H 1.09000 * 109.46819 * 300.00421 * 1 2 3 30 30 H 1.08993 * 109.46514 * 59.99983 * 1 2 3 31 31 H 1.08994 * 109.46834 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.07184 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00607 * 359.72275 * 6 5 4 34 34 H 0.96996 * 120.00178 * 0.02562 * 8 7 6 35 35 H 1.08004 * 120.06864 * 359.70519 * 12 11 9 36 36 H 1.07998 * 119.93077 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.85005 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.92731 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.07913 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.99848 * 180.29510 * 17 5 4 41 41 H 1.08000 * 119.92903 * 180.02562 * 18 17 5 42 42 H 0.97005 * 119.99901 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3703 0.0053 5 6 1.9317 3.6139 0.0005 6 6 1.1339 4.8527 0.0009 7 7 1.7279 6.0075 0.0017 8 7 0.9694 7.1854 0.0015 9 6 1.5858 8.3840 0.0028 10 8 2.8003 8.4429 0.0037 11 6 0.7857 9.6265 0.0033 12 6 1.4210 10.8696 0.0052 13 6 0.6681 12.0254 0.0050 14 6 -0.7137 11.9547 0.0025 15 6 -1.3498 10.7260 0.0009 16 6 -0.6090 9.5623 0.0012 17 6 3.3285 3.6803 0.0009 18 6 4.0733 2.5213 0.0005 19 6 3.4397 1.2845 0.0001 20 8 4.1776 0.1457 0.0002 21 6 5.5134 0.2821 -0.1169 22 1 5.9572 1.2667 -0.1230 23 6 6.3176 -0.8414 -0.2296 24 7 5.7770 -2.0409 -0.2218 25 14 8.1689 -0.6524 -0.3912 26 1 8.7009 0.0512 0.8035 27 1 8.7964 -1.9943 -0.4949 28 1 8.4816 0.1362 -1.6101 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2152 2.3153 0.0091 33 1 0.0552 4.8004 0.0005 34 1 0.0005 7.1384 0.0012 35 1 2.4995 10.9261 0.0111 36 1 1.1583 12.9878 0.0061 37 1 -1.2985 12.8628 0.0019 38 1 -2.4287 10.6778 -0.0006 39 1 -1.1066 8.6038 0.0004 40 1 3.8234 4.6401 0.0020 41 1 5.1520 2.5741 0.0013 42 1 6.3397 -2.8270 -0.3011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916249629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:27 Heat of formation + Delta-G solvation = 6.127785 kcal Electronic energy + Delta-G solvation = -26829.563358 eV Core-core repulsion = 22742.509551 eV Total energy + Delta-G solvation = -4087.053807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33083 -39.66540 -38.49971 -37.62868 -36.95307 -35.58297 -32.86099 -32.32963 -31.37421 -31.05044 -29.65079 -28.79050 -26.66892 -25.55498 -24.41411 -23.16251 -22.62761 -21.68807 -20.71365 -20.35352 -18.53944 -18.15599 -17.43332 -17.12817 -16.52214 -15.88927 -15.55242 -15.22740 -15.21211 -15.15854 -14.91266 -14.62553 -14.12685 -14.00749 -13.89214 -13.86831 -13.55386 -13.41223 -13.15158 -12.48089 -12.39499 -12.08633 -11.76000 -11.58263 -11.52650 -11.47327 -11.13640 -10.97977 -10.79625 -10.53487 -10.50002 -10.21038 -9.98581 -9.50331 -9.46077 -9.40530 -9.13727 -8.72363 -7.94689 -6.91349 -6.55362 -4.07669 0.42680 0.91967 1.33462 2.17429 2.44950 2.56344 2.98773 3.11343 3.14780 3.16068 3.56703 3.89517 3.95148 4.24975 4.34837 4.48118 4.50389 4.67638 4.81000 4.91579 4.96304 5.02043 5.06500 5.10024 5.33439 5.43209 5.51528 5.52909 5.57912 5.80563 5.81513 5.86215 5.91270 5.98014 6.00240 6.16278 6.28282 6.42507 6.50282 6.83604 7.00009 7.04132 7.16789 7.26888 7.51874 7.60016 7.85234 8.09597 8.41745 8.88199 9.56006 10.60433 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002001 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.841837 B =13988.884831 C =15683.539869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.302 6.302 3 C 0.051 3.949 4 C -0.134 4.134 5 C -0.144 4.144 6 C 0.150 3.850 7 N -0.263 5.263 8 N -0.582 5.582 9 C 0.572 3.428 10 O -0.503 6.503 11 C -0.127 4.127 12 C -0.058 4.058 13 C -0.126 4.126 14 C -0.096 4.096 15 C -0.127 4.127 16 C -0.089 4.089 17 C -0.039 4.039 18 C -0.226 4.226 19 C 0.151 3.849 20 O -0.149 6.149 21 C -0.390 4.390 22 H 0.097 0.903 23 C 0.041 3.959 24 N -0.848 5.848 25 Si 0.944 3.056 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.267 1.267 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.377 0.623 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.184 20.453 0.269 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.216 6.216 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.057 4.057 7 N -0.068 5.068 8 N -0.324 5.324 9 C 0.360 3.640 10 O -0.376 6.376 11 C -0.132 4.132 12 C -0.077 4.077 13 C -0.144 4.144 14 C -0.114 4.114 15 C -0.145 4.145 16 C -0.108 4.108 17 C -0.060 4.060 18 C -0.246 4.246 19 C 0.094 3.906 20 O -0.050 6.050 21 C -0.465 4.465 22 H 0.115 0.885 23 C -0.165 4.165 24 N -0.480 5.480 25 Si 0.768 3.232 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.192 1.192 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.141 0.859 33 H 0.123 0.877 34 H 0.215 0.785 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.392 20.389 0.275 24.958 hybrid contribution -0.910 -0.044 -0.075 0.914 sum -15.302 20.345 0.200 25.458 Atomic orbital electron populations 1.22899 0.80356 1.03022 1.00254 1.86250 1.19420 1.26158 1.89792 1.17945 0.89317 0.84427 1.07703 1.20644 0.98362 0.90593 1.05919 1.17439 0.92494 0.88827 1.16122 1.24389 0.96931 0.90816 0.93566 1.75170 1.22087 0.92033 1.17551 1.46809 1.07725 1.03999 1.73840 1.17981 0.87655 0.81652 0.76738 1.90804 1.13431 1.86580 1.46802 1.19901 0.93533 0.93341 1.06405 1.21334 1.01198 0.90628 0.94497 1.21199 0.94023 0.98474 1.00745 1.21413 0.94825 0.98011 0.97149 1.21116 1.00251 0.92183 1.00949 1.21340 0.92673 0.98993 0.97760 1.20972 0.92349 0.97888 0.94789 1.20886 1.00868 0.90635 1.12167 1.18874 0.88284 0.87694 0.95788 1.84009 1.19690 1.25779 1.75500 1.21461 0.78397 0.95094 1.51587 0.88536 1.25383 1.00834 0.94166 0.96134 1.70065 1.36646 0.97761 1.43530 0.85725 0.79881 0.78103 0.79486 1.19239 1.20161 1.19228 0.93545 0.93518 0.89050 0.85945 0.87657 0.78451 0.84324 0.85081 0.85453 0.85272 0.85766 0.85803 0.84447 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.30 -6.27 10.28 -34.19 -0.35 -6.62 16 3 C 0.05 1.08 6.70 -39.12 -0.26 0.82 16 4 C -0.13 -2.28 8.77 -39.03 -0.34 -2.62 16 5 C -0.14 -2.50 5.87 -105.03 -0.62 -3.12 16 6 C 0.15 2.16 10.74 -14.68 -0.16 2.00 16 7 N -0.26 -4.24 10.15 32.14 0.33 -3.92 16 8 N -0.58 -7.60 6.21 30.52 0.19 -7.41 16 9 C 0.57 8.17 7.89 -12.36 -0.10 8.07 16 10 O -0.50 -9.33 16.69 5.28 0.09 -9.24 16 11 C -0.13 -1.34 5.87 -104.97 -0.62 -1.96 16 12 C -0.06 -0.55 9.60 -39.18 -0.38 -0.93 16 13 C -0.13 -0.88 10.03 -39.64 -0.40 -1.28 16 14 C -0.10 -0.57 10.04 -39.49 -0.40 -0.96 16 15 C -0.13 -0.77 10.03 -39.64 -0.40 -1.17 16 16 C -0.09 -0.67 9.54 -39.17 -0.37 -1.05 16 17 C -0.04 -0.76 9.57 -39.16 -0.37 -1.14 16 18 C -0.23 -4.90 9.14 -39.48 -0.36 -5.26 16 19 C 0.15 3.63 6.67 -38.83 -0.26 3.37 16 20 O -0.15 -4.23 9.53 -14.25 -0.14 -4.37 16 21 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 22 H 0.10 2.42 5.19 -52.48 -0.27 2.15 16 23 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 24 N -0.85 -24.37 13.67 55.48 0.76 -23.61 16 25 Si 0.94 20.12 29.55 -169.99 -5.02 15.10 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 28 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 29 H 0.05 0.55 7.65 -51.93 -0.40 0.15 16 30 H 0.05 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.12 1.61 6.28 -52.48 -0.33 1.29 16 33 H 0.11 1.08 8.02 -52.49 -0.42 0.66 16 34 H 0.38 3.37 6.69 -182.60 -1.22 2.15 16 35 H 0.14 1.38 7.65 -52.48 -0.40 0.97 16 36 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 37 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.12 0.66 6.41 -52.49 -0.34 0.32 16 40 H 0.12 2.35 7.54 -52.49 -0.40 1.95 16 41 H 0.14 2.95 5.62 -52.49 -0.29 2.65 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -35.35 371.98 -7.68 -43.02 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.29 Total: 4.61 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -3.84 Total: -13.18 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 1.27 Total: -34.94 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.40 Total: -20.23 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.35 -7.68 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916249629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.152 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds