Wall clock time and date at job start Tue Mar 31 2020 23:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99628 * 3 2 1 5 5 H 1.48497 * 109.46789 * 209.99638 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99787 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.26923 * 35.61471 * 10 9 7 12 12 C 1.51377 * 110.30176 * 273.54361 * 10 9 7 13 13 C 1.38495 * 130.39127 * 43.88290 * 12 10 9 14 14 C 1.38101 * 120.21743 * 180.02562 * 13 12 10 15 15 C 1.38262 * 119.93360 * 359.97438 * 14 13 12 16 16 C 1.38107 * 119.93116 * 359.97438 * 15 14 13 17 17 C 1.38217 * 109.75725 * 223.88731 * 12 10 9 18 18 C 1.51364 * 109.76098 * 359.97438 * 17 12 10 19 19 C 1.54347 * 105.17093 * 17.19348 * 18 17 12 20 20 H 1.09002 * 110.82472 * 91.87129 * 19 18 17 21 21 N 1.46503 * 110.82301 * 215.42517 * 19 18 17 22 22 C 1.34777 * 120.00004 * 267.96931 * 21 19 18 23 23 O 1.21582 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.47532 * 119.99602 * 179.97438 * 22 21 19 25 25 C 1.39795 * 120.98669 * 359.71990 * 24 22 21 26 26 N 1.32187 * 118.98416 * 179.69695 * 25 24 22 27 27 C 1.31933 * 121.13732 * 0.61468 * 26 25 24 28 28 N 1.31722 * 122.20066 * 359.65856 * 27 26 25 29 29 C 1.32773 * 120.87165 * 0.02562 * 28 27 26 30 30 O 1.35275 * 120.62168 * 179.97438 * 29 28 27 31 31 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 33 33 H 1.07999 * 119.89004 * 0.02562 * 13 12 10 34 34 H 1.07997 * 120.03802 * 179.97438 * 14 13 12 35 35 H 1.07997 * 120.03069 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.88863 * 180.02562 * 16 15 14 37 37 H 1.09004 * 110.30372 * 136.11016 * 18 17 12 38 38 H 1.08995 * 110.30470 * 258.16878 * 18 17 12 39 39 H 0.96998 * 119.99708 * 87.96476 * 21 19 18 40 40 H 1.08009 * 120.50547 * 359.97438 * 25 24 22 41 41 H 1.08004 * 118.89868 * 179.67651 * 27 26 25 42 42 H 0.96698 * 114.00451 * 270.02801 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 0.0059 8 1 1.4704 -2.1374 0.0100 9 7 3.3796 -1.2020 0.0064 10 6 4.1122 -2.4707 0.0120 11 1 3.5814 -3.2159 -0.5804 12 6 4.2983 -2.9634 1.4312 13 6 3.4059 -3.0102 2.4893 14 6 3.8050 -3.5089 3.7137 15 6 5.0995 -3.9637 3.8846 16 6 5.9905 -3.9188 2.8304 17 6 5.5924 -3.4180 1.6021 18 6 6.3643 -3.2624 0.3094 19 6 5.5407 -2.2675 -0.5356 20 1 5.8778 -1.2446 -0.3676 21 7 5.6074 -2.6123 -1.9579 22 6 6.5556 -2.0612 -2.7413 23 8 7.3553 -1.2774 -2.2676 24 6 6.6230 -2.4090 -4.1734 25 6 5.7176 -3.3121 -4.7381 26 7 5.8103 -3.5906 -6.0270 27 6 6.7456 -3.0414 -6.7781 28 7 7.6252 -2.1894 -6.2927 29 6 7.6049 -1.8456 -5.0105 30 8 8.5110 -0.9706 -4.5173 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0023 33 1 2.3945 -2.6556 2.3564 34 1 3.1068 -3.5437 4.5369 35 1 5.4132 -4.3544 4.8413 36 1 7.0014 -4.2746 2.9646 37 1 7.3571 -2.8585 0.5079 38 1 6.4422 -4.2216 -0.2024 39 1 4.9691 -3.2374 -2.3358 40 1 4.9512 -3.7717 -4.1315 41 1 6.7915 -3.2988 -7.8260 42 1 9.3190 -1.3858 -4.1860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960276839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:25 Heat of formation + Delta-G solvation = 30.215502 kcal Electronic energy + Delta-G solvation = -28820.119702 eV Core-core repulsion = 24766.403168 eV Total energy + Delta-G solvation = -4053.716534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.65016 -40.23527 -39.01914 -37.88976 -36.26981 -34.29676 -33.81100 -32.99567 -31.76259 -31.40227 -30.08779 -27.98944 -26.39556 -25.59280 -24.50349 -22.81300 -22.39723 -21.09027 -20.66028 -20.19611 -19.54496 -18.35310 -18.14955 -17.51677 -16.77710 -16.17811 -15.82402 -15.59858 -15.12795 -14.87595 -14.69542 -14.45821 -14.26551 -14.11344 -14.02017 -13.61003 -12.99446 -12.92469 -12.71261 -12.66622 -12.47420 -12.27036 -12.13849 -11.60660 -11.28477 -11.10995 -11.03276 -10.91792 -10.73218 -10.46770 -10.24039 -9.99913 -9.96304 -9.73358 -9.68609 -9.21106 -9.00467 -8.40766 -8.20811 -7.44128 -5.88604 -3.25965 0.04235 0.53756 1.69453 1.80035 2.63884 2.84635 3.02213 3.33541 3.37966 3.41943 3.42374 3.65284 3.92908 4.12681 4.36984 4.46502 4.50779 4.64492 4.83317 4.89396 5.06459 5.18657 5.24908 5.30726 5.37006 5.43470 5.58817 5.59788 5.73084 5.79909 5.90164 5.99001 6.09786 6.15801 6.35332 6.39307 6.49626 6.56355 6.78814 6.93653 7.09062 7.12833 7.34471 7.40797 7.57334 7.83794 8.05125 8.29008 9.05324 9.78602 9.96188 11.28555 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.003934 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.416971 B = 7115.443061 C = 8929.407108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.878 3.122 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.093 0.907 9 N -0.737 5.737 10 C 0.213 3.787 11 H 0.076 0.924 12 C -0.094 4.094 13 C -0.077 4.077 14 C -0.128 4.128 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.107 4.107 18 C -0.085 4.085 19 C 0.139 3.861 20 H 0.105 0.895 21 N -0.705 5.705 22 C 0.569 3.431 23 O -0.517 6.517 24 C -0.256 4.256 25 C 0.200 3.800 26 N -0.527 5.527 27 C 0.339 3.661 28 N -0.545 5.545 29 C 0.418 3.582 30 O -0.453 6.453 31 H 0.261 0.739 32 H 0.365 0.635 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.400 0.600 40 H 0.178 0.822 41 H 0.207 0.793 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.606 -11.473 -5.089 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.183 4.183 3 Si 0.708 3.292 4 H -0.209 1.209 5 H -0.202 1.202 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.111 0.889 9 N -0.378 5.378 10 C 0.102 3.898 11 H 0.093 0.907 12 C -0.098 4.098 13 C -0.095 4.095 14 C -0.146 4.146 15 C -0.147 4.147 16 C -0.134 4.134 17 C -0.108 4.108 18 C -0.124 4.124 19 C 0.033 3.967 20 H 0.123 0.877 21 N -0.356 5.356 22 C 0.354 3.646 23 O -0.393 6.393 24 C -0.266 4.266 25 C 0.034 3.966 26 N -0.243 5.243 27 C 0.052 3.948 28 N -0.270 5.270 29 C 0.230 3.770 30 O -0.261 6.261 31 H 0.071 0.929 32 H 0.199 0.801 33 H 0.151 0.849 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.236 0.764 40 H 0.195 0.805 41 H 0.223 0.777 42 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 15.591 -10.679 -5.822 19.774 hybrid contribution 0.450 0.973 0.917 1.411 sum 16.041 -9.706 -4.905 19.380 Atomic orbital electron populations 1.69690 1.05085 1.26055 1.56542 1.24625 0.95132 0.97133 1.01370 0.86652 0.79397 0.85133 0.78013 1.20862 1.20217 1.21634 1.18989 0.80126 0.94731 1.44147 0.88938 1.42778 1.04224 1.01249 1.89557 1.19887 0.89527 0.90010 0.90351 0.90653 1.21504 0.93427 0.96805 0.98022 1.20886 1.00689 0.96574 0.91398 1.21090 0.96116 0.99992 0.97403 1.20912 0.94016 1.01547 0.98249 1.20448 0.99190 1.01497 0.92241 1.20398 0.95657 1.00325 0.94402 1.21322 0.98759 0.99528 0.92763 1.21967 0.96432 0.99913 0.78363 0.87672 1.45758 1.33000 1.47059 1.09768 1.17539 0.81727 0.80930 0.84424 1.90828 1.40280 1.33654 1.74556 1.22072 1.03292 1.04110 0.97099 1.23561 0.93236 0.88840 0.90970 1.68443 1.22700 1.27096 1.06013 1.25088 0.83484 0.85585 1.00676 1.68149 1.28819 1.15726 1.14278 1.19482 0.88154 0.82801 0.86570 1.84667 1.30992 1.30853 1.79574 0.92884 0.80147 0.84912 0.86431 0.86672 0.87068 0.90580 0.90098 0.76369 0.80520 0.77706 0.72548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.86 13.97 55.49 0.78 -27.09 16 2 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 3 Si 0.88 21.82 27.73 -169.99 -4.71 17.10 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.25 -6.50 9.85 -15.06 -0.15 -6.65 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.74 -16.15 4.96 -53.55 -0.27 -16.41 16 10 C 0.21 3.70 3.22 -68.05 -0.22 3.49 16 11 H 0.08 1.27 7.77 -51.93 -0.40 0.87 16 12 C -0.09 -1.61 5.79 -104.20 -0.60 -2.21 16 13 C -0.08 -1.36 9.89 -39.54 -0.39 -1.76 16 14 C -0.13 -1.92 10.05 -39.62 -0.40 -2.31 16 15 C -0.13 -1.73 10.05 -39.62 -0.40 -2.13 16 16 C -0.12 -1.56 10.04 -39.53 -0.40 -1.96 16 17 C -0.11 -1.58 6.14 -104.21 -0.64 -2.22 16 18 C -0.09 -1.10 6.49 -26.85 -0.17 -1.27 16 19 C 0.14 2.06 3.12 -66.53 -0.21 1.85 16 20 H 0.11 1.82 7.21 -51.93 -0.37 1.45 16 21 N -0.70 -8.83 5.10 -53.48 -0.27 -9.11 16 22 C 0.57 7.75 7.78 -12.47 -0.10 7.65 16 23 O -0.52 -8.60 14.96 -15.85 -0.24 -8.84 16 24 C -0.26 -2.97 5.92 -104.56 -0.62 -3.59 16 25 C 0.20 1.94 10.80 -16.82 -0.18 1.76 16 26 N -0.53 -5.23 10.42 -14.29 -0.15 -5.38 16 27 C 0.34 3.06 12.27 -92.10 -1.13 1.93 16 28 N -0.54 -6.03 10.45 -14.32 -0.15 -6.18 16 29 C 0.42 5.01 7.85 -16.18 -0.13 4.88 16 30 O -0.45 -5.37 11.81 -38.66 -0.46 -5.83 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.36 8.28 5.45 -40.82 -0.22 8.05 16 33 H 0.13 2.63 7.58 -52.49 -0.40 2.23 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.89 8.08 -51.93 -0.42 0.48 16 39 H 0.40 3.99 6.56 -40.82 -0.27 3.72 16 40 H 0.18 1.23 6.53 -52.48 -0.34 0.89 16 41 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.41 2.92 9.06 45.56 0.41 3.33 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -34.57 359.84 -9.59 -44.16 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -3.72 Total: 14.38 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -5.83 Total: -2.24 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -0.06 Total: -64.17 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.69 Total: -14.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.57 -9.59 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960276839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.374 kcal (2) G-P(sol) polarization free energy of solvation -34.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds