Wall clock time and date at job start Tue Mar 31 2020 23:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00020 * 2 1 4 4 H 1.48498 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47183 * 300.00329 * 3 2 1 6 6 H 1.48501 * 109.46921 * 60.00225 * 3 2 1 7 7 C 1.38817 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99943 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00126 * 180.02562 * 9 7 2 11 11 H 1.09000 * 110.34527 * 32.87271 * 10 9 7 12 12 C 1.51363 * 110.30035 * 270.74511 * 10 9 7 13 13 C 1.38500 * 130.39120 * 78.26664 * 12 10 9 14 14 C 1.38106 * 120.21381 * 179.97438 * 13 12 10 15 15 C 1.38254 * 119.93600 * 359.97438 * 14 13 12 16 16 C 1.38101 * 119.93122 * 359.97438 * 15 14 13 17 17 C 1.38215 * 109.76150 * 258.25917 * 12 10 9 18 18 C 1.51370 * 109.75676 * 0.02562 * 17 12 10 19 19 C 1.54345 * 110.30511 * 154.99806 * 10 9 7 20 20 H 1.09005 * 110.99252 * 334.27546 * 19 10 9 21 21 N 1.46502 * 110.81958 * 210.80402 * 19 10 9 22 22 C 1.34781 * 119.99664 * 160.57966 * 21 19 10 23 23 O 1.21540 * 120.00334 * 359.97438 * 22 21 19 24 24 C 1.47937 * 119.99883 * 179.97438 * 22 21 19 25 25 C 1.39975 * 120.11796 * 179.97438 * 24 22 21 26 26 C 1.38416 * 117.96940 * 179.97438 * 25 24 22 27 27 C 1.39345 * 118.03945 * 359.97438 * 26 25 24 28 28 O 1.35512 * 120.03026 * 180.02562 * 27 26 25 29 29 N 1.32679 * 119.94013 * 0.27672 * 27 26 25 30 30 N 1.28357 * 122.19682 * 359.42041 * 29 27 26 31 31 H 0.96997 * 120.00158 * 359.97438 * 1 2 3 32 32 H 0.97006 * 120.00104 * 359.97438 * 9 7 2 33 33 H 1.08002 * 119.89188 * 0.02562 * 13 12 10 34 34 H 1.08000 * 120.02737 * 180.02562 * 14 13 12 35 35 H 1.07993 * 120.02834 * 179.97438 * 15 14 13 36 36 H 1.08007 * 119.88466 * 180.02562 * 16 15 14 37 37 H 1.08999 * 110.30483 * 223.88687 * 18 17 12 38 38 H 1.09003 * 110.38494 * 101.77541 * 18 17 12 39 39 H 0.97001 * 120.00219 * 340.57111 * 21 19 10 40 40 H 1.08000 * 121.01290 * 359.95738 * 25 24 22 41 41 H 1.08002 * 120.97940 * 180.02562 * 26 25 24 42 42 H 0.96700 * 114.00230 * 90.00221 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9909 -3.5559 0.5542 12 6 2.3366 -4.1024 -1.4200 13 6 3.2964 -3.6755 -2.3227 14 6 3.3630 -4.2359 -3.5832 15 6 2.4696 -5.2267 -3.9459 16 6 1.5125 -5.6543 -3.0468 17 6 1.4428 -5.0922 -1.7830 18 6 0.5020 -5.3792 -0.6324 19 6 1.1897 -4.7766 0.6113 20 1 0.4520 -4.3661 1.3009 21 7 2.0253 -5.7766 1.2807 22 6 1.4829 -6.6046 2.1954 23 8 0.3008 -6.5215 2.4653 24 6 2.3265 -7.6148 2.8711 25 6 1.7660 -8.4756 3.8218 26 6 2.5958 -9.4041 4.4261 27 6 3.9376 -9.4256 4.0509 28 8 4.7858 -10.3184 4.6165 29 7 4.3851 -8.5677 3.1431 30 7 3.6175 -7.7090 2.5766 31 1 -0.4850 0.8400 0.0004 32 1 0.3555 -2.3881 0.0002 33 1 3.9955 -2.9025 -2.0396 34 1 4.1130 -3.9011 -4.2845 35 1 2.5201 -5.6656 -4.9313 36 1 0.8152 -6.4286 -3.3308 37 1 0.3726 -6.4544 -0.5088 38 1 -0.4621 -4.8997 -0.8017 39 1 2.9688 -5.8428 1.0655 40 1 0.7180 -8.4170 4.0763 41 1 2.2143 -10.0923 5.1660 42 1 4.8444 -11.1596 4.1431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960246771.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:18 Heat of formation + Delta-G solvation = 35.009127 kcal Electronic energy + Delta-G solvation = -28400.308516 eV Core-core repulsion = 24346.799849 eV Total energy + Delta-G solvation = -4053.508667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.65465 -40.23438 -39.05675 -37.96430 -36.21427 -34.14825 -33.59768 -32.87700 -31.67901 -31.15044 -29.76148 -27.94687 -26.17564 -25.62133 -24.84783 -23.30155 -22.28138 -21.24785 -20.28903 -20.13303 -19.62477 -18.48923 -17.98723 -17.30935 -16.59401 -16.17222 -15.66094 -15.44911 -15.13435 -14.76547 -14.61042 -14.52592 -14.37207 -13.91736 -13.80584 -13.40291 -13.09681 -12.90228 -12.87917 -12.77396 -12.65273 -12.23361 -11.61770 -11.42724 -11.10253 -11.03266 -10.84739 -10.79578 -10.60051 -10.38405 -10.28002 -10.15200 -10.09740 -9.96950 -9.83931 -9.10743 -8.97734 -8.32230 -8.09080 -7.11077 -5.85333 -3.15731 -0.03587 0.28107 1.83801 1.89369 2.32024 2.78278 2.96590 3.29954 3.39922 3.45782 3.47796 3.65779 4.13123 4.22797 4.26021 4.48029 4.51832 4.56061 4.75740 5.04158 5.14497 5.32889 5.35143 5.42545 5.47944 5.50554 5.51781 5.59492 5.72922 5.89916 5.98471 6.08295 6.15013 6.21598 6.33883 6.48657 6.60104 6.69637 6.77058 6.89759 6.98104 7.22715 7.44202 7.49732 7.63485 8.02699 8.13446 8.30599 9.43097 9.93400 10.29297 11.36432 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010859 B = 0.003106 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.957069 B = 9014.014446 C =10192.509105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.007 4.007 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.703 5.703 10 C 0.208 3.792 11 H 0.067 0.933 12 C -0.093 4.093 13 C -0.089 4.089 14 C -0.127 4.127 15 C -0.131 4.131 16 C -0.114 4.114 17 C -0.097 4.097 18 C -0.085 4.085 19 C 0.133 3.867 20 H 0.112 0.888 21 N -0.687 5.687 22 C 0.576 3.424 23 O -0.526 6.526 24 C 0.020 3.980 25 C -0.047 4.047 26 C -0.141 4.141 27 C 0.271 3.729 28 O -0.472 6.472 29 N -0.254 5.254 30 N -0.180 5.180 31 H 0.257 0.743 32 H 0.388 0.612 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.412 0.588 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.076 -22.124 3.426 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.092 0.908 9 N -0.342 5.342 10 C 0.096 3.904 11 H 0.085 0.915 12 C -0.096 4.096 13 C -0.107 4.107 14 C -0.145 4.145 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.098 4.098 18 C -0.123 4.123 19 C 0.028 3.972 20 H 0.130 0.870 21 N -0.337 5.337 22 C 0.358 3.642 23 O -0.401 6.401 24 C -0.127 4.127 25 C -0.076 4.076 26 C -0.171 4.171 27 C 0.086 3.914 28 O -0.279 6.279 29 N -0.108 5.108 30 N -0.029 5.029 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.248 0.752 40 H 0.187 0.813 41 H 0.181 0.819 42 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.696 -20.928 3.243 21.930 hybrid contribution -0.599 -0.037 0.219 0.639 sum 5.097 -20.965 3.462 21.851 Atomic orbital electron populations 1.69672 1.05147 1.25860 1.56690 1.24768 0.95527 0.97786 1.02286 0.86106 0.78867 0.83897 0.77230 1.20392 1.21782 1.21742 1.19246 0.91097 0.83525 1.43590 0.90830 1.42260 1.05812 0.98768 1.87346 1.19805 0.94933 0.86255 0.89400 0.91524 1.21696 0.94168 0.94140 0.99625 1.20616 0.98342 0.98850 0.92938 1.20970 0.99613 0.97608 0.96329 1.20844 0.96585 0.98669 0.98886 1.20461 0.99137 1.00640 0.92988 1.20494 0.97362 0.97316 0.94647 1.21399 0.98151 1.01053 0.91719 1.22068 0.93657 0.87862 0.93619 0.87030 1.45793 1.14119 1.34210 1.39551 1.17390 0.86414 0.80678 0.79743 1.90832 1.14778 1.70293 1.64162 1.23018 0.93544 0.98244 0.97893 1.22450 1.02865 0.90643 0.91685 1.22580 0.92737 1.00521 1.01230 1.21059 0.87591 0.91918 0.90805 1.84741 1.64322 1.27671 1.51122 1.73111 1.29045 1.02181 1.06437 1.73312 1.02017 1.11225 1.16381 0.93339 0.77721 0.86485 0.86694 0.86820 0.87212 0.91050 0.89137 0.75216 0.81343 0.81906 0.73143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.32 13.06 55.49 0.72 -26.60 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -16.88 5.13 -53.54 -0.27 -17.16 16 10 C 0.21 3.99 3.11 -68.05 -0.21 3.78 16 11 H 0.07 1.28 7.99 -51.93 -0.42 0.87 16 12 C -0.09 -1.70 5.77 -104.21 -0.60 -2.30 16 13 C -0.09 -1.57 10.04 -39.53 -0.40 -1.97 16 14 C -0.13 -1.96 10.05 -39.62 -0.40 -2.36 16 15 C -0.13 -1.91 10.05 -39.63 -0.40 -2.31 16 16 C -0.11 -1.74 10.04 -39.54 -0.40 -2.14 16 17 C -0.10 -1.64 6.14 -104.21 -0.64 -2.28 16 18 C -0.09 -1.35 6.48 -26.84 -0.17 -1.52 16 19 C 0.13 2.23 2.94 -66.51 -0.20 2.03 16 20 H 0.11 2.07 7.64 -51.93 -0.40 1.67 16 21 N -0.69 -9.96 5.14 -53.34 -0.27 -10.23 16 22 C 0.58 8.22 7.81 -12.29 -0.10 8.13 16 23 O -0.53 -8.67 16.12 5.33 0.09 -8.58 16 24 C 0.02 0.24 6.83 -82.85 -0.57 -0.32 16 25 C -0.05 -0.42 9.72 -38.87 -0.38 -0.80 16 26 C -0.14 -0.98 10.14 -39.10 -0.40 -1.37 16 27 C 0.27 2.40 7.85 -16.77 -0.13 2.27 16 28 O -0.47 -3.12 13.56 -18.23 -0.25 -3.37 16 29 N -0.25 -3.05 11.54 30.54 0.35 -2.69 16 30 N -0.18 -2.29 10.73 33.32 0.36 -1.93 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.39 9.98 7.83 -40.82 -0.32 9.66 16 33 H 0.12 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 37 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 38 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.41 5.58 7.93 -40.82 -0.32 5.26 16 40 H 0.17 1.25 7.71 -52.49 -0.40 0.85 16 41 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 42 H 0.41 0.47 9.06 45.56 0.41 0.88 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -33.64 369.39 -7.91 -41.55 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -3.95 Total: 14.59 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -5.23 Total: -8.11 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.89 Total: -58.61 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.16 Total: -11.95 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.64 -7.91 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960246771.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.562 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds