Wall clock time and date at job start Tue Mar 31 2020 23:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99463 * 2 1 4 4 H 1.48506 * 109.47339 * 239.99637 * 3 2 1 5 5 H 1.48501 * 109.47500 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00108 * 3 2 1 7 7 C 1.38806 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99539 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00670 * 0.02562 * 7 2 1 10 10 C 1.47874 * 126.93819 * 0.02562 * 9 7 2 11 11 C 1.55482 * 105.16974 * 181.92146 * 10 9 7 12 12 H 1.08999 * 116.04006 * 159.74733 * 11 10 9 13 13 C 1.57438 * 99.68542 * 32.85593 * 11 10 9 14 14 C 1.49288 * 126.95182 * 179.97438 * 9 7 2 15 15 H 1.08996 * 116.14771 * 15.84290 * 14 9 7 16 16 C 1.56019 * 104.09082 * 246.70155 * 14 9 7 17 17 N 1.47868 * 105.10236 * 288.76181 * 16 14 9 18 18 C 1.34782 * 126.93909 * 181.98266 * 17 16 14 19 19 O 1.21591 * 119.99557 * 180.02562 * 18 17 16 20 20 C 1.47604 * 120.00308 * 0.02767 * 18 17 16 21 21 N 1.32563 * 120.89838 * 359.71481 * 20 18 17 22 22 N 1.28013 * 123.10315 * 180.27332 * 21 20 18 23 23 C 1.32278 * 124.12431 * 0.02562 * 22 21 20 24 24 O 1.35280 * 120.22657 * 180.02562 * 23 22 21 25 25 C 1.41106 * 119.54559 * 359.97438 * 23 22 21 26 26 C 1.39968 * 122.88524 * 180.02562 * 25 23 22 27 27 C 1.36388 * 119.36185 * 180.02562 * 26 25 23 28 28 C 1.39266 * 121.07959 * 359.95861 * 27 26 25 29 29 C 1.36481 * 121.01603 * 0.02562 * 28 27 26 30 30 C 1.39631 * 119.34725 * 359.97438 * 29 28 27 31 31 H 0.96993 * 120.00540 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.31274 * 300.90155 * 10 9 7 33 33 H 1.09000 * 110.32009 * 62.99294 * 10 9 7 34 34 H 1.09006 * 112.53344 * 191.71147 * 13 11 10 35 35 H 1.08997 * 112.31676 * 64.17720 * 13 11 10 36 36 H 1.09005 * 110.31214 * 169.85959 * 16 14 9 37 37 H 1.08997 * 110.40588 * 47.71732 * 16 14 9 38 38 H 0.96701 * 114.00172 * 269.97386 * 24 23 22 39 39 H 1.08004 * 120.31603 * 0.02562 * 26 25 23 40 40 H 1.07998 * 119.45791 * 179.97438 * 27 26 25 41 41 H 1.07996 * 119.48959 * 179.97438 * 28 27 26 42 42 H 1.08004 * 120.32388 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3646 -4.1049 0.0503 12 1 -1.3440 -4.4355 0.3959 13 6 0.8837 -4.5247 0.9130 14 6 1.9105 -3.7617 0.0005 15 1 2.9647 -3.8350 0.2676 16 6 1.5085 -4.3456 -1.3893 17 7 0.0518 -4.5835 -1.3005 18 6 -0.7408 -5.1189 -2.2501 19 8 -1.9307 -5.2575 -2.0416 20 6 -0.1644 -5.5371 -3.5430 21 7 1.1293 -5.3892 -3.7913 22 7 1.6724 -5.7322 -4.8987 23 6 1.0142 -6.2678 -5.9134 24 8 1.6686 -6.6016 -7.0494 25 6 -0.3749 -6.4895 -5.8025 26 6 -1.1393 -7.0518 -6.8314 27 6 -2.4783 -7.2336 -6.6469 28 6 -3.0954 -6.8700 -5.4526 29 6 -2.3787 -6.3197 -4.4298 30 6 -1.0056 -6.1200 -4.5862 31 1 -0.4850 0.8399 0.0004 32 1 -0.5819 -2.0911 0.8761 33 1 -0.5732 -2.1523 -0.9117 34 1 1.0489 -5.6022 0.9119 35 1 0.8440 -4.1183 1.9236 36 1 2.0346 -5.2826 -1.5726 37 1 1.7274 -3.6285 -2.1805 38 1 1.7045 -5.8923 -7.7056 39 1 -0.6732 -7.3388 -7.7624 40 1 -3.0697 -7.6670 -7.4399 41 1 -4.1576 -7.0251 -5.3343 42 1 -2.8688 -6.0414 -3.5084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032745873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:03 Heat of formation + Delta-G solvation = 80.742497 kcal Electronic energy + Delta-G solvation = -29544.254259 eV Core-core repulsion = 25492.728740 eV Total energy + Delta-G solvation = -4051.525520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55862 -40.02458 -38.45339 -38.08981 -37.54835 -33.69469 -32.55248 -31.82338 -31.69223 -30.34816 -28.94264 -28.52794 -25.80872 -25.12969 -24.45324 -23.60816 -22.81585 -21.08436 -19.98400 -19.50239 -19.04566 -18.59705 -17.91010 -17.15485 -16.41104 -16.15570 -15.94669 -15.45001 -14.96777 -14.82586 -14.77152 -14.15042 -14.01319 -13.82553 -13.40993 -13.10155 -12.83800 -12.61815 -12.50418 -12.33672 -11.93714 -11.75764 -11.67590 -11.54314 -11.27109 -11.02509 -10.85220 -10.70088 -10.59659 -10.43170 -10.24727 -10.07394 -9.69677 -9.61952 -9.58075 -9.49970 -8.69258 -8.66848 -8.07180 -6.89718 -5.74454 -3.08160 -0.27447 0.38030 1.32484 2.40107 2.97365 3.07680 3.16041 3.40216 3.44647 3.45775 3.75352 3.87432 4.16689 4.28530 4.45085 4.46931 4.63204 4.79096 4.94228 5.02510 5.16074 5.24253 5.34886 5.35741 5.41681 5.59382 5.66565 5.68733 5.75885 5.85503 6.05272 6.10537 6.13345 6.24825 6.33794 6.42899 6.47236 6.53617 6.64586 6.78214 6.99215 7.42066 7.46164 7.72230 7.91426 8.12100 8.27154 8.60223 9.12818 9.73754 10.42546 11.38033 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003319 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.397783 B = 8433.755561 C = 8926.949758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.229 4.229 8 H 0.081 0.919 9 N -0.598 5.598 10 C 0.174 3.826 11 C 0.097 3.903 12 H 0.118 0.882 13 C -0.150 4.150 14 C 0.137 3.863 15 H 0.109 0.891 16 C 0.094 3.906 17 N -0.576 5.576 18 C 0.587 3.413 19 O -0.546 6.546 20 C 0.070 3.930 21 N -0.190 5.190 22 N -0.286 5.286 23 C 0.315 3.685 24 O -0.469 6.469 25 C -0.105 4.105 26 C -0.088 4.088 27 C -0.102 4.102 28 C -0.099 4.099 29 C -0.086 4.086 30 C -0.033 4.033 31 H 0.254 0.746 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.409 0.591 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -15.681 -12.092 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.356 4.356 8 H 0.099 0.901 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.005 4.005 12 H 0.136 0.864 13 C -0.189 4.189 14 C 0.028 3.972 15 H 0.127 0.873 16 C -0.031 4.031 17 N -0.306 5.306 18 C 0.372 3.628 19 O -0.425 6.425 20 C -0.090 4.090 21 N -0.028 5.028 22 N -0.129 5.129 23 C 0.118 3.882 24 O -0.275 6.275 25 C -0.113 4.113 26 C -0.108 4.108 27 C -0.121 4.121 28 C -0.118 4.118 29 C -0.105 4.105 30 C -0.041 4.041 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.269 0.731 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.686 -15.486 -11.255 19.332 hybrid contribution -0.857 0.871 -1.197 1.711 sum -3.542 -14.615 -12.453 19.525 Atomic orbital electron populations 1.69892 1.04928 1.25362 1.56699 1.24799 0.95684 0.97672 1.02145 0.86193 0.78434 0.83163 0.77907 1.21184 1.21683 1.21104 1.19023 0.90444 0.82058 1.44120 0.90122 1.45243 1.01221 0.99419 1.86316 1.21834 0.85000 0.86781 1.01506 1.24477 0.98154 0.97950 0.79880 0.86439 1.24224 0.96413 0.99093 0.99214 1.23303 0.96681 0.86104 0.91070 0.87332 1.23465 0.78246 1.00102 1.01260 1.49138 1.10450 1.56153 1.14847 1.16787 0.85358 0.78933 0.81687 1.90618 1.14260 1.58148 1.79447 1.24325 0.91813 0.97208 0.95658 1.73202 1.09253 1.10048 1.10282 1.72455 1.32304 1.10947 0.97158 1.21083 0.86806 0.91216 0.89118 1.84611 1.77063 1.41280 1.24591 1.18990 0.93653 1.02758 0.95883 1.20855 0.93960 0.97903 0.98115 1.21144 0.94725 0.98427 0.97822 1.21291 1.00937 0.96769 0.92832 1.21905 0.91904 0.95254 1.01460 1.19522 0.95361 0.97570 0.91645 0.93600 0.92251 0.93462 0.91465 0.89523 0.91683 0.90077 0.73139 0.84119 0.84910 0.84664 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.84 10.56 55.49 0.59 -26.25 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.23 -6.13 10.37 -15.06 -0.16 -6.29 16 8 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.60 -14.50 3.02 -156.65 -0.47 -14.97 16 10 C 0.17 4.14 4.75 -1.97 -0.01 4.13 16 11 C 0.10 1.86 5.22 -62.67 -0.33 1.53 16 12 H 0.12 2.10 8.05 -51.93 -0.42 1.68 16 13 C -0.15 -2.53 6.83 -22.07 -0.15 -2.68 16 14 C 0.14 2.62 5.53 -62.52 -0.35 2.28 16 15 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 16 C 0.09 1.76 4.82 -1.68 -0.01 1.75 16 17 N -0.58 -11.02 2.95 -158.10 -0.47 -11.49 16 18 C 0.59 11.08 7.88 -12.44 -0.10 10.98 16 19 O -0.55 -10.64 14.09 5.29 0.07 -10.57 16 20 C 0.07 1.21 7.02 -80.56 -0.57 0.64 16 21 N -0.19 -3.35 8.34 34.49 0.29 -3.07 16 22 N -0.29 -4.66 11.40 30.80 0.35 -4.31 16 23 C 0.31 4.13 7.90 -16.27 -0.13 4.00 16 24 O -0.47 -4.51 12.94 -17.53 -0.23 -4.74 16 25 C -0.11 -1.32 5.76 -106.76 -0.61 -1.93 16 26 C -0.09 -0.80 9.63 -39.60 -0.38 -1.19 16 27 C -0.10 -0.82 9.95 -39.87 -0.40 -1.21 16 28 C -0.10 -0.93 9.96 -39.83 -0.40 -1.33 16 29 C -0.09 -1.12 9.33 -39.70 -0.37 -1.49 16 30 C -0.03 -0.49 5.90 -104.81 -0.62 -1.11 16 31 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.06 1.54 7.46 -51.93 -0.39 1.15 16 33 H 0.05 1.30 7.67 -51.93 -0.40 0.90 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.06 1.11 7.53 -51.93 -0.39 0.72 16 37 H 0.08 1.73 7.73 -51.93 -0.40 1.33 16 38 H 0.41 1.79 9.06 45.56 0.41 2.20 16 39 H 0.14 0.90 7.75 -52.48 -0.41 0.49 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 41 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.17 2.48 5.28 -52.48 -0.28 2.20 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -33.59 347.72 -8.24 -41.83 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -3.93 Total: 3.64 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -4.66 Total: 7.81 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.29 Total: -60.09 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.15 Total: -15.31 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.59 -8.24 -41.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032745873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.577 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds