Wall clock time and date at job start Tue Mar 31 2020 23:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47135 * 2 1 4 4 C 1.46502 * 119.99727 * 270.00056 * 3 2 1 5 5 C 1.50697 * 109.47146 * 269.99835 * 4 3 2 6 6 H 1.08007 * 119.99735 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00440 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99727 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00458 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47278 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47116 * 120.00036 * 9 7 5 12 12 H 1.48499 * 109.47006 * 239.99539 * 9 7 5 13 13 C 1.34777 * 120.00148 * 90.00147 * 3 2 1 14 14 O 1.21272 * 120.00291 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99644 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46624 * 179.97438 * 15 13 3 17 17 C 1.46462 * 111.00392 * 295.98238 * 16 15 13 18 18 C 1.53243 * 109.86310 * 162.23792 * 17 16 15 19 19 S 1.81899 * 108.50836 * 62.00096 * 18 17 16 20 20 C 1.81899 * 101.91111 * 308.69688 * 19 18 17 21 21 H 1.08998 * 109.79815 * 291.50033 * 20 19 18 22 22 C 1.53006 * 109.62987 * 171.01178 * 20 19 18 23 23 F 1.39900 * 109.46764 * 300.98431 * 22 20 19 24 24 F 1.39897 * 109.47129 * 60.98409 * 22 20 19 25 25 F 1.39903 * 109.46814 * 180.98902 * 22 20 19 26 26 C 1.46466 * 110.99688 * 169.99811 * 16 15 13 27 27 H 1.08999 * 109.47290 * 299.99797 * 1 2 3 28 28 H 1.08997 * 109.47471 * 60.00244 * 1 2 3 29 29 H 1.09006 * 109.47087 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46824 * 239.99590 * 2 1 3 31 31 H 1.09002 * 109.46896 * 120.00168 * 2 1 3 32 32 H 1.09000 * 109.47145 * 29.99831 * 4 3 2 33 33 H 1.09001 * 109.46590 * 149.99884 * 4 3 2 34 34 H 0.96998 * 120.00210 * 180.02562 * 8 7 5 35 35 H 1.08992 * 109.47152 * 60.00432 * 15 13 3 36 36 H 1.09001 * 109.46938 * 299.99842 * 15 13 3 37 37 H 1.09003 * 109.40370 * 282.35817 * 17 16 15 38 38 H 1.09005 * 109.40801 * 42.19182 * 17 16 15 39 39 H 1.09001 * 109.63077 * 181.70960 * 18 17 16 40 40 H 1.09004 * 109.63024 * 302.09533 * 18 17 16 41 41 H 1.09005 * 109.40508 * 77.64675 * 26 16 15 42 42 H 1.09002 * 109.41191 * 317.88960 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0961 7 6 4.1494 2.3904 -2.8774 8 7 3.3493 3.1264 -3.6177 9 14 5.9134 2.0963 -3.4171 10 1 6.6004 1.2393 -2.4177 11 1 5.9204 1.4181 -4.7382 12 1 6.6214 3.3971 -3.5248 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3102 2.2061 3.5888 17 6 3.7348 2.5462 3.5985 18 6 3.9667 3.7928 4.4591 19 16 3.4633 3.4177 6.1663 20 6 1.7907 2.7445 5.9253 21 1 1.1193 3.5352 5.5904 22 6 1.2778 2.1584 7.2423 23 9 2.1466 1.1503 7.6737 24 9 1.2173 3.1673 8.2095 25 9 0.0006 1.6216 7.0477 26 6 1.8584 1.6422 4.8629 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.5817 1.6876 -2.0284 33 1 2.0955 3.1410 -1.1384 34 1 3.6753 3.5169 -4.4436 35 1 2.6211 0.4187 2.5302 36 1 0.9432 1.0126 2.5298 37 1 4.3035 1.7118 4.0090 38 1 4.0669 2.7441 2.5793 39 1 5.0232 4.0602 4.4392 40 1 3.3721 4.6205 4.0724 41 1 2.5575 0.8706 5.1856 42 1 0.8695 1.2022 4.7339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932081042.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:14 Heat of formation + Delta-G solvation = -190.186599 kcal Electronic energy + Delta-G solvation = -28521.251935 eV Core-core repulsion = 24019.272508 eV Total energy + Delta-G solvation = -4501.979427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.22388 -48.71807 -48.67847 -41.02763 -38.84915 -36.84817 -34.91692 -33.78179 -32.39482 -31.55062 -29.56001 -27.86049 -26.16548 -24.74954 -24.04906 -23.69347 -22.36346 -19.97024 -19.79998 -19.49955 -18.89013 -18.61084 -18.04690 -17.52267 -17.25543 -16.61472 -16.46393 -15.80267 -15.71822 -15.63289 -15.46093 -15.24164 -15.10564 -14.90760 -14.82238 -14.77896 -14.61338 -14.51554 -14.38068 -14.08215 -13.66978 -13.41016 -13.23101 -13.18926 -13.09536 -12.85935 -12.78141 -12.65918 -12.45604 -12.13781 -12.03292 -11.80938 -11.65713 -11.03750 -10.64309 -10.51117 -9.53170 -9.38279 -8.91728 -8.21448 -6.36127 0.21796 1.10838 1.36711 1.38682 1.49463 1.50509 1.87405 2.13221 2.37959 2.55344 2.74304 2.97025 3.08367 3.15472 3.51496 3.62591 3.76922 3.91700 4.05875 4.10923 4.19285 4.31106 4.32884 4.40460 4.47718 4.51894 4.67771 4.78463 4.88099 4.96108 5.02521 5.08496 5.24515 5.41819 5.59955 5.65129 5.84439 5.90010 6.07995 6.72702 6.85088 7.30477 7.54116 8.85469 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.002947 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.694194 B = 9497.487353 C =10483.448980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.283 1.283 13 C 0.497 3.503 14 O -0.575 6.575 15 C 0.056 3.944 16 N -0.546 5.546 17 C 0.053 3.947 18 C -0.062 4.062 19 S -0.228 6.228 20 C -0.110 4.110 21 H 0.142 0.858 22 C 0.484 3.516 23 F -0.174 7.174 24 F -0.178 7.178 25 F -0.170 7.170 26 C 0.063 3.937 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.018 0.982 33 H -0.004 1.004 34 H 0.266 0.734 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.212 -8.077 20.540 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.144 3.856 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.209 1.209 13 C 0.285 3.715 14 O -0.455 6.455 15 C -0.073 4.073 16 N -0.271 5.271 17 C -0.076 4.076 18 C -0.210 4.210 19 S -0.002 6.002 20 C -0.240 4.240 21 H 0.160 0.840 22 C 0.428 3.572 23 F -0.155 7.155 24 F -0.159 7.159 25 F -0.151 7.151 26 C -0.066 4.066 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.036 0.964 33 H 0.014 0.986 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.144 0.856 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -4.699 -6.834 21.284 22.843 hybrid contribution 0.492 -0.381 -1.704 1.814 sum -4.207 -7.215 19.580 21.287 Atomic orbital electron populations 1.22160 0.94626 1.03459 1.01727 1.21751 0.95262 0.81392 1.03930 1.48274 1.64109 1.15044 1.06167 1.18645 0.95091 0.91474 0.80434 1.21734 0.97876 1.31641 1.06398 0.92732 1.25838 1.02182 0.94583 0.96556 1.70062 1.37651 1.34372 1.14829 0.85401 0.79273 0.77942 0.78389 1.18932 1.19723 1.20921 1.21054 0.77589 0.86740 0.86146 1.90625 1.47096 1.20149 1.87630 1.21984 1.05010 0.93692 0.86660 1.60514 1.18686 1.45481 1.02405 1.22315 0.87498 0.96397 1.01402 1.23528 1.05713 1.00837 0.90951 1.87067 1.15232 1.83160 1.14694 1.24502 1.00779 1.04048 0.94716 0.84016 1.19537 0.75742 0.76240 0.85659 1.93219 1.69516 1.61692 1.91066 1.93219 1.96169 1.60457 1.66076 1.93225 1.40194 1.86608 1.95087 1.22229 1.04327 0.93089 0.86988 0.91846 0.94557 0.88712 0.91199 0.88008 0.96383 0.98603 0.92520 0.89382 0.84914 0.92289 0.90040 0.85615 0.89478 0.91001 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 16 2 C 0.10 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -23.60 2.46 -826.15 -2.03 -25.63 16 4 C 0.27 13.79 5.16 85.63 0.44 14.23 16 5 C -0.54 -29.98 9.38 25.60 0.24 -29.74 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -55.48 13.29 21.45 0.28 -55.19 16 9 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 13 C 0.50 18.55 7.21 87.66 0.63 19.19 16 14 O -0.58 -27.25 13.91 -3.01 -0.04 -27.29 16 15 C 0.06 1.33 4.01 85.56 0.34 1.67 16 16 N -0.55 -12.96 4.17 -902.09 -3.76 -16.73 16 17 C 0.05 1.37 4.95 86.47 0.43 1.79 16 18 C -0.06 -1.45 6.69 72.06 0.48 -0.97 16 19 S -0.23 -4.92 21.26 -56.49 -1.20 -6.13 16 20 C -0.11 -2.03 2.75 30.68 0.08 -1.95 16 21 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 22 C 0.48 8.74 2.68 71.98 0.19 8.93 16 23 F -0.17 -3.33 16.52 44.97 0.74 -2.58 16 24 F -0.18 -3.62 17.05 44.97 0.77 -2.86 16 25 F -0.17 -2.86 16.78 44.97 0.75 -2.10 16 26 C 0.06 1.08 4.47 86.47 0.39 1.46 16 27 H 0.06 1.23 7.22 -2.39 -0.02 1.22 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.10 1.97 6.44 -2.39 -0.02 1.96 16 32 H 0.02 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 34 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.09 1.69 7.39 -2.39 -0.02 1.67 16 36 H 0.13 2.32 6.88 -2.39 -0.02 2.30 16 37 H 0.06 1.33 7.92 -2.39 -0.02 1.31 16 38 H 0.08 2.77 5.61 -2.38 -0.01 2.76 16 39 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.07 1.15 7.63 -2.38 -0.02 1.13 16 42 H 0.12 1.53 7.38 -2.39 -0.02 1.52 16 Total: -1.00 -70.74 362.09 3.52 -67.22 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.04 Total: 9.41 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 4.94 Total: 15.89 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -5.51 Total: -97.54 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 2.26 Total: -7.54 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -1.20 Total: -6.13 kcal Total: -70.74 3.52 -67.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932081042.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.966 kcal (2) G-P(sol) polarization free energy of solvation -70.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds