Wall clock time and date at job start Tue Mar 31 2020 23:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99836 * 2 1 4 4 H 1.48497 * 109.47153 * 274.98387 * 3 2 1 5 5 H 1.48497 * 109.47423 * 34.98957 * 3 2 1 6 6 H 1.48507 * 109.46926 * 154.98897 * 3 2 1 7 7 C 1.38804 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99894 * 186.81855 * 7 2 1 9 9 N 1.36933 * 120.00449 * 6.81452 * 7 2 1 10 10 C 1.46642 * 126.55979 * 354.40296 * 9 7 2 11 11 C 1.50787 * 107.69989 * 179.97438 * 10 9 7 12 12 C 1.38447 * 131.20235 * 179.97438 * 11 10 9 13 13 C 1.38142 * 120.10422 * 180.02562 * 12 11 10 14 14 C 1.38254 * 119.95670 * 359.97438 * 13 12 11 15 15 C 1.50705 * 120.01273 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.47091 * 90.00313 * 15 14 13 17 17 C 1.34774 * 120.00434 * 179.97438 * 16 15 14 18 18 O 1.21520 * 119.99803 * 0.02562 * 17 16 15 19 19 C 1.48150 * 120.00334 * 179.97438 * 17 16 15 20 20 C 1.39890 * 121.12250 * 0.21944 * 19 17 16 21 21 N 1.31764 * 119.78660 * 180.28238 * 20 19 17 22 22 N 1.28278 * 122.41778 * 359.74722 * 21 20 19 23 23 C 1.32273 * 122.43646 * 359.97438 * 22 21 20 24 24 O 1.35700 * 120.07951 * 180.02562 * 23 22 21 25 25 C 1.39235 * 119.83862 * 0.02562 * 23 22 21 26 26 C 1.38141 * 119.96934 * 0.27299 * 14 13 12 27 27 C 1.38061 * 108.86106 * 0.02562 * 11 10 9 28 28 C 1.46639 * 126.56807 * 174.39931 * 9 7 2 29 29 H 0.97002 * 120.00384 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.81464 * 60.45179 * 10 9 7 31 31 H 1.08996 * 109.81255 * 299.53953 * 10 9 7 32 32 H 1.07997 * 119.94823 * 0.02664 * 12 11 10 33 33 H 1.07998 * 120.02193 * 179.97438 * 13 12 11 34 34 H 1.08994 * 109.47583 * 330.00371 * 15 14 13 35 35 H 1.08999 * 109.46903 * 209.99787 * 15 14 13 36 36 H 0.97006 * 120.00164 * 359.97438 * 16 15 14 37 37 H 1.07999 * 120.10949 * 0.05014 * 20 19 17 38 38 H 0.96696 * 114.00091 * 269.97929 * 24 23 22 39 39 H 1.08001 * 121.11672 * 179.97438 * 25 23 22 40 40 H 1.08002 * 119.95307 * 179.72381 * 26 14 13 41 41 H 1.08997 * 109.81495 * 60.45062 * 28 9 7 42 42 H 1.09009 * 109.80917 * 299.54875 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6199 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0845 -1.2055 0.1105 9 7 1.3328 -2.3838 -0.1418 10 6 -0.1228 -2.5562 -0.1871 11 6 -0.4051 -4.0280 -0.3534 12 6 -1.5989 -4.7224 -0.4507 13 6 -1.5915 -6.0956 -0.6005 14 6 -0.3902 -6.7778 -0.6540 15 6 -0.3807 -8.2760 -0.8169 16 7 -0.3539 -8.6120 -2.2426 17 6 -0.3408 -9.9026 -2.6307 18 8 -0.3517 -10.7876 -1.7980 19 6 -0.3142 -10.2424 -4.0725 20 6 -0.2976 -9.2427 -5.0508 21 7 -0.2797 -9.5747 -6.3258 22 7 -0.2719 -10.7959 -6.7183 23 6 -0.2808 -11.8130 -5.8727 24 8 -0.2713 -13.0867 -6.3408 25 6 -0.2998 -11.5736 -4.5013 26 6 0.8012 -6.0862 -0.5519 27 6 0.7945 -4.7095 -0.4057 28 6 1.9240 -3.7189 -0.2767 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5342 -2.0037 -1.0319 31 1 -0.5664 -2.1973 0.7416 32 1 -2.5374 -4.1896 -0.4094 33 1 -2.5236 -6.6359 -0.6759 34 1 -1.2771 -8.6968 -0.3614 35 1 0.5026 -8.6888 -0.3297 36 1 -0.3455 -7.9056 -2.9074 37 1 -0.3033 -8.2020 -4.7621 38 1 -1.1518 -13.4582 -6.4880 39 1 -0.3077 -12.3884 -3.7925 40 1 1.7394 -6.6199 -0.5893 41 1 2.5195 -3.9503 0.6064 42 1 2.5518 -3.7567 -1.1671 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054269697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:29 Heat of formation + Delta-G solvation = 50.337251 kcal Electronic energy + Delta-G solvation = -27256.587088 eV Core-core repulsion = 23203.743098 eV Total energy + Delta-G solvation = -4052.843990 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87346 -40.17868 -39.52287 -38.15719 -36.55247 -34.87028 -33.88118 -32.38927 -31.97076 -31.25466 -29.86379 -27.86805 -26.38891 -25.67334 -25.05538 -24.26698 -22.14178 -21.55510 -20.52042 -20.37586 -19.53443 -18.70458 -17.89430 -17.09789 -16.91388 -16.33789 -16.19477 -15.77795 -15.57364 -14.88065 -14.80089 -14.48921 -14.41513 -14.28202 -14.13566 -13.94395 -13.34324 -13.12622 -12.81265 -12.67353 -12.10584 -11.96866 -11.92038 -11.77031 -11.64170 -11.14721 -10.97454 -10.87268 -10.85955 -10.57928 -10.37016 -10.31672 -10.19127 -10.01640 -9.87543 -9.54054 -9.00816 -8.53826 -8.12995 -6.92488 -5.89154 -3.21642 -0.29992 0.14788 1.40755 1.63040 2.17373 2.55671 2.77998 3.02699 3.33639 3.38841 3.40911 3.60465 3.75932 3.94466 4.08147 4.21964 4.34249 4.38383 4.56744 4.82598 4.93581 5.12330 5.16795 5.19406 5.30884 5.34073 5.38482 5.46730 5.48809 5.73887 5.88610 5.91725 5.99149 6.38507 6.44970 6.47601 6.64011 6.65329 6.69389 6.94641 6.95590 7.23282 7.24190 7.45149 7.58283 7.62397 8.01421 8.06355 9.04404 9.64528 10.31311 11.25291 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020408 B = 0.001952 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.675495 B =14339.159651 C =15007.110780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.005 4.005 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.084 0.916 9 N -0.600 5.600 10 C 0.203 3.797 11 C -0.077 4.077 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.138 4.138 15 C 0.170 3.830 16 N -0.710 5.710 17 C 0.560 3.440 18 O -0.524 6.524 19 C -0.113 4.113 20 C 0.061 3.939 21 N -0.210 5.210 22 N -0.242 5.242 23 C 0.257 3.743 24 O -0.470 6.470 25 C -0.075 4.075 26 C -0.082 4.082 27 C -0.106 4.106 28 C 0.175 3.825 29 H 0.256 0.744 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.405 0.595 37 H 0.182 0.818 38 H 0.409 0.591 39 H 0.170 0.830 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.050 -22.259 -7.156 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.202 4.202 3 Si 0.747 3.253 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.102 0.898 9 N -0.327 5.327 10 C 0.079 3.921 11 C -0.078 4.078 12 C -0.130 4.130 13 C -0.120 4.120 14 C -0.138 4.138 15 C 0.048 3.952 16 N -0.361 5.361 17 C 0.345 3.655 18 O -0.401 6.401 19 C -0.127 4.127 20 C -0.104 4.104 21 N -0.053 5.053 22 N -0.095 5.095 23 C 0.071 3.929 24 O -0.276 6.276 25 C -0.106 4.106 26 C -0.101 4.101 27 C -0.106 4.106 28 C 0.049 3.951 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.199 0.801 38 H 0.268 0.732 39 H 0.187 0.813 40 H 0.136 0.864 41 H 0.054 0.946 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.467 -22.180 -8.033 24.009 hybrid contribution -0.101 0.654 1.158 1.334 sum -4.568 -21.525 -6.875 23.053 Atomic orbital electron populations 1.69927 1.05033 1.25581 1.56222 1.24857 0.95807 0.97911 1.01642 0.86022 0.78666 0.83006 0.77620 1.21406 1.21622 1.20460 1.18979 0.91156 0.81558 1.43863 0.89807 1.43954 1.01117 1.00983 1.86632 1.19778 0.85806 0.84860 1.01655 1.21579 0.92954 0.99270 0.94021 1.20514 0.97411 0.93463 1.01658 1.20825 0.96848 0.93980 1.00386 1.19397 0.93635 0.93617 1.07197 1.20214 1.03280 0.91669 0.79995 1.46103 1.73732 1.06671 1.09624 1.17857 0.77503 0.83345 0.86842 1.90823 1.49172 1.47238 1.52825 1.21277 1.01493 0.94232 0.95708 1.24677 0.94141 1.01524 0.90093 1.73126 1.08297 1.08706 1.15201 1.72838 1.08698 0.95134 1.32823 1.20797 0.96323 0.87131 0.88644 1.84822 1.34612 1.21305 1.86826 1.22796 0.93545 0.97849 0.96459 1.20313 0.97171 0.92587 1.00048 1.20743 0.97069 0.93441 0.99394 1.19719 0.92289 0.84491 0.98575 0.93412 0.91453 0.91953 0.86011 0.86241 0.90223 0.90228 0.75918 0.80064 0.73203 0.81295 0.86437 0.94593 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.99 10.49 55.49 0.58 -25.41 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.92 21.34 29.56 -169.99 -5.02 16.32 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.23 -6.15 10.31 -15.06 -0.16 -6.31 16 8 H 0.08 2.17 7.84 -52.48 -0.41 1.75 16 9 N -0.60 -15.00 3.41 -175.66 -0.60 -15.59 16 10 C 0.20 4.77 5.40 -5.07 -0.03 4.75 16 11 C -0.08 -1.44 6.22 -104.57 -0.65 -2.09 16 12 C -0.11 -1.68 10.05 -39.54 -0.40 -2.08 16 13 C -0.10 -1.23 9.70 -39.61 -0.38 -1.62 16 14 C -0.14 -1.60 5.25 -104.65 -0.55 -2.15 16 15 C 0.17 1.61 5.80 -5.19 -0.03 1.58 16 16 N -0.71 -5.85 5.51 -62.33 -0.34 -6.19 16 17 C 0.56 5.26 7.80 -12.19 -0.10 5.16 16 18 O -0.52 -6.53 16.49 5.35 0.09 -6.44 16 19 C -0.11 -0.91 5.92 -104.60 -0.62 -1.53 16 20 C 0.06 0.47 10.84 -16.96 -0.18 0.29 16 21 N -0.21 -2.15 11.48 30.79 0.35 -1.79 16 22 N -0.24 -2.54 11.50 30.49 0.35 -2.19 16 23 C 0.26 2.11 7.85 -16.99 -0.13 1.98 16 24 O -0.47 -2.93 13.57 -18.80 -0.26 -3.19 16 25 C -0.08 -0.57 9.72 -38.61 -0.38 -0.95 16 26 C -0.08 -1.12 9.70 -39.54 -0.38 -1.50 16 27 C -0.11 -1.86 6.22 -104.57 -0.65 -2.51 16 28 C 0.17 3.56 7.25 -5.08 -0.04 3.52 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.07 1.74 7.38 -51.93 -0.38 1.35 16 31 H 0.06 1.61 7.62 -51.93 -0.40 1.22 16 32 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 35 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.40 2.66 6.62 -40.82 -0.27 2.39 16 37 H 0.18 0.88 6.53 -52.49 -0.34 0.54 16 38 H 0.41 0.34 9.06 45.56 0.41 0.75 16 39 H 0.17 1.08 7.79 -52.49 -0.41 0.68 16 40 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -33.76 364.61 -8.01 -41.77 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -3.89 Total: 0.92 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -4.77 Total: -3.69 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.34 Total: -51.18 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.17 Total: -9.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.76 -8.01 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054269697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.105 kcal (2) G-P(sol) polarization free energy of solvation -33.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds