Wall clock time and date at job start Tue Mar 31 2020 23:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00017 * 2 1 4 4 H 1.48499 * 109.47110 * 239.99642 * 3 2 1 5 5 H 1.48498 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47114 * 119.99905 * 3 2 1 7 7 C 1.38811 * 119.99593 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99725 * 189.09696 * 7 2 1 9 9 N 1.36935 * 120.00281 * 9.10094 * 7 2 1 10 10 C 1.48141 * 127.83654 * 15.57271 * 9 7 2 11 11 C 1.54390 * 104.61745 * 140.40974 * 10 9 7 12 12 H 1.09001 * 118.18092 * 244.19714 * 11 10 9 13 13 C 1.54139 * 104.96447 * 23.83026 * 11 10 9 14 14 H 1.09004 * 121.79242 * 222.19770 * 13 11 10 15 15 C 1.48007 * 127.84138 * 195.50567 * 9 7 2 16 16 C 1.52997 * 59.75457 * 114.13861 * 13 11 10 17 17 H 1.09003 * 117.44275 * 252.37738 * 16 13 11 18 18 N 1.46494 * 117.44488 * 107.62561 * 16 13 11 19 19 C 1.34783 * 120.00030 * 154.83688 * 18 16 13 20 20 O 1.21555 * 119.99634 * 359.97438 * 19 18 16 21 21 C 1.47812 * 119.99827 * 180.02562 * 19 18 16 22 22 C 1.39660 * 120.02574 * 179.97438 * 21 19 18 23 23 C 1.37729 * 119.97763 * 180.02562 * 22 21 19 24 24 C 1.39441 * 120.02494 * 0.02562 * 23 22 21 25 25 C 1.48395 * 119.97402 * 179.97438 * 24 23 22 26 26 N 1.35227 * 126.41446 * 180.02562 * 25 24 23 27 27 C 1.30969 * 105.57815 * 179.97438 * 26 25 24 28 28 O 1.33672 * 107.12741 * 359.97438 * 27 26 25 29 29 N 1.21290 * 110.02262 * 359.97438 * 28 27 26 30 30 C 1.39436 * 120.04824 * 0.25995 * 24 23 22 31 31 C 1.37735 * 120.02612 * 359.44439 * 30 24 23 32 32 H 0.97004 * 119.99369 * 0.02562 * 1 2 3 33 33 H 1.08998 * 110.41170 * 21.62753 * 10 9 7 34 34 H 1.08997 * 110.40780 * 259.19342 * 10 9 7 35 35 H 1.08996 * 110.41431 * 100.79096 * 15 9 7 36 36 H 1.09002 * 110.37017 * 338.38148 * 15 9 7 37 37 H 0.97002 * 120.00422 * 334.83554 * 18 16 13 38 38 H 1.08006 * 120.00749 * 359.97438 * 22 21 19 39 39 H 1.07996 * 119.99038 * 180.02562 * 23 22 21 40 40 H 1.08009 * 126.43558 * 180.02562 * 27 26 25 41 41 H 1.07998 * 119.98630 * 179.70075 * 30 24 23 42 42 H 1.08009 * 120.00932 * 180.29754 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0800 -1.2080 0.1484 9 7 1.3385 -2.3807 -0.1865 10 6 -0.0342 -2.5710 -0.7102 11 6 0.0638 -3.8172 -1.6163 12 1 -0.1233 -3.6940 -2.6830 13 6 1.2854 -4.5965 -1.0906 14 1 2.0087 -5.0539 -1.7658 15 6 1.8195 -3.7534 0.0873 16 6 -0.1184 -5.1932 -0.9724 17 1 -0.5676 -5.2278 0.0202 18 7 -0.4527 -6.3130 -1.8558 19 6 -1.4090 -7.1923 -1.4968 20 8 -1.9938 -7.0563 -0.4399 21 6 -1.7458 -8.3225 -2.3879 22 6 -2.7363 -9.2343 -2.0162 23 6 -3.0490 -10.2873 -2.8470 24 6 -2.3767 -10.4437 -4.0586 25 6 -2.7141 -11.5790 -4.9526 26 7 -2.1479 -11.8541 -6.1494 27 6 -2.7463 -12.9361 -6.5813 28 8 -3.6438 -13.2860 -5.6546 29 7 -3.6132 -12.5019 -4.7298 30 6 -1.3835 -9.5374 -4.4280 31 6 -1.0733 -8.4801 -3.6015 32 1 -0.4849 0.8401 -0.0004 33 1 -0.3433 -1.7021 -1.2912 34 1 -0.7317 -2.7499 0.1080 35 1 1.4126 -4.1177 1.0306 36 1 2.9090 -3.7765 0.1082 37 1 0.0142 -6.4217 -2.6990 38 1 -3.2563 -9.1141 -1.0772 39 1 -3.8152 -10.9923 -2.5601 40 1 -2.5508 -13.4496 -7.5112 41 1 -0.8600 -9.6622 -5.3643 42 1 -0.3073 -7.7755 -3.8901 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962328691.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:47 Heat of formation + Delta-G solvation = 132.960215 kcal Electronic energy + Delta-G solvation = -27063.995451 eV Core-core repulsion = 23014.734262 eV Total energy + Delta-G solvation = -4049.261189 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.10722 -40.47466 -39.15710 -38.11864 -36.28242 -34.61327 -33.47122 -32.73368 -31.46319 -31.20585 -30.07822 -27.16449 -26.17427 -25.33666 -24.81067 -23.11432 -22.58061 -21.72087 -20.61455 -20.27098 -19.30548 -18.94546 -18.60250 -17.91525 -16.90157 -16.73423 -16.29213 -15.90420 -15.34778 -14.94511 -14.84941 -14.66530 -14.13126 -13.95458 -13.63931 -13.48875 -13.24682 -13.18405 -12.77733 -12.51799 -12.30901 -12.22697 -11.82127 -11.59925 -11.49403 -11.41490 -11.02266 -11.00296 -10.82187 -10.44264 -10.23418 -10.21398 -10.00527 -9.74221 -9.47744 -9.21746 -9.17095 -8.75459 -8.36725 -6.88198 -5.80250 -3.14995 -0.03645 0.78340 0.92600 1.78479 2.45281 2.73664 2.96335 3.00898 3.38688 3.43027 3.44420 3.49152 3.52078 4.28234 4.33286 4.41913 4.46560 4.49742 4.55572 4.84093 4.96973 5.08773 5.10498 5.21082 5.34148 5.35261 5.37283 5.54465 5.57476 5.79947 5.82424 5.86166 5.88295 5.93187 6.10424 6.20906 6.32069 6.49465 6.66560 6.75861 6.86540 7.34796 7.47048 7.52872 7.58295 7.70652 8.14744 8.19799 9.09898 9.72794 10.49439 11.33950 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035159 B = 0.001680 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.182931 B =16661.880782 C =16954.345245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.593 5.593 10 C 0.185 3.815 11 C -0.180 4.180 12 H 0.102 0.898 13 C -0.182 4.182 14 H 0.104 0.896 15 C 0.156 3.844 16 C 0.095 3.905 17 H 0.134 0.866 18 N -0.690 5.690 19 C 0.557 3.443 20 O -0.529 6.529 21 C -0.106 4.106 22 C -0.061 4.061 23 C -0.090 4.090 24 C -0.008 4.008 25 C 0.211 3.789 26 N -0.478 5.478 27 C 0.165 3.835 28 O 0.083 5.917 29 N -0.371 5.371 30 C -0.081 4.081 31 C -0.090 4.090 32 H 0.255 0.745 33 H 0.091 0.909 34 H 0.027 0.973 35 H 0.028 0.972 36 H 0.052 0.948 37 H 0.398 0.602 38 H 0.147 0.853 39 H 0.138 0.862 40 H 0.266 0.734 41 H 0.142 0.858 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.973 -27.103 -14.820 31.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.357 4.357 8 H 0.094 0.906 9 N -0.316 5.316 10 C 0.059 3.941 11 C -0.201 4.201 12 H 0.120 0.880 13 C -0.203 4.203 14 H 0.122 0.878 15 C 0.030 3.970 16 C -0.010 4.010 17 H 0.151 0.849 18 N -0.339 5.339 19 C 0.343 3.657 20 O -0.406 6.406 21 C -0.110 4.110 22 C -0.080 4.080 23 C -0.110 4.110 24 C -0.010 4.010 25 C -0.059 4.059 26 N -0.210 5.210 27 C -0.076 4.076 28 O 0.021 5.979 29 N -0.075 5.075 30 C -0.101 4.101 31 C -0.108 4.108 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.233 0.767 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.282 0.718 41 H 0.160 0.840 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.626 -26.395 -13.313 30.093 hybrid contribution 0.775 0.514 -1.022 1.381 sum -4.851 -25.881 -14.335 29.981 Atomic orbital electron populations 1.69895 1.05057 1.25602 1.55473 1.24911 0.95650 0.98011 1.01651 0.86180 0.78533 0.82909 0.78000 1.21099 1.21532 1.20948 1.18939 0.90793 0.82284 1.43716 0.90554 1.45134 1.13322 0.99966 1.73162 1.21059 0.86925 0.92447 0.93691 1.24731 1.02003 0.92832 1.00566 0.87958 1.24322 0.90166 1.02444 1.03381 0.87834 1.21085 0.97232 0.85868 0.92863 1.21892 0.98794 0.84802 0.95544 0.84864 1.45301 1.38497 1.27018 1.23073 1.18152 0.79788 0.81803 0.85917 1.90800 1.51463 1.74521 1.23799 1.20221 0.98616 0.96744 0.95442 1.21232 0.95073 0.91920 0.99789 1.21140 0.99257 0.98088 0.92467 1.17505 0.98521 0.92026 0.92917 1.23994 0.92724 0.97000 0.92159 1.71989 1.26087 1.13934 1.09016 1.30505 0.86836 0.92503 0.97726 1.85319 1.48066 1.42193 1.22277 1.74937 1.20532 1.03319 1.08757 1.21092 0.95862 0.92994 1.00113 1.21289 0.98981 0.97561 0.92990 0.93442 0.89060 0.95505 0.95465 0.92924 0.76667 0.83542 0.84449 0.71825 0.84039 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.80 10.86 55.49 0.60 -26.19 16 2 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.84 29.56 -169.99 -5.03 16.82 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.35 10.35 -15.06 -0.16 -6.51 16 8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16 9 N -0.59 -15.12 3.38 -168.98 -0.57 -15.69 16 10 C 0.18 4.46 5.70 -2.41 -0.01 4.44 16 11 C -0.18 -3.38 7.05 -89.30 -0.63 -4.01 16 12 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 13 C -0.18 -3.14 7.05 -89.30 -0.63 -3.77 16 14 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.25 7.03 -2.49 -0.02 3.24 16 16 C 0.10 1.59 5.98 -67.93 -0.41 1.18 16 17 H 0.13 2.53 7.40 -51.93 -0.38 2.14 16 18 N -0.69 -9.17 5.51 -54.76 -0.30 -9.47 16 19 C 0.56 7.93 7.77 -12.34 -0.10 7.84 16 20 O -0.53 -9.55 15.90 5.32 0.08 -9.47 16 21 C -0.11 -1.19 5.88 -104.93 -0.62 -1.80 16 22 C -0.06 -0.65 9.58 -39.24 -0.38 -1.02 16 23 C -0.09 -0.85 9.67 -39.32 -0.38 -1.23 16 24 C -0.01 -0.07 5.88 -104.82 -0.62 -0.69 16 25 C 0.21 1.98 7.79 -156.12 -1.22 0.76 16 26 N -0.48 -3.69 11.25 -13.74 -0.15 -3.85 16 27 C 0.17 0.63 13.39 52.05 0.70 1.32 16 28 O 0.08 0.52 11.29 18.03 0.20 0.73 16 29 N -0.37 -3.41 11.84 30.95 0.37 -3.04 16 30 C -0.08 -0.69 9.68 -39.32 -0.38 -1.07 16 31 C -0.09 -0.78 9.53 -39.24 -0.37 -1.16 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 34 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.40 4.02 6.85 -40.82 -0.28 3.74 16 38 H 0.15 1.53 7.64 -52.48 -0.40 1.13 16 39 H 0.14 1.16 7.86 -52.49 -0.41 0.74 16 40 H 0.27 -0.62 8.06 -52.48 -0.42 -1.04 16 41 H 0.14 1.03 7.86 -52.49 -0.41 0.62 16 42 H 0.14 0.87 6.39 -52.48 -0.34 0.53 16 LS Contribution 364.08 15.07 5.49 5.49 Total: -1.00 -35.22 364.08 -9.26 -44.48 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.65 Total: 2.90 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -5.31 Total: -2.71 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.06 Total: -58.24 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.29 Total: -8.74 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.22 -9.26 -44.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962328691.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.445 kcal (2) G-P(sol) polarization free energy of solvation -35.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds