Wall clock time and date at job start Tue Mar 31 2020 23:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00372 * 2 1 4 4 H 1.48497 * 109.47080 * 269.99651 * 3 2 1 5 5 H 1.48502 * 109.47168 * 29.99855 * 3 2 1 6 6 H 1.48502 * 109.47305 * 149.99819 * 3 2 1 7 7 C 1.38799 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 0.02562 * 7 2 1 9 9 S 1.76203 * 120.00267 * 180.02562 * 7 2 1 10 10 C 1.80996 * 100.00165 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46859 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99730 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99439 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99401 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47085 * 179.97438 * 14 13 11 16 16 O 1.42900 * 112.94327 * 311.59500 * 15 14 13 17 17 C 1.53946 * 113.74410 * 179.97438 * 15 14 13 18 18 N 1.47576 * 86.24416 * 221.88644 * 17 15 14 19 19 C 1.34780 * 134.49372 * 204.70106 * 18 17 15 20 20 O 1.21610 * 119.99888 * 174.79820 * 19 18 17 21 21 C 1.47100 * 119.99903 * 354.79497 * 19 18 17 22 22 C 1.32614 * 124.61647 * 184.55808 * 21 19 18 23 23 C 1.51121 * 110.75247 * 179.84205 * 22 21 19 24 24 C 1.54575 * 104.90083 * 343.79898 * 23 22 21 25 25 C 1.51113 * 124.61954 * 4.84959 * 21 19 18 26 26 C 1.47935 * 90.87773 * 24.63544 * 18 17 15 27 27 H 0.97006 * 119.99624 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46788 * 60.00279 * 10 9 7 29 29 H 1.09000 * 109.47063 * 299.99759 * 10 9 7 30 30 H 0.96995 * 120.00478 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.47360 * 59.99974 * 14 13 11 32 32 H 1.09000 * 109.47172 * 299.99664 * 14 13 11 33 33 H 0.96693 * 114.00422 * 48.40765 * 16 15 14 34 34 H 1.09002 * 113.77053 * 336.24735 * 17 15 14 35 35 H 1.09003 * 113.76538 * 107.52830 * 17 15 14 36 36 H 1.07999 * 124.62411 * 359.97438 * 22 21 19 37 37 H 1.08996 * 110.51441 * 224.84506 * 23 22 21 38 38 H 1.09000 * 110.15072 * 102.57077 * 23 22 21 39 39 H 1.08997 * 110.98449 * 266.70979 * 24 23 22 40 40 H 1.09004 * 111.01012 * 142.92602 * 24 23 22 41 41 H 1.08996 * 110.36920 * 315.44559 * 25 21 19 42 42 H 1.09005 * 110.36145 * 77.65635 * 25 21 19 43 43 H 1.08993 * 113.76809 * 221.05917 * 26 18 17 44 44 H 1.08996 * 113.87042 * 89.67277 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 16 3.7723 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2327 0.0026 12 8 6.3439 -2.2965 0.0024 13 7 6.0455 -4.4950 0.0030 14 6 7.4905 -4.7360 0.0037 15 6 7.7562 -6.2428 0.0047 16 8 6.9922 -6.9425 0.9890 17 6 9.2515 -6.6086 0.0048 18 7 8.8971 -7.6512 -0.9776 19 6 9.4430 -8.8274 -1.3453 20 8 8.8667 -9.5423 -2.1426 21 6 10.7358 -9.2461 -0.7822 22 6 11.3960 -10.3385 -1.1422 23 6 12.6880 -10.4628 -0.3682 24 6 12.9269 -9.0596 0.2345 25 6 11.4896 -8.4935 0.2897 26 6 7.7018 -6.8851 -1.3934 27 1 -0.4850 0.8401 -0.0004 28 1 3.6439 -3.4323 -0.8874 29 1 3.6432 -3.4311 0.8927 30 1 5.4289 -5.2437 0.0029 31 1 7.9331 -4.2889 0.8938 32 1 7.9338 -4.2892 -0.8862 33 1 6.0523 -6.7156 0.9918 34 1 9.8952 -5.8263 -0.3975 35 1 9.6069 -7.0042 0.9563 36 1 11.0575 -11.0421 -1.8884 37 1 13.5073 -10.7343 -1.0338 38 1 12.5809 -11.2031 0.4246 39 1 13.5590 -8.4571 -0.4177 40 1 13.3566 -9.1315 1.2337 41 1 11.4939 -7.4256 0.0716 42 1 11.0445 -8.6785 1.2673 43 1 6.8195 -7.5033 -1.5588 44 1 7.8882 -6.1837 -2.2066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041569448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:19 Heat of formation + Delta-G solvation = -92.471319 kcal Electronic energy + Delta-G solvation = -26220.315283 eV Core-core repulsion = 22264.429849 eV Total energy + Delta-G solvation = -3955.885434 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96157 -40.67767 -39.81098 -38.49051 -36.61291 -35.32213 -34.65642 -32.00666 -30.96423 -29.90748 -29.32555 -27.86987 -27.27996 -26.81977 -22.89016 -21.92032 -21.71921 -21.18866 -20.02919 -19.40480 -18.56086 -17.94091 -17.80206 -17.29383 -17.10852 -16.83867 -16.74116 -16.53353 -16.09370 -15.77003 -15.45110 -15.09617 -14.85519 -14.70511 -14.48397 -14.29735 -14.02574 -13.76541 -13.57506 -13.32969 -13.30437 -13.07436 -12.99452 -12.89017 -12.67759 -12.63859 -12.26545 -12.08997 -11.89020 -11.82647 -11.29151 -11.15857 -11.08652 -10.91648 -10.51826 -10.21766 -10.11938 -9.71630 -8.97381 -8.50249 -6.20755 0.30440 1.00310 1.32941 1.47564 1.55711 1.56014 1.65032 2.10545 2.18894 2.26255 2.71376 2.73288 2.88313 3.04407 3.33665 3.53871 3.59855 3.77357 3.92319 3.98932 4.18994 4.25869 4.26407 4.31641 4.39177 4.46782 4.50820 4.54536 4.59906 4.68152 4.78818 4.79833 4.83021 4.92052 4.96271 5.17312 5.26753 5.34260 5.38316 5.50298 5.71730 6.13040 6.32317 6.50502 6.53873 6.95095 6.98233 7.14600 8.61996 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.001778 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.419699 B =15744.490528 C =16135.386920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.261 1.261 6 H -0.234 1.234 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.115 4.115 11 C 0.542 3.458 12 O -0.556 6.556 13 N -0.714 5.714 14 C 0.109 3.891 15 C 0.102 3.898 16 O -0.540 6.540 17 C 0.119 3.881 18 N -0.637 5.637 19 C 0.580 3.420 20 O -0.597 6.597 21 C -0.212 4.212 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.088 4.088 26 C 0.074 3.926 27 H 0.276 0.724 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.413 0.587 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.394 0.606 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.635 -19.694 2.154 34.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.158 1.158 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.266 4.266 11 C 0.328 3.672 12 O -0.433 6.433 13 N -0.370 5.370 14 C -0.015 4.015 15 C 0.059 3.941 16 O -0.348 6.348 17 C -0.003 4.003 18 N -0.370 5.370 19 C 0.374 3.626 20 O -0.480 6.480 21 C -0.215 4.215 22 C -0.093 4.093 23 C -0.141 4.141 24 C -0.157 4.157 25 C -0.124 4.124 26 C -0.048 4.048 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.251 0.749 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.245 0.755 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 29.110 -18.881 1.841 34.746 hybrid contribution -2.564 -0.636 -0.533 2.695 sum 26.546 -19.516 1.308 32.974 Atomic orbital electron populations 1.70024 1.07373 1.28979 1.49191 1.25581 0.95259 1.02321 0.92930 0.85859 0.80742 0.79559 0.80162 1.18784 1.18574 1.15806 1.22484 0.90434 0.96645 1.58167 0.91952 1.84694 1.06210 1.06281 1.97595 1.23296 0.96005 0.99595 1.07657 1.19826 0.89268 0.83103 0.75046 1.90712 1.59190 1.43656 1.49750 1.45574 1.08301 1.06981 1.76121 1.21916 0.81052 0.93865 1.04679 1.22809 0.94354 0.88970 0.87942 1.86563 1.25357 1.67043 1.55818 1.23691 0.93657 0.89057 0.93856 1.49720 1.28244 1.18336 1.40692 1.18160 0.84880 0.79621 0.79982 1.90764 1.64581 1.54422 1.38215 1.21874 0.95120 1.01112 1.03417 1.24363 0.95795 0.94011 0.95092 1.21556 0.94003 0.99179 0.99349 1.22476 0.95432 0.95077 1.02694 1.21417 0.94829 1.00034 0.96170 1.24214 0.88974 0.93432 0.98216 0.91441 0.86775 0.86573 0.74942 0.89609 0.89027 0.75502 0.84741 0.87269 0.85698 0.88724 0.88415 0.90217 0.88666 0.89676 0.89848 0.90114 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.12 13.97 21.65 0.30 -54.82 16 2 C 0.04 2.56 5.50 84.86 0.47 3.02 16 3 Si 0.91 43.97 27.74 68.60 1.90 45.87 16 4 H -0.26 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.23 -11.13 6.74 99.48 0.67 -10.46 16 7 C -0.53 -29.96 10.04 67.95 0.68 -29.27 16 8 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 9 S -0.17 -8.35 18.55 -56.49 -1.05 -9.40 16 10 C -0.11 -3.86 6.16 71.24 0.44 -3.42 16 11 C 0.54 15.70 7.85 87.66 0.69 16.38 16 12 O -0.56 -20.79 15.86 -3.02 -0.05 -20.84 16 13 N -0.71 -12.17 5.34 -463.05 -2.47 -14.64 16 14 C 0.11 1.48 5.35 86.38 0.46 1.94 16 15 C 0.10 1.18 1.60 -10.14 -0.02 1.16 16 16 O -0.54 -7.29 13.51 -148.98 -2.01 -9.31 16 17 C 0.12 1.17 5.98 86.48 0.52 1.69 16 18 N -0.64 -11.10 3.62 -840.49 -3.04 -14.14 16 19 C 0.58 13.61 8.02 86.57 0.69 14.30 16 20 O -0.60 -19.38 17.51 -4.06 -0.07 -19.45 16 21 C -0.21 -3.55 6.09 -18.57 -0.11 -3.66 16 22 C -0.07 -1.06 10.44 24.66 0.26 -0.80 16 23 C -0.10 -0.76 6.80 30.52 0.21 -0.55 16 24 C -0.12 -0.69 7.16 31.67 0.23 -0.47 16 25 C -0.09 -0.81 4.98 30.52 0.15 -0.66 16 26 C 0.07 1.09 8.25 86.41 0.71 1.80 16 27 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 28 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 29 H 0.12 3.54 8.14 -2.40 -0.02 3.52 16 30 H 0.41 4.47 7.02 -92.71 -0.65 3.82 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.23 7.94 -2.39 -0.02 1.21 16 33 H 0.39 3.12 7.28 -74.06 -0.54 2.58 16 34 H 0.13 0.60 8.10 -2.39 -0.02 0.58 16 35 H 0.11 0.92 6.80 -2.39 -0.02 0.90 16 36 H 0.13 2.05 8.04 -2.91 -0.02 2.03 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.08 0.59 6.47 -2.39 -0.02 0.57 16 42 H 0.08 0.71 7.92 -2.38 -0.02 0.69 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.11 1.37 7.96 -2.39 -0.02 1.35 16 Total: -1.00 -84.00 380.26 -1.30 -85.30 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -0.19 Total: 9.95 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.38 Total: 1.47 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -5.21 Total: -83.60 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.13 Total: -49.60 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.05 Total: -9.40 kcal Total: -84.00 -1.30 -85.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041569448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.167 kcal (2) G-P(sol) polarization free energy of solvation -84.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds