Wall clock time and date at job start Tue Mar 31 2020 23:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48505 * 109.47221 * 270.00169 * 3 2 1 5 5 H 1.48496 * 109.46895 * 30.00103 * 3 2 1 6 6 H 1.48498 * 109.47127 * 150.00638 * 3 2 1 7 7 C 1.38805 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00130 * 359.97438 * 7 2 1 9 9 S 1.76197 * 119.99770 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99861 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47040 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00202 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00124 * 179.97438 * 11 10 9 14 14 C 1.47134 * 121.05413 * 0.02562 * 13 11 10 15 15 C 1.53222 * 108.73042 * 127.75294 * 14 13 11 16 16 O 1.43115 * 109.33802 * 54.13285 * 15 14 13 17 17 C 1.42488 * 113.96715 * 300.02529 * 16 15 14 18 18 C 1.53464 * 113.75610 * 286.83740 * 17 16 15 19 19 N 1.47671 * 85.96570 * 221.98945 * 18 17 16 20 20 C 1.34775 * 134.45252 * 204.30879 * 19 18 17 21 21 O 1.21282 * 119.99984 * 179.97438 * 20 19 18 22 22 C 1.50697 * 120.00447 * 359.97151 * 20 19 18 23 23 C 1.52998 * 117.50439 * 248.62141 * 22 20 19 24 24 C 1.52995 * 60.00033 * 252.50742 * 23 22 20 25 25 C 1.47666 * 91.09198 * 24.29280 * 19 18 17 26 26 C 1.47343 * 121.05844 * 179.97438 * 13 11 10 27 27 H 0.96995 * 119.99826 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47161 * 60.00117 * 10 9 7 29 29 H 1.09001 * 109.46999 * 299.99959 * 10 9 7 30 30 H 1.09002 * 109.59183 * 7.97755 * 14 13 11 31 31 H 1.08997 * 109.58935 * 247.53037 * 14 13 11 32 32 H 1.09000 * 109.49410 * 294.17382 * 15 14 13 33 33 H 1.08997 * 109.49494 * 174.09298 * 15 14 13 34 34 H 1.09000 * 113.79056 * 336.25130 * 18 17 16 35 35 H 1.08997 * 113.79575 * 107.72764 * 18 17 16 36 36 H 1.09008 * 115.54484 * 34.33303 * 22 20 19 37 37 H 1.09001 * 117.49506 * 0.02562 * 23 22 20 38 38 H 1.09002 * 117.49832 * 145.01237 * 23 22 20 39 39 H 1.09005 * 117.50230 * 252.50582 * 24 23 22 40 40 H 1.09004 * 117.49623 * 107.48749 * 24 23 22 41 41 H 1.08997 * 113.79632 * 221.44360 * 25 19 18 42 42 H 1.08998 * 113.79681 * 89.96844 * 25 19 18 43 43 H 1.08996 * 109.74588 * 108.77378 * 26 13 11 44 44 H 1.08997 * 109.78337 * 348.07230 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3440 -2.2964 -0.0024 13 7 6.0456 -4.4948 -0.0030 14 6 5.1314 -5.6476 -0.0039 15 6 5.5222 -6.5846 -1.1515 16 8 6.9083 -6.9218 -1.0369 17 6 7.7836 -5.7988 -1.0908 18 6 7.9230 -5.1905 -2.4928 19 7 9.3638 -5.0804 -2.1881 20 6 10.3653 -4.2957 -2.6327 21 8 11.4856 -4.4326 -2.1888 22 6 10.0932 -3.2482 -3.6813 23 6 10.6983 -3.4646 -5.0698 24 6 11.2716 -2.3894 -4.1446 25 6 9.2673 -6.1743 -1.2008 26 6 7.4942 -4.7640 -0.0037 27 1 -0.4850 0.8400 0.0004 28 1 3.6432 -3.4311 -0.8926 29 1 3.6439 -3.4322 0.8873 30 1 4.1075 -5.3020 -0.1467 31 1 5.2114 -6.1782 0.9448 32 1 5.3469 -6.0854 -2.1045 33 1 4.9215 -7.4927 -1.1003 34 1 7.6962 -5.8878 -3.2993 35 1 7.4229 -4.2287 -2.6067 36 1 9.1141 -2.7722 -3.6272 37 1 11.2929 -4.3649 -5.2249 38 1 10.1172 -3.1311 -5.9296 39 1 11.0678 -1.3484 -4.3956 40 1 12.2438 -2.5821 -3.6908 41 1 9.8352 -5.9942 -0.2880 42 1 9.4403 -7.1642 -1.6229 43 1 7.7964 -5.1561 0.9674 44 1 8.0402 -3.8448 -0.2158 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001068314719.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:40 Heat of formation + Delta-G solvation = -34.912369 kcal Electronic energy + Delta-G solvation = -27618.554270 eV Core-core repulsion = 23665.164780 eV Total energy + Delta-G solvation = -3953.389491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.52937 -39.86440 -38.84874 -37.27560 -36.13601 -34.91141 -32.50796 -31.58601 -29.82988 -28.84092 -26.96012 -26.41906 -25.63563 -24.31047 -23.24737 -22.70016 -20.60229 -19.56686 -18.92911 -17.90863 -17.84277 -17.31108 -17.03504 -16.38428 -15.84162 -15.78351 -15.33665 -15.08664 -15.02239 -14.93883 -14.68117 -13.99663 -13.93346 -13.79795 -13.60776 -13.25209 -12.88774 -12.86945 -12.77545 -12.42162 -12.23474 -11.96666 -11.84586 -11.54894 -11.32749 -11.06920 -11.04143 -10.93119 -10.81092 -10.68388 -10.50838 -10.05494 -9.92951 -9.65310 -9.16129 -9.07065 -8.73231 -8.58278 -7.00914 -6.35688 -4.08477 2.19520 2.25496 2.49689 2.74341 3.00958 3.17949 3.27455 3.44934 3.48975 3.56569 3.87208 3.94853 4.12402 4.26474 4.42433 4.48185 4.54898 4.59574 4.67449 4.78175 4.79999 4.91753 4.96395 4.99121 5.03545 5.05299 5.15645 5.21714 5.27308 5.31878 5.35975 5.39512 5.50509 5.55756 5.56639 5.61844 5.67675 5.83567 5.85312 6.21321 6.65751 7.21896 7.26634 7.84191 7.87215 8.23333 8.34201 9.10382 10.73472 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.003078 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.611656 B = 9095.184829 C =10681.101324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.122 4.122 11 C 0.536 3.464 12 O -0.513 6.513 13 N -0.623 5.623 14 C 0.071 3.929 15 C 0.046 3.954 16 O -0.357 6.357 17 C 0.067 3.933 18 C 0.084 3.916 19 N -0.638 5.638 20 C 0.575 3.425 21 O -0.538 6.538 22 C -0.192 4.192 23 C -0.152 4.152 24 C -0.145 4.145 25 C 0.130 3.870 26 C 0.113 3.887 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.736 -15.431 -6.685 23.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.272 4.272 11 C 0.324 3.676 12 O -0.386 6.386 13 N -0.360 5.360 14 C -0.052 4.052 15 C -0.031 4.031 16 O -0.275 6.275 17 C 0.025 3.975 18 C -0.039 4.039 19 N -0.375 5.375 20 C 0.365 3.635 21 O -0.415 6.415 22 C -0.213 4.213 23 C -0.189 4.189 24 C -0.183 4.183 25 C 0.008 3.992 26 C -0.010 4.010 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 17.520 -14.041 -6.480 23.369 hybrid contribution -1.267 -0.205 -0.037 1.284 sum 16.253 -14.247 -6.517 22.574 Atomic orbital electron populations 1.69930 1.05913 1.27856 1.47843 1.24706 0.94443 0.98963 0.93110 0.86749 0.81911 0.83321 0.79960 1.19181 1.19857 1.15940 1.22285 0.88107 0.97544 1.59060 0.89349 1.84846 1.09475 0.99681 1.97419 1.23308 0.93636 1.04619 1.05682 1.20367 0.90812 0.81464 0.74977 1.90715 1.58711 1.41444 1.47780 1.48165 1.05960 1.05899 1.75970 1.22444 0.95257 0.87531 1.00008 1.23067 0.82077 1.00118 0.97824 1.87949 1.16091 1.29483 1.93948 1.23398 0.91161 0.88089 0.94829 1.23808 0.80121 1.02263 0.97715 1.49527 1.09662 1.35580 1.42743 1.19278 0.82575 0.80433 0.81195 1.90705 1.21674 1.70531 1.58583 1.22117 1.01183 1.01676 0.96289 1.22944 1.02865 1.01576 0.91524 1.22978 0.97312 0.96540 1.01441 1.23053 0.91424 0.91718 0.93030 1.21767 0.82326 0.99134 0.97762 0.91862 0.88464 0.88333 0.87847 0.90140 0.92070 0.86970 0.88561 0.89192 0.85671 0.88355 0.87616 0.87611 0.87389 0.88739 0.88223 0.90130 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.89 13.97 55.49 0.78 -25.11 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.25 27.74 -169.99 -4.71 16.54 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 7 C -0.52 -14.50 10.04 30.94 0.31 -14.19 16 8 H 0.09 2.55 8.03 -52.49 -0.42 2.12 16 9 S -0.14 -3.42 18.55 -107.50 -1.99 -5.41 16 10 C -0.12 -2.20 4.52 36.01 0.16 -2.03 16 11 C 0.54 8.94 7.73 -10.99 -0.08 8.85 16 12 O -0.51 -10.49 15.36 5.55 0.09 -10.40 16 13 N -0.62 -7.61 3.03 -172.45 -0.52 -8.13 16 14 C 0.07 0.63 6.50 -3.58 -0.02 0.60 16 15 C 0.05 0.33 6.89 37.27 0.26 0.59 16 16 O -0.36 -3.08 10.52 -35.23 -0.37 -3.45 16 17 C 0.07 0.61 1.27 -90.32 -0.12 0.49 16 18 C 0.08 0.76 7.44 -3.17 -0.02 0.73 16 19 N -0.64 -6.74 3.47 -180.81 -0.63 -7.37 16 20 C 0.57 7.20 7.84 -10.99 -0.09 7.11 16 21 O -0.54 -8.45 16.99 5.56 0.09 -8.35 16 22 C -0.19 -1.96 5.94 -91.78 -0.54 -2.50 16 23 C -0.15 -1.23 10.23 -26.73 -0.27 -1.50 16 24 C -0.15 -1.33 10.04 -26.73 -0.27 -1.60 16 25 C 0.13 1.16 8.24 -3.18 -0.03 1.13 16 26 C 0.11 1.26 5.69 -3.66 -0.02 1.24 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.10 1.58 7.69 -51.92 -0.40 1.18 16 29 H 0.10 1.66 7.99 -51.92 -0.41 1.24 16 30 H 0.10 0.88 6.03 -51.93 -0.31 0.57 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.44 7.80 -51.93 -0.40 0.03 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.13 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.10 7.67 -51.93 -0.40 0.70 16 41 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 42 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.11 1.43 6.97 -51.93 -0.36 1.07 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -35.17 378.39 -8.92 -44.08 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.51 Total: 0.32 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -0.83 Total: 1.59 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: -0.37 Total: -40.61 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.19 Total: -22.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.71 Total: 16.54 kcal Atomic # 16 Polarization: -3.42 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.17 -8.92 -44.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001068314719.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.172 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds