Wall clock time and date at job start Tue Mar 31 2020 23:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35951 * 117.00119 * 2 1 4 4 C 1.38184 * 120.00749 * 0.25590 * 3 2 1 5 5 C 1.39766 * 119.85264 * 180.22950 * 4 3 2 6 6 C 1.47341 * 120.06280 * 179.76478 * 5 4 3 7 7 N 1.29867 * 119.99867 * 179.73057 * 6 5 4 8 8 N 1.40102 * 119.99854 * 179.97438 * 7 6 5 9 9 C 1.34778 * 119.99813 * 179.97438 * 8 7 6 10 10 O 1.21594 * 119.99763 * 0.02562 * 9 8 7 11 11 C 1.47785 * 119.99906 * 180.02562 * 9 8 7 12 12 C 1.39603 * 120.15000 * 179.97438 * 11 9 8 13 13 C 1.37942 * 119.85417 * 179.97438 * 12 11 9 14 14 C 1.38365 * 120.14747 * 359.97438 * 13 12 11 15 15 C 1.38365 * 120.29936 * 0.04313 * 14 13 12 16 16 C 1.37948 * 120.14724 * 359.96223 * 15 14 13 17 17 C 1.39833 * 119.87447 * 359.49298 * 5 4 3 18 18 C 1.37766 * 120.00883 * 0.27471 * 17 5 4 19 19 C 1.38965 * 120.14531 * 359.97438 * 18 17 5 20 20 O 1.35701 * 119.93040 * 180.02562 * 19 18 17 21 21 C 1.34775 * 117.00315 * 354.38321 * 20 19 18 22 22 H 1.08008 * 120.00217 * 5.06038 * 21 20 19 23 23 C 1.38625 * 120.00318 * 185.06672 * 21 20 19 24 24 N 1.31574 * 119.99673 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00319 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47409 * 59.99357 * 25 23 21 27 27 H 1.48502 * 109.47570 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47239 * 299.99500 * 25 23 21 29 29 H 1.09000 * 109.46819 * 300.00421 * 1 2 3 30 30 H 1.08993 * 109.46514 * 59.99983 * 1 2 3 31 31 H 1.08994 * 109.46834 * 180.02562 * 1 2 3 32 32 H 1.08004 * 120.07184 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00607 * 359.72275 * 6 5 4 34 34 H 0.96996 * 120.00178 * 0.02562 * 8 7 6 35 35 H 1.08004 * 120.06864 * 359.70519 * 12 11 9 36 36 H 1.07998 * 119.93077 * 180.02562 * 13 12 11 37 37 H 1.08002 * 119.85005 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.92731 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.07913 * 179.97438 * 16 15 14 40 40 H 1.07996 * 119.99848 * 180.29510 * 17 5 4 41 41 H 1.08000 * 119.92903 * 180.02562 * 18 17 5 42 42 H 0.97005 * 119.99901 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2938 2.3703 0.0053 5 6 1.9317 3.6139 0.0005 6 6 1.1339 4.8527 0.0009 7 7 1.7279 6.0075 0.0017 8 7 0.9694 7.1854 0.0015 9 6 1.5858 8.3840 0.0028 10 8 2.8003 8.4429 0.0037 11 6 0.7857 9.6265 0.0033 12 6 1.4210 10.8696 0.0052 13 6 0.6681 12.0254 0.0050 14 6 -0.7137 11.9547 0.0025 15 6 -1.3498 10.7260 0.0009 16 6 -0.6090 9.5623 0.0012 17 6 3.3285 3.6803 0.0009 18 6 4.0733 2.5213 0.0005 19 6 3.4397 1.2845 0.0001 20 8 4.1776 0.1457 0.0002 21 6 5.5134 0.2821 -0.1169 22 1 5.9572 1.2667 -0.1230 23 6 6.3176 -0.8414 -0.2296 24 7 5.7770 -2.0409 -0.2218 25 14 8.1689 -0.6524 -0.3912 26 1 8.7009 0.0512 0.8035 27 1 8.7964 -1.9943 -0.4949 28 1 8.4816 0.1362 -1.6101 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 0.2152 2.3153 0.0091 33 1 0.0552 4.8004 0.0005 34 1 0.0005 7.1384 0.0012 35 1 2.4995 10.9261 0.0111 36 1 1.1583 12.9878 0.0061 37 1 -1.2985 12.8628 0.0019 38 1 -2.4287 10.6778 -0.0006 39 1 -1.1066 8.6038 0.0004 40 1 3.8234 4.6401 0.0020 41 1 5.1520 2.5741 0.0013 42 1 6.3397 -2.8270 -0.3011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916249629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:26 Heat of formation + Delta-G solvation = -18.011411 kcal Electronic energy + Delta-G solvation = -26830.610112 eV Core-core repulsion = 22742.509551 eV Total energy + Delta-G solvation = -4088.100561 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32015 -41.18463 -39.33140 -39.26831 -38.34804 -36.99346 -34.42853 -33.76281 -32.03750 -31.88160 -31.20042 -30.17870 -27.90037 -27.40804 -25.43030 -24.21601 -23.42941 -23.23659 -21.72631 -21.67119 -19.93286 -19.57238 -18.97898 -18.30794 -17.49314 -17.08772 -16.80761 -16.62442 -16.32638 -16.29157 -16.23921 -15.69549 -15.53621 -15.34758 -15.25066 -14.99412 -14.87829 -14.40173 -14.06425 -13.96768 -13.53203 -13.51087 -13.03784 -12.96131 -12.74470 -12.64885 -12.54907 -12.21410 -12.07759 -12.03015 -11.87124 -11.47769 -11.28827 -11.05797 -10.87276 -10.27782 -9.99088 -9.97120 -9.44533 -8.57087 -8.47809 -6.12374 -0.33161 0.02377 0.38612 0.55822 1.32668 1.35599 1.39107 1.49318 1.51445 1.95277 2.16844 2.59760 2.82334 2.87763 3.13655 3.35564 3.41282 3.70161 3.85737 3.90567 3.98395 4.19454 4.25708 4.28115 4.38477 4.43310 4.46536 4.49906 4.53391 4.65458 4.70715 4.80352 4.82809 4.94082 5.03452 5.10986 5.27770 5.35632 5.41192 5.48353 5.48990 5.61013 5.89848 5.91174 5.96844 6.05716 6.47535 6.65819 6.95392 7.35885 7.74025 8.73552 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002001 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.841837 B =13988.884831 C =15683.539869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.044 3.956 4 C -0.112 4.112 5 C -0.113 4.113 6 C 0.156 3.844 7 N -0.295 5.295 8 N -0.568 5.568 9 C 0.569 3.431 10 O -0.560 6.560 11 C -0.153 4.153 12 C -0.079 4.079 13 C -0.129 4.129 14 C -0.087 4.087 15 C -0.125 4.125 16 C -0.085 4.085 17 C -0.059 4.059 18 C -0.223 4.223 19 C 0.106 3.894 20 O -0.209 6.209 21 C -0.416 4.416 22 H 0.103 0.897 23 C -0.019 4.019 24 N -0.911 5.911 25 Si 1.017 2.983 26 H -0.258 1.258 27 H -0.269 1.269 28 H -0.258 1.258 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.178 0.822 33 H 0.165 0.835 34 H 0.402 0.598 35 H 0.119 0.881 36 H 0.151 0.849 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 24.337 0.230 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.258 6.258 3 C -0.001 4.001 4 C -0.133 4.133 5 C -0.116 4.116 6 C -0.052 4.052 7 N -0.101 5.101 8 N -0.312 5.312 9 C 0.359 3.641 10 O -0.438 6.438 11 C -0.157 4.157 12 C -0.098 4.098 13 C -0.147 4.147 14 C -0.105 4.105 15 C -0.142 4.142 16 C -0.104 4.104 17 C -0.080 4.080 18 C -0.243 4.243 19 C 0.053 3.947 20 O -0.114 6.114 21 C -0.492 4.492 22 H 0.120 0.880 23 C -0.217 4.217 24 N -0.548 5.548 25 Si 0.836 3.164 26 H -0.182 1.182 27 H -0.194 1.194 28 H -0.183 1.183 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.195 0.805 33 H 0.182 0.818 34 H 0.244 0.756 35 H 0.137 0.863 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.180 0.820 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.204 24.339 0.240 31.004 hybrid contribution 0.037 -0.695 -0.047 0.697 sum -19.168 23.644 0.193 30.438 Atomic orbital electron populations 1.23337 0.76768 1.05070 1.02549 1.86215 1.23285 1.26448 1.89808 1.18252 0.88612 0.86098 1.07156 1.21096 1.00693 0.88535 1.02986 1.17885 0.91823 0.90834 1.11093 1.24440 0.99136 0.88718 0.92929 1.75047 1.25045 0.93636 1.16348 1.46589 1.08825 1.02633 1.73143 1.18744 0.87395 0.82849 0.75119 1.90772 1.16015 1.87401 1.49570 1.19728 0.94670 0.91506 1.09820 1.21380 1.00779 0.91707 0.95955 1.21457 0.94835 0.98269 1.00158 1.21876 0.94384 0.99501 0.94692 1.21552 1.01866 0.91467 0.99354 1.21611 0.91151 1.00979 0.96622 1.21064 0.93812 0.96872 0.96225 1.20941 1.00767 0.91080 1.11480 1.19534 0.90037 0.87591 0.97545 1.83991 1.19973 1.27625 1.79833 1.21851 0.79067 0.95711 1.52589 0.88011 1.26583 1.05911 0.93571 0.95673 1.70204 1.38439 0.98641 1.47491 0.84669 0.73420 0.78399 0.79878 1.18221 1.19356 1.18267 0.90977 0.91042 0.87578 0.80510 0.81835 0.75577 0.86268 0.83122 0.82256 0.81975 0.83353 0.85671 0.85598 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.53 16 2 O -0.34 -14.23 10.28 -79.02 -0.81 -15.04 16 3 C 0.04 1.85 6.70 22.57 0.15 2.00 16 4 C -0.11 -3.43 8.77 22.63 0.20 -3.23 16 5 C -0.11 -3.57 5.87 -20.13 -0.12 -3.68 16 6 C 0.16 3.73 10.74 87.38 0.94 4.67 16 7 N -0.30 -8.71 10.15 -52.22 -0.53 -9.24 16 8 N -0.57 -13.15 6.21 -175.61 -1.09 -14.24 16 9 C 0.57 15.72 7.89 86.77 0.68 16.41 16 10 O -0.56 -21.35 16.69 -4.01 -0.07 -21.42 16 11 C -0.15 -2.97 5.87 -20.09 -0.12 -3.09 16 12 C -0.08 -1.47 9.60 22.53 0.22 -1.25 16 13 C -0.13 -1.48 10.03 22.23 0.22 -1.26 16 14 C -0.09 -0.64 10.04 22.33 0.22 -0.41 16 15 C -0.12 -0.89 10.03 22.23 0.22 -0.67 16 16 C -0.09 -0.95 9.54 22.53 0.22 -0.74 16 17 C -0.06 -2.29 9.57 22.54 0.22 -2.07 16 18 C -0.22 -10.20 9.14 22.33 0.20 -9.99 16 19 C 0.11 5.38 6.67 22.76 0.15 5.53 16 20 O -0.21 -12.86 9.53 -7.67 -0.07 -12.93 16 21 C -0.42 -24.71 9.48 67.91 0.64 -24.06 16 22 H 0.10 5.57 5.19 -2.91 -0.02 5.55 16 23 C -0.02 -1.07 5.49 84.82 0.47 -0.61 16 24 N -0.91 -56.48 13.67 21.61 0.30 -56.19 16 25 Si 1.02 43.78 29.55 68.60 2.03 45.81 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 28 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 29 H 0.07 1.40 7.65 -2.39 -0.02 1.38 16 30 H 0.07 1.40 7.67 -2.39 -0.02 1.38 16 31 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.18 3.46 6.28 -2.91 -0.02 3.44 16 33 H 0.16 2.06 8.02 -2.91 -0.02 2.04 16 34 H 0.40 5.28 6.69 -213.32 -1.43 3.86 16 35 H 0.12 2.56 7.65 -2.91 -0.02 2.53 16 36 H 0.15 1.03 8.06 -2.91 -0.02 1.00 16 37 H 0.16 0.18 8.06 -2.91 -0.02 0.16 16 38 H 0.16 0.14 8.06 -2.91 -0.02 0.11 16 39 H 0.15 0.79 6.41 -2.91 -0.02 0.77 16 40 H 0.13 4.81 7.54 -2.91 -0.02 4.78 16 41 H 0.13 5.88 5.62 -2.91 -0.02 5.86 16 42 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 Total: -1.00 -89.28 371.98 5.04 -84.24 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.34 Total: 19.95 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: 5.63 Total: -20.93 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -1.33 Total: -79.67 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.95 Total: -49.40 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -89.28 5.04 -84.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916249629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.225 kcal (2) G-P(sol) polarization free energy of solvation -89.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds