Wall clock time and date at job start Tue Mar 31 2020 23:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00372 * 2 1 4 4 H 1.48497 * 109.47080 * 269.99651 * 3 2 1 5 5 H 1.48502 * 109.47168 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47305 * 149.99819 * 3 2 1 7 7 C 1.38799 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00267 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00165 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46859 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99730 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99439 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99401 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47085 * 179.97438 * 14 13 11 16 16 O 1.42900 * 112.94327 * 311.59500 * 15 14 13 17 17 C 1.53946 * 113.74410 * 179.97438 * 15 14 13 18 18 N 1.47576 * 86.24416 * 221.88644 * 17 15 14 19 19 C 1.34780 * 134.49372 * 204.70106 * 18 17 15 20 20 O 1.21610 * 119.99888 * 174.79820 * 19 18 17 21 21 C 1.47100 * 119.99903 * 354.79497 * 19 18 17 22 22 C 1.32614 * 124.61647 * 184.55808 * 21 19 18 23 23 C 1.51121 * 110.75247 * 179.84205 * 22 21 19 24 24 C 1.54575 * 104.90083 * 343.79898 * 23 22 21 25 25 C 1.51113 * 124.61954 * 4.84959 * 21 19 18 26 26 C 1.47935 * 90.87773 * 24.63544 * 18 17 15 27 27 H 0.97006 * 119.99624 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46788 * 60.00279 * 10 9 7 29 29 H 1.09000 * 109.47063 * 299.99759 * 10 9 7 30 30 H 0.96995 * 120.00478 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.47360 * 59.99974 * 14 13 11 32 32 H 1.09000 * 109.47172 * 299.99664 * 14 13 11 33 33 H 0.96693 * 114.00422 * 48.40765 * 16 15 14 34 34 H 1.09002 * 113.77053 * 336.24735 * 17 15 14 35 35 H 1.09003 * 113.76538 * 107.52830 * 17 15 14 36 36 H 1.07999 * 124.62411 * 359.97438 * 22 21 19 37 37 H 1.08996 * 110.51441 * 224.84506 * 23 22 21 38 38 H 1.09000 * 110.15072 * 102.57077 * 23 22 21 39 39 H 1.08997 * 110.98449 * 266.70979 * 24 23 22 40 40 H 1.09004 * 111.01012 * 142.92602 * 24 23 22 41 41 H 1.08996 * 110.36920 * 315.44559 * 25 21 19 42 42 H 1.09005 * 110.36145 * 77.65635 * 25 21 19 43 43 H 1.08993 * 113.76809 * 221.05917 * 26 18 17 44 44 H 1.08996 * 113.87042 * 89.67277 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4950 0.0030 14 6 7.4905 -4.7360 0.0037 15 6 7.7562 -6.2428 0.0047 16 8 6.9922 -6.9425 0.9890 17 6 9.2515 -6.6086 0.0048 18 7 8.8971 -7.6512 -0.9776 19 6 9.4430 -8.8274 -1.3453 20 8 8.8667 -9.5423 -2.1426 21 6 10.7358 -9.2461 -0.7822 22 6 11.3960 -10.3385 -1.1422 23 6 12.6880 -10.4628 -0.3682 24 6 12.9269 -9.0596 0.2345 25 6 11.4896 -8.4935 0.2897 26 6 7.7018 -6.8851 -1.3934 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4323 -0.8874 29 1 3.6432 -3.4311 0.8927 30 1 5.4289 -5.2437 0.0029 31 1 7.9331 -4.2889 0.8938 32 1 7.9338 -4.2892 -0.8862 33 1 6.0523 -6.7156 0.9918 34 1 9.8952 -5.8263 -0.3975 35 1 9.6069 -7.0042 0.9563 36 1 11.0575 -11.0421 -1.8884 37 1 13.5073 -10.7343 -1.0338 38 1 12.5809 -11.2031 0.4246 39 1 13.5590 -8.4571 -0.4177 40 1 13.3566 -9.1315 1.2337 41 1 11.4939 -7.4256 0.0716 42 1 11.0445 -8.6785 1.2673 43 1 6.8195 -7.5033 -1.5588 44 1 7.8882 -6.1837 -2.2066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041569448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:20 Heat of formation + Delta-G solvation = -62.612935 kcal Electronic energy + Delta-G solvation = -26219.020527 eV Core-core repulsion = 22264.429849 eV Total energy + Delta-G solvation = -3954.590677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26365 -39.70995 -38.95520 -37.80456 -35.86394 -34.35132 -32.48127 -31.08500 -30.05935 -29.28918 -28.69348 -26.71363 -26.09633 -25.58479 -22.24957 -21.27217 -20.78394 -20.59617 -18.80616 -18.33149 -17.33485 -17.31445 -16.81868 -16.39792 -16.13996 -15.87679 -15.63853 -15.41098 -15.00651 -14.60848 -14.37897 -14.01077 -13.85294 -13.61435 -13.42600 -13.32021 -13.20386 -12.95047 -12.83808 -12.54255 -12.31264 -12.16887 -12.04901 -11.79328 -11.74227 -11.37231 -11.30059 -11.04747 -10.67362 -10.62367 -10.18098 -9.90704 -9.69946 -9.48007 -9.25440 -9.08734 -9.04171 -8.56825 -6.97840 -6.32965 -4.05673 0.96008 2.30196 2.60734 2.80304 2.90388 3.13538 3.27999 3.29763 3.46377 3.53057 3.68932 3.91705 4.03820 4.18092 4.28837 4.35792 4.48485 4.51908 4.65822 4.75196 4.83424 4.88857 5.00145 5.06086 5.10249 5.15561 5.16766 5.20345 5.25187 5.25560 5.28491 5.39570 5.47262 5.50082 5.65686 5.66883 5.90400 5.91765 6.06709 6.20369 7.00581 7.22467 7.33028 7.78927 7.89856 8.29114 8.37439 9.12937 10.76166 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.001778 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.419699 B =15744.490528 C =16135.386920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.126 4.126 11 C 0.535 3.465 12 O -0.513 6.513 13 N -0.739 5.739 14 C 0.105 3.895 15 C 0.086 3.914 16 O -0.527 6.527 17 C 0.118 3.882 18 N -0.634 5.634 19 C 0.593 3.407 20 O -0.541 6.541 21 C -0.190 4.190 22 C -0.073 4.073 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.092 4.092 26 C 0.083 3.917 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.383 0.617 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.138 0.862 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.030 -19.598 1.219 31.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.321 3.679 12 O -0.387 6.387 13 N -0.396 5.396 14 C -0.020 4.020 15 C 0.043 3.957 16 O -0.333 6.333 17 C -0.006 4.006 18 N -0.368 5.368 19 C 0.385 3.615 20 O -0.419 6.419 21 C -0.193 4.193 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.161 4.161 25 C -0.129 4.129 26 C -0.039 4.039 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.156 0.844 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 26.511 -18.762 0.877 32.490 hybrid contribution -1.749 -0.457 -0.224 1.822 sum 24.762 -19.219 0.652 31.352 Atomic orbital electron populations 1.69939 1.05917 1.27814 1.47855 1.24715 0.94455 0.98977 0.93137 0.86735 0.81871 0.83295 0.79939 1.19201 1.19900 1.15938 1.22304 0.88170 0.97574 1.59022 0.89336 1.84806 1.09439 0.99723 1.97445 1.23290 0.93626 1.04729 1.05982 1.20299 0.90733 0.81925 0.74964 1.90718 1.58773 1.42006 1.47217 1.45877 1.06838 1.08361 1.78536 1.21808 0.82766 0.93213 1.04206 1.22992 0.93780 0.90133 0.88781 1.86563 1.24326 1.66722 1.55704 1.23394 0.93876 0.89405 0.93880 1.49601 1.28113 1.18506 1.40625 1.17585 0.84074 0.79424 0.80444 1.90810 1.62890 1.52658 1.35575 1.21727 0.95813 0.99876 1.01897 1.24080 0.94665 0.94847 0.95667 1.21493 0.95377 0.98349 0.99222 1.22447 0.96319 0.95716 1.01660 1.21389 0.94426 0.99782 0.97273 1.24037 0.89447 0.93378 0.97085 0.91894 0.88337 0.88268 0.76950 0.89807 0.89732 0.76737 0.87576 0.88282 0.84434 0.90072 0.89523 0.90721 0.90342 0.90651 0.90160 0.89066 0.88242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.97 55.49 0.78 -25.30 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.31 27.74 -169.99 -4.72 16.59 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.24 -5.82 6.74 56.52 0.38 -5.44 16 7 C -0.52 -14.66 10.04 30.94 0.31 -14.35 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 10 C -0.13 -2.22 6.16 36.01 0.22 -2.00 16 11 C 0.53 8.32 7.85 -10.98 -0.09 8.23 16 12 O -0.51 -10.04 15.86 5.56 0.09 -9.95 16 13 N -0.74 -7.34 5.34 -60.29 -0.32 -7.66 16 14 C 0.11 0.87 5.35 -4.04 -0.02 0.85 16 15 C 0.09 0.60 1.60 -89.68 -0.14 0.46 16 16 O -0.53 -4.18 13.51 -35.23 -0.48 -4.66 16 17 C 0.12 0.74 5.98 -2.98 -0.02 0.72 16 18 N -0.63 -5.88 3.62 -178.56 -0.65 -6.53 16 19 C 0.59 6.90 8.02 -12.66 -0.10 6.80 16 20 O -0.54 -8.37 17.51 5.27 0.09 -8.27 16 21 C -0.19 -1.65 6.09 -102.73 -0.63 -2.28 16 22 C -0.07 -0.55 10.44 -36.00 -0.38 -0.92 16 23 C -0.11 -0.51 6.80 -26.85 -0.18 -0.69 16 24 C -0.12 -0.54 7.16 -25.08 -0.18 -0.72 16 25 C -0.09 -0.53 4.98 -26.85 -0.13 -0.66 16 26 C 0.08 0.67 8.25 -2.77 -0.02 0.65 16 27 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.10 1.61 8.14 -51.92 -0.42 1.18 16 29 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.40 2.75 7.02 -40.82 -0.29 2.46 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.70 7.94 -51.93 -0.41 0.29 16 33 H 0.38 2.00 7.28 45.56 0.33 2.33 16 34 H 0.11 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.10 0.57 6.80 -51.93 -0.35 0.22 16 36 H 0.14 1.06 8.04 -52.49 -0.42 0.64 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.07 0.37 6.47 -51.93 -0.34 0.03 16 42 H 0.08 0.44 7.92 -51.93 -0.41 0.03 16 43 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.10 0.70 7.96 -51.93 -0.41 0.28 16 LS Contribution 380.26 15.07 5.73 5.73 Total: -1.00 -37.69 380.26 -8.60 -46.29 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.68 Total: 0.39 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -1.45 Total: -1.25 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.19 Total: -39.48 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.30 Total: -22.88 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.59 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.69 -8.60 -46.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.324 kcal (2) G-P(sol) polarization free energy of solvation -37.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds