Wall clock time and date at job start Tue Mar 31 2020 23:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.46502 * 119.99727 * 270.00056 * 3 2 1 5 5 C 1.50697 * 109.47146 * 269.99835 * 4 3 2 6 6 H 1.08007 * 119.99735 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00440 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99727 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00458 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47278 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47116 * 120.00036 * 9 7 5 12 12 H 1.48499 * 109.47006 * 239.99539 * 9 7 5 13 13 C 1.34777 * 120.00148 * 90.00147 * 3 2 1 14 14 O 1.21272 * 120.00291 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99644 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46624 * 179.97438 * 15 13 3 17 17 C 1.46462 * 111.00392 * 295.98238 * 16 15 13 18 18 C 1.53243 * 109.86310 * 162.23792 * 17 16 15 19 19 S 1.81899 * 108.50836 * 62.00096 * 18 17 16 20 20 C 1.81899 * 101.91111 * 308.69688 * 19 18 17 21 21 H 1.08998 * 109.79815 * 291.50033 * 20 19 18 22 22 C 1.53006 * 109.62987 * 171.01178 * 20 19 18 23 23 F 1.39900 * 109.46764 * 300.98431 * 22 20 19 24 24 F 1.39897 * 109.47129 * 60.98409 * 22 20 19 25 25 F 1.39903 * 109.46814 * 180.98902 * 22 20 19 26 26 C 1.46466 * 110.99688 * 169.99811 * 16 15 13 27 27 H 1.08999 * 109.47290 * 299.99797 * 1 2 3 28 28 H 1.08997 * 109.47471 * 60.00244 * 1 2 3 29 29 H 1.09006 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46824 * 239.99590 * 2 1 3 31 31 H 1.09002 * 109.46896 * 120.00168 * 2 1 3 32 32 H 1.09000 * 109.47145 * 29.99831 * 4 3 2 33 33 H 1.09001 * 109.46590 * 149.99884 * 4 3 2 34 34 H 0.96998 * 120.00210 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47152 * 60.00432 * 15 13 3 36 36 H 1.09001 * 109.46938 * 299.99842 * 15 13 3 37 37 H 1.09003 * 109.40370 * 282.35817 * 17 16 15 38 38 H 1.09005 * 109.40801 * 42.19182 * 17 16 15 39 39 H 1.09001 * 109.63077 * 181.70960 * 18 17 16 40 40 H 1.09004 * 109.63024 * 302.09533 * 18 17 16 41 41 H 1.09005 * 109.40508 * 77.64675 * 26 16 15 42 42 H 1.09002 * 109.41191 * 317.88960 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8774 8 7 3.3493 3.1264 -3.6177 9 14 5.9134 2.0963 -3.4171 10 1 6.6004 1.2393 -2.4177 11 1 5.9204 1.4181 -4.7382 12 1 6.6214 3.3971 -3.5248 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2061 3.5888 17 6 3.7348 2.5462 3.5985 18 6 3.9667 3.7928 4.4591 19 16 3.4633 3.4177 6.1663 20 6 1.7907 2.7445 5.9253 21 1 1.1193 3.5352 5.5904 22 6 1.2778 2.1584 7.2423 23 9 2.1466 1.1503 7.6737 24 9 1.2173 3.1673 8.2095 25 9 0.0006 1.6216 7.0477 26 6 1.8584 1.6422 4.8629 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6753 3.5169 -4.4436 35 1 2.6211 0.4187 2.5302 36 1 0.9432 1.0126 2.5298 37 1 4.3035 1.7118 4.0090 38 1 4.0669 2.7441 2.5793 39 1 5.0232 4.0602 4.4392 40 1 3.3721 4.6205 4.0724 41 1 2.5575 0.8706 5.1856 42 1 0.8695 1.2022 4.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932081042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:14 Heat of formation + Delta-G solvation = -171.106301 kcal Electronic energy + Delta-G solvation = -28520.424551 eV Core-core repulsion = 24019.272508 eV Total energy + Delta-G solvation = -4501.152043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.40885 -47.91136 -47.85196 -39.69312 -37.70536 -35.34227 -33.00900 -32.78016 -31.29852 -30.17413 -28.08622 -26.49892 -25.06004 -23.16553 -23.00590 -22.48251 -21.35135 -19.00186 -18.66790 -18.61133 -17.93537 -16.93545 -16.55789 -16.40566 -15.88786 -15.41639 -14.91846 -14.85340 -14.76183 -14.56379 -14.29691 -14.16244 -14.07599 -14.04972 -13.98237 -13.74837 -13.64371 -13.43760 -12.93863 -12.78200 -12.36604 -12.22990 -12.07609 -11.93550 -11.87456 -11.56745 -11.26877 -11.06482 -10.95101 -10.77513 -10.61068 -10.20716 -10.06699 -9.68105 -9.09471 -8.49821 -8.48788 -8.00160 -7.74077 -6.10478 -4.15662 1.08645 2.02016 2.35472 3.15064 3.24770 3.27912 3.33296 3.36702 3.50166 3.72301 3.95092 4.01845 4.34310 4.38889 4.59995 4.74862 4.89595 5.04399 5.09813 5.15390 5.20819 5.23945 5.26817 5.36737 5.39028 5.56070 5.70196 5.84741 5.89162 5.95146 6.15785 6.40125 6.61167 6.79188 7.01985 7.38211 7.46944 7.85672 8.16568 8.33226 8.83088 9.00661 9.49885 10.97530 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.002947 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.694194 B = 9497.487353 C =10483.448980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.042 3.958 16 N -0.531 5.531 17 C 0.048 3.952 18 C -0.067 4.067 19 S -0.222 6.222 20 C -0.113 4.113 21 H 0.139 0.861 22 C 0.478 3.522 23 F -0.171 7.171 24 F -0.172 7.172 25 F -0.175 7.175 26 C 0.059 3.941 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.046 0.954 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.103 0.897 41 H 0.062 0.938 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.139 -5.763 18.804 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.401 6.401 15 C -0.089 4.089 16 N -0.255 5.255 17 C -0.081 4.081 18 C -0.215 4.215 19 S 0.004 5.996 20 C -0.243 4.243 21 H 0.157 0.843 22 C 0.422 3.578 23 F -0.153 7.153 24 F -0.153 7.153 25 F -0.156 7.156 26 C -0.070 4.070 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.604 -4.472 19.519 20.547 hybrid contribution 0.526 -1.119 -1.200 1.723 sum -4.078 -5.591 18.320 19.583 Atomic orbital electron populations 1.22225 0.96683 1.01472 1.02406 1.21433 0.93595 0.84217 1.02669 1.48272 1.63728 1.13207 1.07666 1.19271 0.96254 0.93649 0.77967 1.21444 0.96887 1.31900 1.06335 0.92507 1.24933 0.97830 0.94904 0.96398 1.69940 1.35587 1.33374 1.14316 0.86461 0.84619 0.78067 0.78365 1.19851 1.20954 1.20850 1.20012 0.79072 0.87083 0.84657 1.90645 1.45089 1.17626 1.86727 1.22059 1.02682 0.94068 0.90080 1.60606 1.18979 1.44662 1.01276 1.22469 0.86829 0.95465 1.03353 1.23636 1.05252 1.01883 0.90724 1.87050 1.14210 1.82900 1.15481 1.24480 1.01655 1.03786 0.94422 0.84260 1.19664 0.75659 0.76477 0.86042 1.93220 1.69386 1.61634 1.91042 1.93226 1.96135 1.60142 1.65832 1.93211 1.40559 1.86726 1.95147 1.22167 1.02943 0.93259 0.88667 0.93085 0.91926 0.92126 0.89832 0.91933 0.95028 0.93838 0.92726 0.91914 0.88072 0.93621 0.86340 0.86622 0.87850 0.91961 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.16 0.38 -1.68 16 2 C 0.11 1.53 5.93 -4.04 -0.02 1.50 16 3 N -0.60 -11.58 2.46 -175.06 -0.43 -12.01 16 4 C 0.25 6.14 5.16 -5.19 -0.03 6.12 16 5 C -0.53 -14.28 9.38 -34.44 -0.32 -14.61 16 6 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.86 13.29 55.43 0.74 -25.12 16 9 Si 0.90 21.21 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.51 9.48 7.21 -10.98 -0.08 9.40 16 14 O -0.52 -11.92 13.91 5.56 0.08 -11.84 16 15 C 0.04 0.55 4.01 -4.97 -0.02 0.53 16 16 N -0.53 -6.84 4.17 -236.48 -0.99 -7.83 16 17 C 0.05 0.63 4.95 -3.94 -0.02 0.61 16 18 C -0.07 -0.79 6.69 37.28 0.25 -0.54 16 19 S -0.22 -2.57 21.26 -107.50 -2.29 -4.85 16 20 C -0.11 -1.18 2.75 -26.60 -0.07 -1.25 16 21 H 0.14 1.41 8.14 -51.93 -0.42 0.99 16 22 C 0.48 4.91 2.68 37.16 0.10 5.01 16 23 F -0.17 -1.87 16.52 2.25 0.04 -1.83 16 24 F -0.17 -1.91 17.05 2.25 0.04 -1.87 16 25 F -0.17 -1.73 16.78 2.25 0.04 -1.70 16 26 C 0.06 0.61 4.47 -3.93 -0.02 0.59 16 27 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 31 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 32 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.06 0.74 7.39 -51.93 -0.38 0.35 16 36 H 0.10 1.12 6.88 -51.93 -0.36 0.76 16 37 H 0.05 0.56 7.92 -51.93 -0.41 0.15 16 38 H 0.12 1.96 5.61 -51.93 -0.29 1.67 16 39 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.06 0.62 7.63 -51.93 -0.40 0.23 16 42 H 0.10 0.84 7.38 -51.93 -0.38 0.46 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -30.86 362.09 -8.10 -38.97 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.81 Total: -0.85 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 0.05 Total: 7.29 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.68 Total: -44.95 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.57 SS G_CDS: -2.29 Total: -4.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.86 -8.10 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932081042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.140 kcal (2) G-P(sol) polarization free energy of solvation -30.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds