Wall clock time and date at job start Tue Mar 31 2020 23:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48501 * 109.46935 * 240.00619 * 3 2 1 5 5 H 1.48501 * 109.46807 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47495 * 120.00266 * 3 2 1 7 7 C 1.38982 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.37330 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.36486 * 126.06595 * 180.02562 * 9 7 2 11 11 C 1.35689 * 107.50681 * 179.97438 * 10 9 7 12 12 N 1.40595 * 126.08203 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99864 * 179.97438 * 12 11 10 14 14 O 1.21306 * 119.99803 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.46095 * 54.97310 * 16 15 13 18 18 C 1.52911 * 109.45736 * 294.99950 * 16 15 13 19 19 C 1.50496 * 109.90810 * 288.55127 * 18 16 15 20 20 O 1.21287 * 119.61673 * 144.83885 * 19 18 16 21 21 N 1.34565 * 120.76662 * 324.82104 * 19 18 16 22 22 C 1.39818 * 120.45681 * 0.79399 * 21 19 18 23 23 C 1.38870 * 120.19069 * 198.49065 * 22 21 19 24 24 C 1.38109 * 119.89190 * 179.97438 * 23 22 21 25 25 C 1.38306 * 120.08754 * 0.02562 * 24 23 22 26 26 C 1.38279 * 120.15148 * 0.02562 * 25 24 23 27 27 C 1.38104 * 120.03630 * 0.02562 * 26 25 24 28 28 C 1.40647 * 107.83427 * 0.22283 * 11 10 9 29 29 N 1.30909 * 108.38477 * 359.61906 * 28 11 10 30 30 H 0.97005 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.07999 * 126.25375 * 359.92659 * 10 9 7 32 32 H 0.96999 * 120.00089 * 359.97438 * 12 11 10 33 33 H 1.09000 * 109.46978 * 300.00347 * 15 13 12 34 34 H 1.08996 * 109.47197 * 59.99985 * 15 13 12 35 35 H 1.08994 * 109.40051 * 48.68757 * 18 16 15 36 36 H 1.08997 * 109.39564 * 168.42400 * 18 16 15 37 37 H 0.97003 * 119.76977 * 180.81785 * 21 19 18 38 38 H 1.07999 * 120.05102 * 359.95551 * 23 22 21 39 39 H 1.07997 * 119.95281 * 180.02562 * 24 23 22 40 40 H 1.08001 * 119.92179 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.98807 * 180.02562 * 26 25 24 42 42 H 1.07995 * 125.80834 * 179.73894 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1006 1.6964 -1.2126 5 1 1.2819 2.7464 -0.0006 6 1 3.1008 1.6965 1.2124 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9891 -5.9383 -0.0003 13 6 -0.1100 -6.7182 0.0009 14 8 -1.2126 -6.2124 0.0018 15 6 0.0306 -8.2186 0.0000 16 6 -1.3579 -8.8611 0.0010 17 1 -1.9360 -8.4778 -0.8398 18 6 -2.0748 -8.5226 1.3086 19 6 -1.4452 -9.2773 2.4483 20 8 -1.3697 -8.7580 3.5418 21 7 -0.9653 -10.5215 2.2684 22 6 -1.0286 -11.1306 1.0115 23 6 -0.9004 -12.5085 0.8959 24 6 -0.9643 -13.1038 -0.3486 25 6 -1.1553 -12.3295 -1.4786 26 6 -1.2823 -10.9571 -1.3668 27 6 -1.2181 -10.3558 -0.1252 28 6 -0.3512 -3.8199 -0.0048 29 7 -0.0715 -2.5410 0.0001 30 1 -0.4851 0.8401 0.0004 31 1 2.9301 -3.8708 -0.0017 32 1 1.8708 -6.3427 -0.0013 33 1 0.5750 -8.5319 -0.8909 34 1 0.5774 -8.5328 0.8890 35 1 -1.9979 -7.4519 1.4970 36 1 -3.1258 -8.8001 1.2275 37 1 -0.5732 -10.9992 3.0160 38 1 -0.7505 -13.1136 1.7779 39 1 -0.8651 -14.1754 -0.4396 40 1 -1.2053 -12.7978 -2.4505 41 1 -1.4317 -10.3550 -2.2508 42 1 -1.3418 -4.2500 -0.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931193071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:23 Heat of formation + Delta-G solvation = 35.849660 kcal Electronic energy + Delta-G solvation = -28294.214840 eV Core-core repulsion = 24240.742621 eV Total energy + Delta-G solvation = -4053.472219 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43202 -39.86697 -38.83883 -38.64978 -35.60153 -34.89294 -34.10293 -33.14035 -30.65561 -30.21985 -29.64559 -29.04738 -27.34103 -24.90601 -23.88203 -22.97558 -22.74322 -21.03464 -20.32336 -19.39143 -18.95784 -18.22585 -17.56120 -17.20449 -16.51792 -16.19993 -15.82513 -15.41874 -15.13899 -14.94782 -14.84301 -14.62247 -14.11642 -13.94487 -13.65235 -13.52527 -13.39651 -13.11435 -12.93475 -12.78378 -12.48139 -11.92862 -11.66306 -11.48323 -11.41355 -11.37047 -11.25044 -11.11952 -10.93701 -10.90137 -10.54650 -10.13118 -10.06161 -9.26725 -9.13818 -9.07240 -8.77986 -8.31664 -8.03649 -6.67979 -6.53574 -4.20726 0.89301 0.98764 2.40638 2.79764 2.85008 3.05052 3.05939 3.10065 3.41206 3.62394 3.69579 3.89103 4.24535 4.37885 4.42226 4.45467 4.65373 4.70889 4.78194 4.82327 5.02290 5.04125 5.09385 5.12822 5.29165 5.40036 5.47279 5.60576 5.63848 5.76049 5.91017 6.01698 6.09079 6.21064 6.26213 6.46902 6.47946 6.59053 6.92029 6.94455 6.97592 7.14202 7.26449 7.83880 7.87695 8.18672 8.30824 8.64692 8.86124 9.40040 9.69525 10.42395 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.002201 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.308122 B =12716.695216 C =13119.531961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.143 5.143 10 C -0.085 4.085 11 C -0.061 4.061 12 N -0.623 5.623 13 C 0.498 3.502 14 O -0.534 6.534 15 C -0.132 4.132 16 C -0.025 4.025 17 H 0.108 0.892 18 C -0.141 4.141 19 C 0.520 3.480 20 O -0.521 6.521 21 N -0.669 5.669 22 C 0.167 3.833 23 C -0.156 4.156 24 C -0.090 4.090 25 C -0.144 4.144 26 C -0.078 4.078 27 C -0.117 4.117 28 C -0.032 4.032 29 N -0.261 5.261 30 H 0.275 0.725 31 H 0.145 0.855 32 H 0.396 0.604 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.408 0.592 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -24.778 -2.480 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.090 4.910 10 C -0.236 4.236 11 C -0.166 4.166 12 N -0.265 5.265 13 C 0.285 3.715 14 O -0.413 6.413 15 C -0.172 4.172 16 C -0.044 4.044 17 H 0.126 0.874 18 C -0.181 4.181 19 C 0.309 3.691 20 O -0.396 6.396 21 N -0.313 5.313 22 C 0.070 3.930 23 C -0.177 4.177 24 C -0.109 4.109 25 C -0.163 4.163 26 C -0.096 4.096 27 C -0.119 4.119 28 C -0.208 4.208 29 N -0.092 5.092 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.229 0.771 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.121 0.879 37 H 0.245 0.755 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -1.005 -22.585 -1.944 22.691 hybrid contribution 1.596 -0.796 0.333 1.814 sum 0.591 -23.381 -1.611 23.444 Atomic orbital electron populations 1.70208 1.06107 1.28063 1.35292 1.25635 0.95708 1.00245 0.95520 0.85902 0.79145 0.79683 0.79446 1.19183 1.20140 1.19174 1.19812 0.91611 0.80587 1.53574 0.86718 1.44533 1.04052 1.03274 1.39162 1.21265 0.96833 0.85443 1.20023 1.17281 0.94300 0.81298 1.23727 1.42532 1.08246 1.04630 1.71058 1.20246 0.84627 0.88380 0.78286 1.90568 1.25605 1.74952 1.50131 1.21686 0.98321 0.92756 1.04446 1.19748 0.95831 0.89597 0.99198 0.87383 1.21990 1.00779 1.04015 0.91301 1.21043 0.76979 0.80464 0.90584 1.90797 1.55131 1.66734 1.26931 1.43741 1.60194 1.16878 1.10522 1.17677 0.98898 0.91882 0.84505 1.20770 1.06171 0.92039 0.98737 1.20963 0.98182 0.99898 0.91817 1.21113 1.02593 0.93772 0.98792 1.20940 0.97574 0.94805 0.96315 1.19562 1.05194 0.95002 0.92178 1.24110 0.98027 0.90712 1.07927 1.78249 0.90105 1.15137 1.25696 0.91423 0.83796 0.77085 0.88406 0.89634 0.84975 0.87903 0.75464 0.85588 0.85634 0.85730 0.85106 0.80659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.73 11.81 55.49 0.66 -21.07 16 2 C 0.05 1.20 5.50 -17.51 -0.10 1.11 16 3 Si 0.93 19.10 29.55 -169.99 -5.02 14.07 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 7 C -0.32 -8.64 10.25 -14.81 -0.15 -8.80 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.95 3.74 -11.41 -0.04 -3.99 16 10 C -0.08 -2.01 11.49 -16.39 -0.19 -2.20 16 11 C -0.06 -1.39 6.90 -83.84 -0.58 -1.97 16 12 N -0.62 -10.84 5.47 -10.00 -0.05 -10.90 16 13 C 0.50 8.13 7.41 -10.99 -0.08 8.05 16 14 O -0.53 -10.47 11.20 5.54 0.06 -10.41 16 15 C -0.13 -1.47 5.09 -27.88 -0.14 -1.62 16 16 C -0.02 -0.26 2.07 -91.84 -0.19 -0.45 16 17 H 0.11 1.14 7.87 -51.93 -0.41 0.74 16 18 C -0.14 -1.76 5.29 -28.03 -0.15 -1.91 16 19 C 0.52 6.83 6.97 -11.18 -0.08 6.76 16 20 O -0.52 -8.99 17.91 5.55 0.10 -8.89 16 21 N -0.67 -6.52 5.36 -10.00 -0.05 -6.58 16 22 C 0.17 1.46 6.50 -83.75 -0.54 0.92 16 23 C -0.16 -1.09 9.92 -39.39 -0.39 -1.48 16 24 C -0.09 -0.55 10.04 -39.60 -0.40 -0.95 16 25 C -0.14 -0.92 10.04 -39.54 -0.40 -1.32 16 26 C -0.08 -0.58 9.69 -39.62 -0.38 -0.96 16 27 C -0.12 -1.04 4.91 -104.46 -0.51 -1.56 16 28 C -0.03 -0.85 10.85 -17.04 -0.18 -1.03 16 29 N -0.26 -7.64 10.40 30.80 0.32 -7.32 16 30 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.14 2.85 8.06 -52.49 -0.42 2.43 16 32 H 0.40 5.34 8.83 -40.82 -0.36 4.98 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.93 7.50 -51.93 -0.39 0.54 16 35 H 0.13 2.07 5.83 -51.93 -0.30 1.76 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.41 3.27 8.83 -40.82 -0.36 2.91 16 38 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 40 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.18 4.53 5.92 -52.49 -0.31 4.22 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -35.73 357.18 -7.76 -43.49 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.64 Total: 13.64 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -4.47 Total: -7.42 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 0.82 Total: -49.86 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.16 Total: -19.30 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.73 -7.76 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.336 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds