Wall clock time and date at job start Tue Mar 31 2020 23:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99628 * 3 2 1 5 5 H 1.48497 * 109.46789 * 209.99638 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99787 * 3 2 1 7 7 C 1.38806 * 120.00103 * 179.71988 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 N 1.36935 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.46498 * 120.00239 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.26923 * 35.61471 * 10 9 7 12 12 C 1.51377 * 110.30176 * 273.54361 * 10 9 7 13 13 C 1.38495 * 130.39127 * 43.88290 * 12 10 9 14 14 C 1.38101 * 120.21743 * 180.02562 * 13 12 10 15 15 C 1.38262 * 119.93360 * 359.97438 * 14 13 12 16 16 C 1.38107 * 119.93116 * 359.97438 * 15 14 13 17 17 C 1.38217 * 109.75725 * 223.88731 * 12 10 9 18 18 C 1.51364 * 109.76098 * 359.97438 * 17 12 10 19 19 C 1.54347 * 105.17093 * 17.19348 * 18 17 12 20 20 H 1.09002 * 110.82472 * 91.87129 * 19 18 17 21 21 N 1.46503 * 110.82301 * 215.42517 * 19 18 17 22 22 C 1.34777 * 120.00004 * 267.96931 * 21 19 18 23 23 O 1.21582 * 119.99827 * 359.97438 * 22 21 19 24 24 C 1.47532 * 119.99602 * 179.97438 * 22 21 19 25 25 C 1.39795 * 120.98669 * 359.71990 * 24 22 21 26 26 N 1.32187 * 118.98416 * 179.69695 * 25 24 22 27 27 C 1.31933 * 121.13732 * 0.61468 * 26 25 24 28 28 N 1.31722 * 122.20066 * 359.65856 * 27 26 25 29 29 C 1.32773 * 120.87165 * 0.02562 * 28 27 26 30 30 O 1.35275 * 120.62168 * 179.97438 * 29 28 27 31 31 H 0.96999 * 120.00174 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00013 * 359.97438 * 9 7 2 33 33 H 1.07999 * 119.89004 * 0.02562 * 13 12 10 34 34 H 1.07997 * 120.03802 * 179.97438 * 14 13 12 35 35 H 1.07997 * 120.03069 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.88863 * 180.02562 * 16 15 14 37 37 H 1.09004 * 110.30372 * 136.11016 * 18 17 12 38 38 H 1.08995 * 110.30470 * 258.16878 * 18 17 12 39 39 H 0.96998 * 119.99708 * 87.96476 * 21 19 18 40 40 H 1.08009 * 120.50547 * 359.97438 * 25 24 22 41 41 H 1.08004 * 118.89868 * 179.67651 * 27 26 25 42 42 H 0.96698 * 114.00451 * 270.02801 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4975 2.0466 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7000 7 6 2.0103 -1.2021 0.0059 8 1 1.4704 -2.1374 0.0100 9 7 3.3796 -1.2020 0.0064 10 6 4.1122 -2.4707 0.0120 11 1 3.5814 -3.2159 -0.5804 12 6 4.2983 -2.9634 1.4312 13 6 3.4059 -3.0102 2.4893 14 6 3.8050 -3.5089 3.7137 15 6 5.0995 -3.9637 3.8846 16 6 5.9905 -3.9188 2.8304 17 6 5.5924 -3.4180 1.6021 18 6 6.3643 -3.2624 0.3094 19 6 5.5407 -2.2675 -0.5356 20 1 5.8778 -1.2446 -0.3676 21 7 5.6074 -2.6123 -1.9579 22 6 6.5556 -2.0612 -2.7413 23 8 7.3553 -1.2774 -2.2676 24 6 6.6230 -2.4090 -4.1734 25 6 5.7176 -3.3121 -4.7381 26 7 5.8103 -3.5906 -6.0270 27 6 6.7456 -3.0414 -6.7781 28 7 7.6252 -2.1894 -6.2927 29 6 7.6049 -1.8456 -5.0105 30 8 8.5110 -0.9706 -4.5173 31 1 -0.4850 0.8400 -0.0004 32 1 3.8646 -0.3620 0.0023 33 1 2.3945 -2.6556 2.3564 34 1 3.1068 -3.5437 4.5369 35 1 5.4132 -4.3544 4.8413 36 1 7.0014 -4.2746 2.9646 37 1 7.3571 -2.8585 0.5079 38 1 6.4422 -4.2216 -0.2024 39 1 4.9691 -3.2374 -2.3358 40 1 4.9512 -3.7717 -4.1315 41 1 6.7915 -3.2988 -7.8260 42 1 9.3190 -1.3858 -4.1860 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960276839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:24 Heat of formation + Delta-G solvation = 4.242019 kcal Electronic energy + Delta-G solvation = -28821.245997 eV Core-core repulsion = 24766.403168 eV Total energy + Delta-G solvation = -4054.842829 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.48369 -41.40156 -40.10354 -38.73834 -37.54837 -35.86341 -34.81390 -34.07118 -33.20001 -32.63498 -31.48912 -29.12787 -27.85493 -26.46477 -25.33827 -24.60514 -23.51310 -22.19133 -21.93251 -21.43172 -20.36959 -19.80324 -19.17196 -18.79756 -17.59270 -17.40745 -17.16748 -16.61001 -16.30686 -16.16993 -15.94007 -15.62679 -15.49118 -15.11014 -14.91807 -14.86237 -14.76726 -14.24814 -13.96639 -13.91636 -13.71146 -13.46488 -13.33216 -12.99449 -12.69592 -12.47350 -12.32544 -12.23548 -12.01285 -11.82569 -11.81551 -11.62284 -11.13575 -10.98648 -10.82954 -10.52282 -10.22064 -9.61438 -9.42464 -9.34641 -8.04759 -5.37380 -0.76403 -0.24647 0.52408 0.60193 1.33489 1.35201 1.40174 1.66610 1.86291 2.21679 2.43521 2.59502 2.92792 2.98073 3.18133 3.26293 3.37404 3.49666 3.52908 3.68234 3.94820 4.05386 4.09734 4.19507 4.29756 4.31551 4.35027 4.38804 4.66214 4.76873 4.84373 4.90859 4.95725 5.04717 5.20597 5.30444 5.37429 5.62104 5.64310 5.71430 5.73886 5.90535 6.17991 6.22692 6.34959 6.41785 6.81888 7.02643 7.03289 7.77460 7.94831 9.16040 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009293 B = 0.003934 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.416971 B = 7115.443061 C = 8929.407108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.050 4.050 3 Si 0.936 3.064 4 H -0.283 1.283 5 H -0.264 1.264 6 H -0.298 1.298 7 C -0.215 4.215 8 H 0.068 0.932 9 N -0.742 5.742 10 C 0.208 3.792 11 H 0.079 0.921 12 C -0.120 4.120 13 C -0.107 4.107 14 C -0.134 4.134 15 C -0.120 4.120 16 C -0.112 4.112 17 C -0.104 4.104 18 C -0.073 4.073 19 C 0.149 3.851 20 H 0.081 0.919 21 N -0.697 5.697 22 C 0.572 3.428 23 O -0.552 6.552 24 C -0.271 4.271 25 C 0.210 3.790 26 N -0.537 5.537 27 C 0.344 3.656 28 N -0.559 5.559 29 C 0.411 3.589 30 O -0.471 6.471 31 H 0.256 0.744 32 H 0.362 0.638 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.413 0.587 40 H 0.202 0.798 41 H 0.243 0.757 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.395 -13.284 -5.180 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.242 4.242 3 Si 0.765 3.235 4 H -0.210 1.210 5 H -0.189 1.189 6 H -0.224 1.224 7 C -0.346 4.346 8 H 0.086 0.914 9 N -0.383 5.383 10 C 0.100 3.900 11 H 0.097 0.903 12 C -0.123 4.123 13 C -0.125 4.125 14 C -0.152 4.152 15 C -0.138 4.138 16 C -0.129 4.129 17 C -0.105 4.105 18 C -0.111 4.111 19 C 0.042 3.958 20 H 0.099 0.901 21 N -0.348 5.348 22 C 0.358 3.642 23 O -0.430 6.430 24 C -0.280 4.280 25 C 0.043 3.957 26 N -0.252 5.252 27 C 0.059 3.941 28 N -0.285 5.285 29 C 0.223 3.777 30 O -0.282 6.282 31 H 0.065 0.935 32 H 0.195 0.805 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.125 0.875 39 H 0.252 0.748 40 H 0.218 0.782 41 H 0.259 0.741 42 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges 18.437 -12.552 -5.920 23.077 hybrid contribution -0.359 1.366 0.958 1.706 sum 18.078 -11.187 -4.962 21.831 Atomic orbital electron populations 1.69832 1.06674 1.26326 1.59887 1.25224 0.95745 1.00143 1.03111 0.85701 0.78529 0.81479 0.77769 1.20956 1.18892 1.22441 1.18931 0.81906 0.93391 1.40325 0.91385 1.42800 1.02817 1.03049 1.89664 1.20125 0.90643 0.87942 0.91334 0.90346 1.21351 0.94851 0.98858 0.97243 1.20766 0.99391 0.98963 0.93415 1.21289 0.97616 0.99645 0.96614 1.21326 0.92826 0.99839 0.99782 1.20876 1.00743 1.00039 0.91290 1.20619 0.94438 0.99666 0.95764 1.21273 0.98279 1.00037 0.91511 1.21677 0.94672 0.99544 0.79857 0.90062 1.45631 1.33217 1.47099 1.08901 1.17767 0.81119 0.80158 0.85108 1.90807 1.41666 1.35215 1.75319 1.21884 1.04537 1.05741 0.95874 1.23943 0.92794 0.87694 0.91221 1.68564 1.23104 1.27464 1.06031 1.25887 0.82170 0.84051 1.02011 1.68242 1.29771 1.16660 1.13812 1.19670 0.88234 0.82687 0.87093 1.84610 1.31978 1.31763 1.79806 0.93457 0.80511 0.88707 0.85007 0.83126 0.83619 0.89493 0.87518 0.74832 0.78160 0.74094 0.70684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.10 13.97 21.65 0.30 -60.80 16 2 C -0.05 -2.88 5.50 84.86 0.47 -2.42 16 3 Si 0.94 46.32 27.73 68.60 1.90 48.22 16 4 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 5 H -0.26 -12.31 6.52 99.48 0.65 -11.66 16 6 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 7 C -0.21 -11.51 9.85 84.03 0.83 -10.69 16 8 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 9 N -0.74 -33.00 4.96 -323.33 -1.60 -34.60 16 10 C 0.21 7.21 3.22 44.91 0.14 7.36 16 11 H 0.08 2.64 7.77 -2.39 -0.02 2.62 16 12 C -0.12 -4.06 5.79 -19.59 -0.11 -4.17 16 13 C -0.11 -3.85 9.89 22.30 0.22 -3.63 16 14 C -0.13 -3.84 10.05 22.24 0.22 -3.62 16 15 C -0.12 -2.78 10.05 22.24 0.22 -2.56 16 16 C -0.11 -2.56 10.04 22.30 0.22 -2.34 16 17 C -0.10 -2.80 6.14 -19.60 -0.12 -2.92 16 18 C -0.07 -1.66 6.49 30.52 0.20 -1.46 16 19 C 0.15 4.23 3.12 45.90 0.14 4.37 16 20 H 0.08 2.77 7.21 -2.39 -0.02 2.75 16 21 N -0.70 -16.40 5.10 -441.39 -2.25 -18.65 16 22 C 0.57 14.91 7.78 86.69 0.67 15.58 16 23 O -0.55 -18.00 14.96 16.24 0.24 -17.76 16 24 C -0.27 -5.91 5.92 -19.83 -0.12 -6.02 16 25 C 0.21 3.62 10.80 85.02 0.92 4.54 16 26 N -0.54 -9.35 10.42 -199.13 -2.07 -11.42 16 27 C 0.34 5.38 12.27 180.86 2.22 7.60 16 28 N -0.56 -11.46 10.45 -312.04 -3.26 -14.72 16 29 C 0.41 9.41 7.85 85.17 0.67 10.08 16 30 O -0.47 -10.93 11.81 -65.38 -0.77 -11.71 16 31 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 32 H 0.36 16.49 5.45 -92.71 -0.50 15.98 16 33 H 0.09 4.05 7.58 -2.91 -0.02 4.03 16 34 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 2.40 8.06 -2.91 -0.02 2.37 16 37 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.11 1.93 8.08 -2.39 -0.02 1.91 16 39 H 0.41 7.45 6.56 -92.71 -0.61 6.84 16 40 H 0.20 2.26 6.53 -2.91 -0.02 2.25 16 41 H 0.24 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.43 5.89 9.06 -74.06 -0.67 5.22 16 Total: -1.00 -77.62 359.84 -1.44 -79.06 By element: Atomic # 1 Polarization: 33.40 SS G_CDS: -0.72 Total: 32.67 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.80 Total: 9.70 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -8.89 Total: -140.19 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.53 Total: -29.46 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -77.62 -1.44 -79.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960276839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.301 kcal (2) G-P(sol) polarization free energy of solvation -77.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds