Wall clock time and date at job start Tue Mar 31 2020 23:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 119.99463 * 2 1 4 4 H 1.48506 * 109.47339 * 239.99637 * 3 2 1 5 5 H 1.48501 * 109.47500 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47294 * 120.00108 * 3 2 1 7 7 C 1.38806 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99539 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00670 * 0.02562 * 7 2 1 10 10 C 1.47874 * 126.93819 * 0.02562 * 9 7 2 11 11 C 1.55482 * 105.16974 * 181.92146 * 10 9 7 12 12 H 1.08999 * 116.04006 * 159.74733 * 11 10 9 13 13 C 1.57438 * 99.68542 * 32.85593 * 11 10 9 14 14 C 1.49288 * 126.95182 * 179.97438 * 9 7 2 15 15 H 1.08996 * 116.14771 * 15.84290 * 14 9 7 16 16 C 1.56019 * 104.09082 * 246.70155 * 14 9 7 17 17 N 1.47868 * 105.10236 * 288.76181 * 16 14 9 18 18 C 1.34782 * 126.93909 * 181.98266 * 17 16 14 19 19 O 1.21591 * 119.99557 * 180.02562 * 18 17 16 20 20 C 1.47604 * 120.00308 * 0.02767 * 18 17 16 21 21 N 1.32563 * 120.89838 * 359.71481 * 20 18 17 22 22 N 1.28013 * 123.10315 * 180.27332 * 21 20 18 23 23 C 1.32278 * 124.12431 * 0.02562 * 22 21 20 24 24 O 1.35280 * 120.22657 * 180.02562 * 23 22 21 25 25 C 1.41106 * 119.54559 * 359.97438 * 23 22 21 26 26 C 1.39968 * 122.88524 * 180.02562 * 25 23 22 27 27 C 1.36388 * 119.36185 * 180.02562 * 26 25 23 28 28 C 1.39266 * 121.07959 * 359.95861 * 27 26 25 29 29 C 1.36481 * 121.01603 * 0.02562 * 28 27 26 30 30 C 1.39631 * 119.34725 * 359.97438 * 29 28 27 31 31 H 0.96993 * 120.00540 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.31274 * 300.90155 * 10 9 7 33 33 H 1.09000 * 110.32009 * 62.99294 * 10 9 7 34 34 H 1.09006 * 112.53344 * 191.71147 * 13 11 10 35 35 H 1.08997 * 112.31676 * 64.17720 * 13 11 10 36 36 H 1.09005 * 110.31214 * 169.85959 * 16 14 9 37 37 H 1.08997 * 110.40588 * 47.71732 * 16 14 9 38 38 H 0.96701 * 114.00172 * 269.97386 * 24 23 22 39 39 H 1.08004 * 120.31603 * 0.02562 * 26 25 23 40 40 H 1.07998 * 119.45791 * 179.97438 * 27 26 25 41 41 H 1.07996 * 119.48959 * 179.97438 * 28 27 26 42 42 H 1.08004 * 120.32388 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3258 -2.3880 0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3646 -4.1049 0.0503 12 1 -1.3440 -4.4355 0.3959 13 6 0.8837 -4.5247 0.9130 14 6 1.9105 -3.7617 0.0005 15 1 2.9647 -3.8350 0.2676 16 6 1.5085 -4.3456 -1.3893 17 7 0.0518 -4.5835 -1.3005 18 6 -0.7408 -5.1189 -2.2501 19 8 -1.9307 -5.2575 -2.0416 20 6 -0.1644 -5.5371 -3.5430 21 7 1.1293 -5.3892 -3.7913 22 7 1.6724 -5.7322 -4.8987 23 6 1.0142 -6.2678 -5.9134 24 8 1.6686 -6.6016 -7.0494 25 6 -0.3749 -6.4895 -5.8025 26 6 -1.1393 -7.0518 -6.8314 27 6 -2.4783 -7.2336 -6.6469 28 6 -3.0954 -6.8700 -5.4526 29 6 -2.3787 -6.3197 -4.4298 30 6 -1.0056 -6.1200 -4.5862 31 1 -0.4850 0.8399 0.0004 32 1 -0.5819 -2.0911 0.8761 33 1 -0.5732 -2.1523 -0.9117 34 1 1.0489 -5.6022 0.9119 35 1 0.8440 -4.1183 1.9236 36 1 2.0346 -5.2826 -1.5726 37 1 1.7274 -3.6285 -2.1805 38 1 1.7045 -5.8923 -7.7056 39 1 -0.6732 -7.3388 -7.7624 40 1 -3.0697 -7.6670 -7.4399 41 1 -4.1576 -7.0251 -5.3343 42 1 -2.8688 -6.0414 -3.5084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032745873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:02 Heat of formation + Delta-G solvation = 55.012527 kcal Electronic energy + Delta-G solvation = -29545.369994 eV Core-core repulsion = 25492.728740 eV Total energy + Delta-G solvation = -4052.641255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61244 -41.52068 -39.62947 -39.15095 -38.63593 -35.52017 -33.78781 -33.16799 -32.70958 -31.53736 -30.55199 -30.26098 -27.06070 -26.85119 -25.42408 -25.13410 -23.92674 -22.48109 -21.52222 -20.67650 -20.28300 -19.88077 -19.09090 -18.49762 -17.84030 -17.48394 -17.21031 -16.92220 -16.40666 -15.87852 -15.77464 -15.72605 -15.18302 -15.14162 -14.88960 -14.62201 -13.93888 -13.75207 -13.66624 -13.49334 -13.37879 -13.17471 -13.13208 -12.91206 -12.74812 -12.69392 -12.56804 -12.30766 -12.18774 -12.08665 -11.86370 -11.53721 -11.44574 -11.02200 -10.70520 -10.60860 -10.47107 -9.73551 -9.53659 -8.90203 -7.84202 -5.19306 -1.28750 -0.54967 0.42417 1.28622 1.46306 1.49529 1.55274 1.62644 1.99133 2.14225 2.48954 2.71799 2.73335 3.09329 3.32551 3.39928 3.41805 3.55667 3.68068 3.73393 3.87511 4.00401 4.07816 4.16310 4.19984 4.22116 4.46653 4.59387 4.60560 4.67246 4.84380 4.90574 4.98103 5.01150 5.06510 5.12260 5.24198 5.26958 5.33644 5.43847 5.50179 5.64572 5.68818 6.10377 6.35230 6.42345 6.82513 7.03882 7.47496 7.70832 8.41406 9.27036 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014943 B = 0.003319 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.397783 B = 8433.755561 C = 8926.949758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.272 1.272 7 C -0.232 4.232 8 H 0.092 0.908 9 N -0.617 5.617 10 C 0.187 3.813 11 C 0.104 3.896 12 H 0.130 0.870 13 C -0.125 4.125 14 C 0.131 3.869 15 H 0.134 0.866 16 C 0.111 3.889 17 N -0.585 5.585 18 C 0.584 3.416 19 O -0.559 6.559 20 C 0.038 3.962 21 N -0.207 5.207 22 N -0.329 5.329 23 C 0.338 3.662 24 O -0.463 6.463 25 C -0.121 4.121 26 C -0.075 4.075 27 C -0.091 4.091 28 C -0.076 4.076 29 C -0.120 4.120 30 C -0.051 4.051 31 H 0.244 0.756 32 H 0.028 0.972 33 H -0.005 1.005 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.434 0.566 39 H 0.177 0.823 40 H 0.180 0.820 41 H 0.167 0.833 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -18.423 -14.541 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.361 4.361 8 H 0.110 0.890 9 N -0.341 5.341 10 C 0.061 3.939 11 C 0.002 3.998 12 H 0.147 0.853 13 C -0.164 4.164 14 C 0.024 3.976 15 H 0.151 0.849 16 C -0.014 4.014 17 N -0.315 5.315 18 C 0.371 3.629 19 O -0.439 6.439 20 C -0.122 4.122 21 N -0.045 5.045 22 N -0.172 5.172 23 C 0.142 3.858 24 O -0.273 6.273 25 C -0.129 4.129 26 C -0.094 4.094 27 C -0.109 4.109 28 C -0.095 4.095 29 C -0.139 4.139 30 C -0.058 4.058 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.014 0.986 34 H 0.120 0.880 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.299 0.701 39 H 0.194 0.806 40 H 0.198 0.802 41 H 0.184 0.816 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.413 -18.263 -13.737 22.980 hybrid contribution -1.005 1.581 -0.708 2.003 sum -3.418 -16.682 -14.446 22.330 Atomic orbital electron populations 1.70136 1.06467 1.25223 1.58719 1.25633 0.96458 1.01045 1.03051 0.85163 0.77040 0.78923 0.78273 1.20697 1.22657 1.19754 1.19492 0.91225 0.83214 1.42149 0.89003 1.45496 1.01595 1.00931 1.86116 1.21447 0.84888 0.89979 0.97543 1.24356 1.00039 0.94360 0.81077 0.85261 1.24120 0.93269 1.00767 0.98251 1.23691 0.98429 0.83569 0.91870 0.84868 1.23174 0.78405 1.00053 0.99750 1.49175 1.10606 1.56758 1.15008 1.17156 0.85212 0.78336 0.82231 1.90601 1.14760 1.58626 1.79924 1.24103 0.92574 0.99743 0.95779 1.73037 1.09595 1.10375 1.11458 1.72332 1.33092 1.13864 0.97947 1.21168 0.87136 0.88382 0.89163 1.84563 1.76572 1.42297 1.23880 1.19189 0.93612 1.03927 0.96190 1.21341 0.94313 0.95717 0.98031 1.21672 0.94589 0.96689 0.97989 1.21729 1.02261 0.93533 0.92001 1.21777 0.91622 0.98201 1.02320 1.19646 0.95982 0.98224 0.91964 0.94654 0.95348 0.98639 0.87970 0.89115 0.89657 0.93405 0.70137 0.80552 0.80224 0.81572 0.83135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.94 10.56 21.65 0.23 -58.71 16 2 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 3 Si 0.98 46.35 29.55 68.60 2.03 48.38 16 4 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 5 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.23 -12.78 10.37 84.03 0.87 -11.91 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.62 -30.98 3.02 -649.51 -1.96 -32.94 16 10 C 0.19 9.51 4.75 86.97 0.41 9.93 16 11 C 0.10 4.09 5.22 46.88 0.24 4.34 16 12 H 0.13 4.75 8.05 -2.39 -0.02 4.73 16 13 C -0.13 -4.09 6.83 33.61 0.23 -3.86 16 14 C 0.13 4.99 5.53 46.95 0.26 5.25 16 15 H 0.13 4.39 8.14 -2.39 -0.02 4.37 16 16 C 0.11 4.25 4.82 87.16 0.42 4.67 16 17 N -0.58 -23.31 2.95 -772.36 -2.28 -25.59 16 18 C 0.58 23.27 7.88 86.71 0.68 23.96 16 19 O -0.56 -23.08 14.09 -4.00 -0.06 -23.14 16 20 C 0.04 1.39 7.02 43.56 0.31 1.70 16 21 N -0.21 -7.60 8.34 -44.78 -0.37 -7.98 16 22 N -0.33 -10.84 11.40 -169.54 -1.93 -12.77 16 23 C 0.34 8.41 7.90 85.33 0.67 9.08 16 24 O -0.46 -7.55 12.94 -85.65 -1.11 -8.66 16 25 C -0.12 -2.83 5.76 -21.25 -0.12 -2.95 16 26 C -0.07 -1.02 9.63 22.26 0.21 -0.81 16 27 C -0.09 -0.98 9.95 22.09 0.22 -0.76 16 28 C -0.08 -1.19 9.96 22.11 0.22 -0.97 16 29 C -0.12 -3.07 9.33 22.20 0.21 -2.86 16 30 C -0.05 -1.51 5.90 -19.98 -0.12 -1.63 16 31 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 32 H 0.03 1.59 7.46 -2.39 -0.02 1.57 16 33 H 0.00 -0.28 7.67 -2.39 -0.02 -0.30 16 34 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.09 2.93 7.53 -2.38 -0.02 2.91 16 37 H 0.05 2.16 7.73 -2.39 -0.02 2.14 16 38 H 0.43 2.35 9.06 -74.06 -0.67 1.68 16 39 H 0.18 1.16 7.75 -2.91 -0.02 1.14 16 40 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 42 H 0.15 4.53 5.28 -2.91 -0.02 4.51 16 Total: -1.00 -80.49 347.72 0.16 -80.33 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: 0.42 Total: 11.42 kcal Atomic # 6 Polarization: 24.46 SS G_CDS: 5.19 Total: 29.65 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -6.32 Total: -137.99 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -1.16 Total: -31.80 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -80.49 0.16 -80.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032745873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.345 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds