Wall clock time and date at job start Tue Mar 31 2020 23:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86801 * 120.00057 * 2 1 4 4 H 1.48501 * 109.46935 * 240.00619 * 3 2 1 5 5 H 1.48501 * 109.46807 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47495 * 120.00266 * 3 2 1 7 7 C 1.38982 * 120.00275 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 179.97438 * 7 2 1 9 9 N 1.37330 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.36486 * 126.06595 * 180.02562 * 9 7 2 11 11 C 1.35689 * 107.50681 * 179.97438 * 10 9 7 12 12 N 1.40595 * 126.08203 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99864 * 179.97438 * 12 11 10 14 14 O 1.21306 * 119.99803 * 0.02562 * 13 12 11 15 15 C 1.50696 * 120.00137 * 179.97438 * 13 12 11 16 16 C 1.53002 * 109.47303 * 180.02562 * 15 13 12 17 17 H 1.08993 * 109.46095 * 54.97310 * 16 15 13 18 18 C 1.52911 * 109.45736 * 294.99950 * 16 15 13 19 19 C 1.50496 * 109.90810 * 288.55127 * 18 16 15 20 20 O 1.21287 * 119.61673 * 144.83885 * 19 18 16 21 21 N 1.34565 * 120.76662 * 324.82104 * 19 18 16 22 22 C 1.39818 * 120.45681 * 0.79399 * 21 19 18 23 23 C 1.38870 * 120.19069 * 198.49065 * 22 21 19 24 24 C 1.38109 * 119.89190 * 179.97438 * 23 22 21 25 25 C 1.38306 * 120.08754 * 0.02562 * 24 23 22 26 26 C 1.38279 * 120.15148 * 0.02562 * 25 24 23 27 27 C 1.38104 * 120.03630 * 0.02562 * 26 25 24 28 28 C 1.40647 * 107.83427 * 0.22283 * 11 10 9 29 29 N 1.30909 * 108.38477 * 359.61906 * 28 11 10 30 30 H 0.97005 * 120.00206 * 359.97438 * 1 2 3 31 31 H 1.07999 * 126.25375 * 359.92659 * 10 9 7 32 32 H 0.96999 * 120.00089 * 359.97438 * 12 11 10 33 33 H 1.09000 * 109.46978 * 300.00347 * 15 13 12 34 34 H 1.08996 * 109.47197 * 59.99985 * 15 13 12 35 35 H 1.08994 * 109.40051 * 48.68757 * 18 16 15 36 36 H 1.08997 * 109.39564 * 168.42400 * 18 16 15 37 37 H 0.97003 * 119.76977 * 180.81785 * 21 19 18 38 38 H 1.07999 * 120.05102 * 359.95551 * 23 22 21 39 39 H 1.07997 * 119.95281 * 180.02562 * 24 23 22 40 40 H 1.08001 * 119.92179 * 180.02562 * 25 24 23 41 41 H 1.07998 * 119.98807 * 180.02562 * 26 25 24 42 42 H 1.07995 * 125.80834 * 179.73894 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1006 1.6964 -1.2126 5 1 1.2819 2.7464 -0.0006 6 1 3.1008 1.6965 1.2124 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0005 10 6 1.8750 -3.6404 -0.0005 11 6 0.8578 -4.5385 0.0000 12 7 0.9891 -5.9383 -0.0003 13 6 -0.1100 -6.7182 0.0009 14 8 -1.2126 -6.2124 0.0018 15 6 0.0306 -8.2186 0.0000 16 6 -1.3579 -8.8611 0.0010 17 1 -1.9360 -8.4778 -0.8398 18 6 -2.0748 -8.5226 1.3086 19 6 -1.4452 -9.2773 2.4483 20 8 -1.3697 -8.7580 3.5418 21 7 -0.9653 -10.5215 2.2684 22 6 -1.0286 -11.1306 1.0115 23 6 -0.9004 -12.5085 0.8959 24 6 -0.9643 -13.1038 -0.3486 25 6 -1.1553 -12.3295 -1.4786 26 6 -1.2823 -10.9571 -1.3668 27 6 -1.2181 -10.3558 -0.1252 28 6 -0.3512 -3.8199 -0.0048 29 7 -0.0715 -2.5410 0.0001 30 1 -0.4851 0.8401 0.0004 31 1 2.9301 -3.8708 -0.0017 32 1 1.8708 -6.3427 -0.0013 33 1 0.5750 -8.5319 -0.8909 34 1 0.5774 -8.5328 0.8890 35 1 -1.9979 -7.4519 1.4970 36 1 -3.1258 -8.8001 1.2275 37 1 -0.5732 -10.9992 3.0160 38 1 -0.7505 -13.1136 1.7779 39 1 -0.8651 -14.1754 -0.4396 40 1 -1.2053 -12.7978 -2.4505 41 1 -1.4317 -10.3550 -2.2508 42 1 -1.3418 -4.2500 -0.0096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931193071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:52:23 Heat of formation + Delta-G solvation = 10.647221 kcal Electronic energy + Delta-G solvation = -28295.307700 eV Core-core repulsion = 24240.742621 eV Total energy + Delta-G solvation = -4054.565079 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31808 -41.60689 -40.18889 -39.67170 -36.50941 -36.00201 -35.50451 -34.94435 -32.26598 -31.26649 -30.41559 -30.28631 -28.92894 -26.74241 -24.81090 -23.69234 -23.50454 -22.83339 -21.85094 -21.16711 -19.77800 -19.34903 -18.90182 -18.25783 -17.72280 -17.38420 -17.27238 -16.91824 -16.33625 -16.07750 -15.87176 -15.64628 -15.35792 -15.19215 -14.86699 -14.74277 -14.57825 -14.43959 -14.14636 -13.81359 -13.47007 -13.36265 -13.25963 -12.88139 -12.85624 -12.70172 -12.33703 -12.14124 -12.09653 -11.95736 -11.72574 -11.67978 -11.11763 -10.97467 -10.81860 -10.57530 -10.08842 -9.72794 -8.99255 -8.50697 -8.46291 -6.23356 0.24440 0.44973 1.23676 1.39235 1.47431 1.54996 1.55813 1.88456 2.00842 2.07200 2.32884 2.55026 2.87829 2.94947 3.09451 3.38522 3.55513 3.65573 3.85075 3.99692 4.06962 4.26581 4.35748 4.44089 4.50074 4.54979 4.57767 4.61870 4.69887 4.75313 5.00229 5.01521 5.02543 5.11570 5.13289 5.26484 5.30682 5.52065 5.54142 5.68751 5.77462 5.93354 5.96557 6.18769 6.33704 6.75192 6.78260 6.92427 7.42287 7.48545 7.70204 8.53021 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026806 B = 0.002201 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.308122 B =12716.695216 C =13119.531961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.355 4.355 8 H 0.140 0.860 9 N -0.169 5.169 10 C -0.084 4.084 11 C -0.043 4.043 12 N -0.620 5.620 13 C 0.495 3.505 14 O -0.568 6.568 15 C -0.117 4.117 16 C -0.018 4.018 17 H 0.107 0.893 18 C -0.142 4.142 19 C 0.522 3.478 20 O -0.575 6.575 21 N -0.653 5.653 22 C 0.144 3.856 23 C -0.152 4.152 24 C -0.088 4.088 25 C -0.139 4.139 26 C -0.083 4.083 27 C -0.124 4.124 28 C -0.059 4.059 29 N -0.311 5.311 30 H 0.276 0.724 31 H 0.186 0.814 32 H 0.418 0.582 33 H 0.133 0.867 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.417 0.583 38 H 0.145 0.855 39 H 0.153 0.847 40 H 0.148 0.852 41 H 0.143 0.857 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -27.830 -3.783 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.219 4.219 3 Si 0.838 3.162 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.486 4.486 8 H 0.157 0.843 9 N 0.062 4.938 10 C -0.235 4.235 11 C -0.149 4.149 12 N -0.265 5.265 13 C 0.284 3.716 14 O -0.447 6.447 15 C -0.156 4.156 16 C -0.037 4.037 17 H 0.125 0.875 18 C -0.181 4.181 19 C 0.312 3.688 20 O -0.454 6.454 21 N -0.298 5.298 22 C 0.049 3.951 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.158 4.158 26 C -0.101 4.101 27 C -0.127 4.127 28 C -0.235 4.235 29 N -0.144 5.144 30 H 0.086 0.914 31 H 0.203 0.797 32 H 0.255 0.745 33 H 0.151 0.849 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.132 0.868 37 H 0.256 0.744 38 H 0.163 0.837 39 H 0.170 0.830 40 H 0.166 0.834 41 H 0.161 0.839 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.330 -25.746 -3.281 25.988 hybrid contribution 0.827 -0.149 0.674 1.077 sum 2.157 -25.895 -2.608 26.115 Atomic orbital electron populations 1.70398 1.08417 1.29116 1.37428 1.26892 0.96494 1.04369 0.94179 0.84651 0.77540 0.73726 0.80264 1.17587 1.20304 1.17844 1.20561 0.92921 0.80955 1.54184 0.84278 1.44824 1.03639 1.04782 1.40602 1.22011 0.98832 0.84339 1.18280 1.17364 0.92723 0.83963 1.20886 1.42550 1.10048 1.02324 1.71548 1.21268 0.83633 0.90448 0.76251 1.90566 1.27121 1.76115 1.50941 1.21685 0.99418 0.88151 1.06389 1.19663 0.95056 0.91254 0.97725 0.87513 1.21889 1.01982 1.01780 0.92477 1.21053 0.76659 0.81336 0.89747 1.90769 1.57670 1.68277 1.28670 1.43522 1.59022 1.15665 1.11563 1.17861 1.00770 0.92791 0.83628 1.21040 1.04924 0.91201 1.00076 1.21342 0.96775 1.01342 0.91189 1.21456 1.00933 0.93294 1.00075 1.21128 0.97340 0.95653 0.95984 1.19408 1.06646 0.93521 0.93114 1.24198 0.99116 0.90861 1.09291 1.78135 0.92010 1.16744 1.27463 0.91433 0.79702 0.74495 0.84901 0.88820 0.88621 0.86793 0.74446 0.83722 0.82962 0.83445 0.83945 0.81304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.64 11.81 21.66 0.26 -48.38 16 2 C -0.01 -0.42 5.50 84.95 0.47 0.05 16 3 Si 1.02 39.32 29.55 68.60 2.03 41.35 16 4 H -0.25 -9.01 7.11 99.48 0.71 -8.31 16 5 H -0.28 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.25 -9.20 7.11 99.48 0.71 -8.50 16 7 C -0.36 -19.18 10.25 84.01 0.86 -18.32 16 8 H 0.14 6.50 7.83 -2.91 -0.02 6.47 16 9 N -0.17 -9.60 3.74 -190.01 -0.71 -10.31 16 10 C -0.08 -3.98 11.49 83.38 0.96 -3.02 16 11 C -0.04 -2.00 6.90 37.73 0.26 -1.74 16 12 N -0.62 -21.01 5.47 -303.92 -1.66 -22.68 16 13 C 0.50 16.04 7.41 87.66 0.65 16.69 16 14 O -0.57 -23.10 11.20 -3.11 -0.03 -23.14 16 15 C -0.12 -2.41 5.09 29.85 0.15 -2.25 16 16 C -0.02 -0.36 2.07 -11.58 -0.02 -0.39 16 17 H 0.11 2.18 7.87 -2.39 -0.02 2.17 16 18 C -0.14 -3.64 5.29 29.75 0.16 -3.49 16 19 C 0.52 13.96 6.97 87.63 0.61 14.57 16 20 O -0.57 -20.76 17.91 -3.05 -0.05 -20.82 16 21 N -0.65 -12.03 5.36 -304.07 -1.63 -13.66 16 22 C 0.14 2.19 6.50 38.17 0.25 2.44 16 23 C -0.15 -1.57 9.92 22.39 0.22 -1.35 16 24 C -0.09 -0.69 10.04 22.26 0.22 -0.47 16 25 C -0.14 -1.18 10.04 22.30 0.22 -0.96 16 26 C -0.08 -0.96 9.69 22.25 0.22 -0.74 16 27 C -0.12 -1.93 4.91 -19.76 -0.10 -2.03 16 28 C -0.06 -3.28 10.85 85.42 0.93 -2.36 16 29 N -0.31 -19.16 10.40 -56.47 -0.59 -19.75 16 30 H 0.28 14.98 8.31 -92.70 -0.77 14.21 16 31 H 0.19 6.89 8.06 -2.91 -0.02 6.87 16 32 H 0.42 10.31 8.83 -92.71 -0.82 9.49 16 33 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.09 1.86 7.50 -2.39 -0.02 1.84 16 35 H 0.10 3.22 5.83 -2.39 -0.01 3.21 16 36 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.42 6.19 8.83 -92.71 -0.82 5.37 16 38 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 39 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.15 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.17 9.34 5.92 -2.91 -0.02 9.32 16 Total: -1.00 -84.12 357.18 3.13 -81.00 By element: Atomic # 1 Polarization: 40.29 SS G_CDS: -0.53 Total: 39.76 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.06 Total: -3.37 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -4.33 Total: -114.78 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.09 Total: -43.95 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -84.12 3.13 -81.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931193071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.644 kcal (2) G-P(sol) polarization free energy of solvation -84.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds