Wall clock time and date at job start Tue Mar 31 2020 23:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46490 * 109.47432 * 2 1 4 4 C 1.46503 * 120.00279 * 270.00229 * 3 2 1 5 5 C 1.50702 * 109.47025 * 270.00298 * 4 3 2 6 6 H 1.08001 * 119.99853 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99773 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99995 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47239 * 90.00142 * 9 7 5 11 11 H 1.48496 * 109.47424 * 210.00539 * 9 7 5 12 12 H 1.48506 * 109.47178 * 330.00686 * 9 7 5 13 13 C 1.34781 * 120.00158 * 89.99977 * 3 2 1 14 14 O 1.21278 * 119.99748 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99907 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47158 * 180.02562 * 15 13 3 17 17 C 1.46462 * 110.99952 * 66.04535 * 16 15 13 18 18 C 1.53256 * 109.85672 * 197.76740 * 17 16 15 19 19 S 1.81894 * 108.50282 * 297.99593 * 18 17 16 20 20 C 1.81893 * 101.91583 * 51.30729 * 19 18 17 21 21 H 1.08995 * 109.63269 * 68.59617 * 20 19 18 22 22 C 1.53008 * 109.62999 * 188.98757 * 20 19 18 23 23 F 1.39900 * 109.46948 * 179.97438 * 22 20 19 24 24 F 1.39897 * 109.47244 * 299.99792 * 22 20 19 25 25 F 1.39901 * 109.46912 * 60.00049 * 22 20 19 26 26 C 1.46470 * 110.99859 * 192.02536 * 16 15 13 27 27 H 1.08997 * 109.46834 * 59.99572 * 1 2 3 28 28 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46658 * 299.99988 * 1 2 3 30 30 H 1.09002 * 109.47042 * 239.99700 * 2 1 3 31 31 H 1.09004 * 109.47166 * 120.00643 * 2 1 3 32 32 H 1.09007 * 109.46533 * 29.99665 * 4 3 2 33 33 H 1.08995 * 109.47570 * 149.99401 * 4 3 2 34 34 H 0.96996 * 120.00293 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47234 * 59.99754 * 15 13 3 36 36 H 1.08999 * 109.47072 * 299.99800 * 15 13 3 37 37 H 1.08994 * 109.40996 * 77.65065 * 17 16 15 38 38 H 1.08998 * 109.40618 * 317.88205 * 17 16 15 39 39 H 1.09001 * 109.62909 * 57.70445 * 18 17 16 40 40 H 1.09001 * 109.63061 * 178.29176 * 18 17 16 41 41 H 1.09004 * 109.40685 * 42.11731 * 26 16 15 42 42 H 1.08998 * 109.34015 * 282.31008 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2306 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2570 9 14 3.0132 3.4361 -3.9286 10 1 3.1160 4.8561 -3.5067 11 1 3.4067 3.3138 -5.3553 12 1 1.6135 2.9696 -3.7595 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1671 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2062 3.5889 17 6 1.3854 3.3414 3.6271 18 6 1.9773 4.4663 4.4832 19 16 2.1864 3.8499 6.1818 20 6 3.1005 2.3011 5.9094 21 1 4.1065 2.5269 5.5559 22 6 3.1804 1.5143 7.2192 23 9 3.8835 0.3237 7.0058 24 9 3.8426 2.2809 8.1841 25 9 1.8878 1.2185 7.6651 26 6 2.3539 1.4744 4.8569 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 5.7177 2.5745 -4.0829 35 1 2.6229 0.4186 2.5299 36 1 0.9446 1.0114 2.5303 37 1 0.4360 3.0211 4.0561 38 1 1.2187 3.7070 2.6138 39 1 2.9453 4.7631 4.0795 40 1 1.3003 5.3206 4.4844 41 1 2.8693 0.5252 4.7097 42 1 1.3368 1.2849 5.1998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932081046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:17 Heat of formation + Delta-G solvation = -166.359629 kcal Electronic energy + Delta-G solvation = -28538.828222 eV Core-core repulsion = 24037.882010 eV Total energy + Delta-G solvation = -4500.946212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.40445 -47.90088 -47.85322 -39.77501 -37.80069 -35.44765 -33.00587 -32.73095 -31.38925 -30.42189 -28.41226 -26.75995 -25.12921 -23.12631 -23.02365 -22.29495 -21.34759 -18.99864 -18.67686 -18.61581 -17.98025 -17.00844 -16.91149 -16.56664 -15.94809 -15.37409 -15.02577 -14.84146 -14.77166 -14.67815 -14.31708 -14.26968 -14.08552 -13.99956 -13.92253 -13.70635 -13.61273 -13.49882 -13.23550 -12.65290 -12.50379 -12.42468 -12.20820 -12.06724 -11.87521 -11.80039 -11.49276 -11.12258 -11.04189 -10.78766 -10.55929 -10.22289 -10.11640 -9.58247 -9.18785 -8.63185 -8.56647 -8.03651 -7.80407 -6.12627 -4.11748 1.05726 1.98252 2.34171 3.10161 3.21606 3.25182 3.30880 3.32797 3.48614 3.68354 3.91794 3.96099 4.33187 4.35224 4.57755 4.66842 4.82618 4.97922 5.04296 5.10230 5.15555 5.17318 5.21823 5.29158 5.38156 5.45651 5.59891 5.70397 5.78828 5.86742 6.05841 6.28746 6.50683 6.69232 6.73358 6.88015 7.25970 7.56139 8.15328 8.42053 8.85824 8.92305 9.47273 11.00771 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002891 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.881301 B = 9683.103692 C = 9928.792881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.219 3.781 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.509 3.491 14 O -0.522 6.522 15 C 0.043 3.957 16 N -0.531 5.531 17 C 0.052 3.948 18 C -0.069 4.069 19 S -0.221 6.221 20 C -0.114 4.114 21 H 0.141 0.859 22 C 0.478 3.522 23 F -0.174 7.174 24 F -0.172 7.172 25 F -0.172 7.172 26 C 0.061 3.939 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.029 0.971 33 H 0.035 0.965 34 H 0.265 0.735 35 H 0.104 0.896 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.662 -3.536 18.358 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.098 3.902 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.399 6.399 15 C -0.087 4.087 16 N -0.255 5.255 17 C -0.076 4.076 18 C -0.217 4.217 19 S 0.005 5.995 20 C -0.244 4.244 21 H 0.159 0.841 22 C 0.422 3.578 23 F -0.155 7.155 24 F -0.153 7.153 25 F -0.154 7.154 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.133 0.867 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.198 -2.233 19.104 21.770 hybrid contribution -0.621 -0.508 -1.456 1.663 sum -10.820 -2.741 17.647 20.881 Atomic orbital electron populations 1.22234 0.96738 1.01675 1.02148 1.21458 0.93368 0.83881 1.03210 1.47949 1.64153 1.13405 1.06961 1.19636 0.97355 0.93277 0.79921 1.21315 0.95299 1.32998 1.07156 0.90762 1.24857 0.94969 0.95792 0.97355 1.69892 1.15119 1.44911 1.23558 0.86859 0.81399 0.81608 0.79842 1.19922 1.21065 1.19132 1.20053 0.78738 0.87144 0.84641 1.90657 1.44537 1.17920 1.86744 1.22033 1.01029 0.95805 0.89835 1.60539 1.53631 1.09669 1.01694 1.22384 0.92365 0.90259 1.02643 1.23637 1.06551 1.00346 0.91203 1.87037 1.73247 1.24128 1.15086 1.24498 1.07494 0.97805 0.94618 0.84104 1.19648 0.74139 0.78163 0.85864 1.93220 1.79165 1.48307 1.94836 1.93228 1.80961 1.75156 1.65947 1.93215 1.37911 1.93603 1.90625 1.22169 0.99898 0.96203 0.88640 0.92129 0.91882 0.93183 0.89546 0.91511 0.95296 0.94653 0.92530 0.87793 0.91847 0.93610 0.87156 0.87724 0.86668 0.88400 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.10 1.46 5.93 -4.05 -0.02 1.44 16 3 N -0.59 -11.12 2.46 -175.06 -0.43 -11.55 16 4 C 0.22 5.06 4.23 -5.19 -0.02 5.04 16 5 C -0.53 -14.73 9.94 -34.44 -0.34 -15.08 16 6 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.23 13.96 55.43 0.77 -26.45 16 9 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 13 C 0.51 9.29 7.21 -10.98 -0.08 9.21 16 14 O -0.52 -11.62 14.09 5.56 0.08 -11.54 16 15 C 0.04 0.56 4.01 -4.98 -0.02 0.54 16 16 N -0.53 -6.70 4.13 -236.49 -0.98 -7.67 16 17 C 0.05 0.63 4.95 -3.93 -0.02 0.61 16 18 C -0.07 -0.76 6.69 37.29 0.25 -0.52 16 19 S -0.22 -2.47 21.26 -107.50 -2.29 -4.75 16 20 C -0.11 -1.19 2.75 -26.60 -0.07 -1.26 16 21 H 0.14 1.50 8.14 -51.93 -0.42 1.07 16 22 C 0.48 4.96 2.68 37.16 0.10 5.06 16 23 F -0.17 -1.79 16.82 2.25 0.04 -1.75 16 24 F -0.17 -1.94 17.02 2.25 0.04 -1.90 16 25 F -0.17 -1.85 16.51 2.25 0.04 -1.81 16 26 C 0.06 0.62 4.47 -3.93 -0.02 0.60 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.52 7.22 -51.93 -0.38 0.14 16 30 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 32 H 0.03 0.64 7.13 -51.92 -0.37 0.27 16 33 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.10 1.19 7.05 -51.93 -0.37 0.82 16 36 H 0.06 0.66 7.16 -51.93 -0.37 0.29 16 37 H 0.05 0.48 7.91 -51.93 -0.41 0.07 16 38 H 0.11 1.58 5.81 -51.93 -0.30 1.28 16 39 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 0.88 7.38 -51.93 -0.38 0.50 16 42 H 0.06 0.59 7.61 -51.93 -0.40 0.20 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -32.47 358.74 -7.74 -40.21 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.79 Total: -0.68 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 0.03 Total: 6.10 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: -0.63 Total: -45.68 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -2.29 Total: -4.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -7.74 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932081046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.148 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds