Wall clock time and date at job start Tue Mar 31 2020 23:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46490 * 109.47432 * 2 1 4 4 C 1.46503 * 120.00279 * 270.00229 * 3 2 1 5 5 C 1.50702 * 109.47025 * 270.00298 * 4 3 2 6 6 H 1.08001 * 119.99853 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99773 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99995 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00270 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47239 * 90.00142 * 9 7 5 11 11 H 1.48496 * 109.47424 * 210.00539 * 9 7 5 12 12 H 1.48506 * 109.47178 * 330.00686 * 9 7 5 13 13 C 1.34781 * 120.00158 * 89.99977 * 3 2 1 14 14 O 1.21278 * 119.99748 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99907 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47158 * 180.02562 * 15 13 3 17 17 C 1.46462 * 110.99952 * 66.04535 * 16 15 13 18 18 C 1.53256 * 109.85672 * 197.76740 * 17 16 15 19 19 S 1.81894 * 108.50282 * 297.99593 * 18 17 16 20 20 C 1.81893 * 101.91583 * 51.30729 * 19 18 17 21 21 H 1.08995 * 109.63269 * 68.59617 * 20 19 18 22 22 C 1.53008 * 109.62999 * 188.98757 * 20 19 18 23 23 F 1.39900 * 109.46948 * 179.97438 * 22 20 19 24 24 F 1.39897 * 109.47244 * 299.99792 * 22 20 19 25 25 F 1.39901 * 109.46912 * 60.00049 * 22 20 19 26 26 C 1.46470 * 110.99859 * 192.02536 * 16 15 13 27 27 H 1.08997 * 109.46834 * 59.99572 * 1 2 3 28 28 H 1.09001 * 109.47401 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46658 * 299.99988 * 1 2 3 30 30 H 1.09002 * 109.47042 * 239.99700 * 2 1 3 31 31 H 1.09004 * 109.47166 * 120.00643 * 2 1 3 32 32 H 1.09007 * 109.46533 * 29.99665 * 4 3 2 33 33 H 1.08995 * 109.47570 * 149.99401 * 4 3 2 34 34 H 0.96996 * 120.00293 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47234 * 59.99754 * 15 13 3 36 36 H 1.08999 * 109.47072 * 299.99800 * 15 13 3 37 37 H 1.08994 * 109.40996 * 77.65065 * 17 16 15 38 38 H 1.08998 * 109.40618 * 317.88205 * 17 16 15 39 39 H 1.09001 * 109.62909 * 57.70445 * 18 17 16 40 40 H 1.09001 * 109.63061 * 178.29176 * 18 17 16 41 41 H 1.09004 * 109.40685 * 42.11731 * 26 16 15 42 42 H 1.08998 * 109.34015 * 282.31008 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2306 -1.0959 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1841 -3.2570 9 14 3.0132 3.4361 -3.9286 10 1 3.1160 4.8561 -3.5067 11 1 3.4067 3.3138 -5.3553 12 1 1.6135 2.9696 -3.7595 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1597 1.1671 15 6 1.9924 1.3059 2.4723 16 7 2.3100 2.2062 3.5889 17 6 1.3854 3.3414 3.6271 18 6 1.9773 4.4663 4.4832 19 16 2.1864 3.8499 6.1818 20 6 3.1005 2.3011 5.9094 21 1 4.1065 2.5269 5.5559 22 6 3.1804 1.5143 7.2192 23 9 3.8835 0.3237 7.0058 24 9 3.8426 2.2809 8.1841 25 9 1.8878 1.2185 7.6651 26 6 2.3539 1.4744 4.8569 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.5817 1.6876 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 5.7177 2.5745 -4.0829 35 1 2.6229 0.4186 2.5299 36 1 0.9446 1.0114 2.5303 37 1 0.4360 3.0211 4.0561 38 1 1.2187 3.7070 2.6138 39 1 2.9453 4.7631 4.0795 40 1 1.3003 5.3206 4.4844 41 1 2.8693 0.5252 4.7097 42 1 1.3368 1.2849 5.1998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932081046.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:16 Heat of formation + Delta-G solvation = -187.656067 kcal Electronic energy + Delta-G solvation = -28539.751705 eV Core-core repulsion = 24037.882010 eV Total energy + Delta-G solvation = -4501.869695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.23895 -48.73611 -48.69041 -41.05827 -38.88550 -36.89020 -34.86354 -33.80324 -32.47529 -31.75319 -29.87778 -27.99213 -26.15689 -24.40800 -24.10727 -23.62483 -22.34152 -19.95410 -19.81355 -19.51515 -19.10227 -18.89647 -18.08519 -17.54838 -17.26892 -16.59381 -16.27727 -16.05076 -15.70528 -15.65030 -15.56762 -15.12874 -15.05773 -14.89413 -14.83682 -14.78152 -14.69455 -14.52182 -14.45763 -14.30888 -13.78142 -13.52024 -13.33743 -13.24119 -13.09919 -12.91312 -12.78075 -12.52175 -12.37539 -12.08603 -11.94516 -11.86266 -11.72241 -11.03492 -10.82328 -10.57541 -9.55297 -9.33802 -8.91919 -8.33041 -6.37668 0.20864 1.11063 1.32680 1.36476 1.44556 1.48769 1.82672 2.11446 2.31133 2.50988 2.72481 2.96031 3.01742 3.13817 3.50306 3.59756 3.75645 3.90465 4.06158 4.11491 4.21836 4.24855 4.32840 4.43757 4.44115 4.50325 4.65224 4.73327 4.83054 4.88259 4.92312 5.02557 5.03341 5.40138 5.48275 5.62551 5.71479 5.86010 6.25746 6.64381 6.75958 7.23500 7.47800 8.83997 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.017775 B = 0.002891 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.881301 B = 9683.103692 C = 9928.792881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.229 3.771 5 C -0.533 4.533 6 H 0.028 0.972 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.237 1.237 13 C 0.498 3.502 14 O -0.573 6.573 15 C 0.057 3.943 16 N -0.553 5.553 17 C 0.057 3.943 18 C -0.064 4.064 19 S -0.226 6.226 20 C -0.112 4.112 21 H 0.136 0.864 22 C 0.484 3.516 23 F -0.172 7.172 24 F -0.178 7.178 25 F -0.172 7.172 26 C 0.065 3.935 27 H 0.044 0.956 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.018 0.982 34 H 0.267 0.733 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.132 0.868 41 H 0.113 0.887 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 -4.569 19.339 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.106 3.894 5 C -0.572 4.572 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.161 1.161 13 C 0.287 3.713 14 O -0.452 6.452 15 C -0.073 4.073 16 N -0.278 5.278 17 C -0.072 4.072 18 C -0.213 4.213 19 S 0.000 6.000 20 C -0.243 4.243 21 H 0.154 0.846 22 C 0.428 3.572 23 F -0.153 7.153 24 F -0.159 7.159 25 F -0.153 7.153 26 C -0.064 4.064 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.141 0.859 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.150 0.850 41 H 0.131 0.869 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.878 -3.318 20.115 24.114 hybrid contribution 0.300 -0.237 -1.681 1.724 sum -12.578 -3.555 18.435 22.598 Atomic orbital electron populations 1.22153 0.93992 1.03589 1.02055 1.21776 0.95545 0.81195 1.03993 1.48053 1.64340 1.15180 1.05744 1.19234 0.94514 0.92996 0.82634 1.21584 0.97175 1.31855 1.06550 0.95354 1.25846 0.96632 0.97258 0.99030 1.70052 1.17470 1.46691 1.24487 0.85732 0.80522 0.79031 0.77750 1.20245 1.20270 1.16052 1.21076 0.77296 0.86806 0.86158 1.90631 1.46632 1.20319 1.87637 1.21958 1.03436 0.95259 0.86640 1.60432 1.54459 1.10251 1.02659 1.22295 0.93205 0.90333 1.01340 1.23578 1.05790 1.00846 0.91066 1.87047 1.73196 1.24839 1.14873 1.24499 1.07303 0.97585 0.94896 0.84593 1.19542 0.74048 0.78064 0.85543 1.93226 1.79138 1.48145 1.94797 1.93218 1.81120 1.75381 1.66218 1.93216 1.37879 1.93589 1.90625 1.22207 1.00845 0.96212 0.87182 0.93634 0.88893 0.91883 0.91194 0.88429 0.93652 0.96378 0.92371 0.85935 0.88369 0.91604 0.89735 0.89888 0.85025 0.86867 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.24 71.98 0.74 -2.26 16 2 C 0.10 2.50 5.93 86.38 0.51 3.01 16 3 N -0.60 -22.18 2.46 -826.15 -2.03 -24.21 16 4 C 0.23 10.62 4.23 85.63 0.36 10.99 16 5 C -0.53 -30.64 9.94 25.60 0.25 -30.39 16 6 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.59 5.47 84.66 0.46 1.05 16 8 N -0.95 -59.47 13.96 21.45 0.30 -59.17 16 9 Si 0.95 43.74 27.47 68.60 1.88 45.63 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 13 C 0.50 17.92 7.21 87.66 0.63 18.55 16 14 O -0.57 -26.08 14.09 -3.02 -0.04 -26.12 16 15 C 0.06 1.31 4.01 85.56 0.34 1.65 16 16 N -0.55 -12.91 4.13 -902.11 -3.73 -16.64 16 17 C 0.06 1.29 4.95 86.47 0.43 1.72 16 18 C -0.06 -1.39 6.69 72.07 0.48 -0.90 16 19 S -0.23 -4.72 21.26 -56.49 -1.20 -5.92 16 20 C -0.11 -2.16 2.75 30.68 0.08 -2.08 16 21 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 22 C 0.48 9.14 2.68 71.98 0.19 9.33 16 23 F -0.17 -3.17 16.82 44.97 0.76 -2.42 16 24 F -0.18 -3.78 17.02 44.97 0.77 -3.02 16 25 F -0.17 -3.28 16.51 44.97 0.74 -2.53 16 26 C 0.06 1.13 4.47 86.47 0.39 1.52 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.03 7.22 -2.39 -0.02 1.02 16 30 H 0.07 2.02 8.07 -2.39 -0.02 2.01 16 31 H 0.10 1.89 6.44 -2.39 -0.02 1.87 16 32 H 0.05 1.96 7.13 -2.38 -0.02 1.94 16 33 H 0.02 0.91 6.85 -2.39 -0.02 0.89 16 34 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.12 2.38 7.05 -2.39 -0.02 2.36 16 36 H 0.10 1.61 7.16 -2.39 -0.02 1.59 16 37 H 0.07 1.21 7.91 -2.39 -0.02 1.19 16 38 H 0.08 2.40 5.81 -2.39 -0.01 2.39 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.13 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.11 1.64 7.38 -2.38 -0.02 1.63 16 42 H 0.08 1.17 7.61 -2.39 -0.02 1.15 16 Total: -1.00 -74.41 358.74 3.31 -71.10 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.99 Total: 11.11 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 4.88 Total: 12.18 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -5.46 Total: -100.02 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.04 Total: -26.12 kcal Atomic # 9 Polarization: -10.23 SS G_CDS: 2.26 Total: -7.97 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.63 kcal Atomic # 16 Polarization: -4.72 SS G_CDS: -1.20 Total: -5.92 kcal Total: -74.41 3.31 -71.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932081046.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.551 kcal (2) G-P(sol) polarization free energy of solvation -74.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds