Wall clock time and date at job start Tue Mar 31 2020 23:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35780 * 116.99765 * 2 1 4 4 C 1.40349 * 120.90912 * 90.00032 * 3 2 1 5 5 O 1.35552 * 120.48333 * 359.97438 * 4 3 2 6 6 N 1.32403 * 119.02650 * 179.97438 * 4 3 2 7 7 C 1.32499 * 120.97603 * 0.02562 * 6 4 3 8 8 O 1.35545 * 118.99137 * 179.97438 * 7 6 4 9 9 N 1.31849 * 122.01336 * 359.97414 * 7 6 4 10 10 C 1.33534 * 120.87110 * 359.75491 * 9 7 6 11 11 C 1.48066 * 120.53739 * 180.28703 * 10 9 7 12 12 O 1.21522 * 120.00371 * 180.23416 * 11 10 9 13 13 N 1.34783 * 119.99982 * 0.23858 * 11 10 9 14 14 C 1.46501 * 119.99904 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.64232 * 34.29336 * 14 13 11 16 16 C 1.54320 * 110.71657 * 271.15275 * 14 13 11 17 17 N 1.47022 * 107.27303 * 219.44274 * 16 14 13 18 18 C 1.36936 * 125.65493 * 178.97868 * 17 16 14 19 19 H 1.08003 * 119.99393 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00575 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99679 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00342 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47360 * 59.99360 * 22 20 18 24 24 H 1.48495 * 109.47569 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46737 * 299.99810 * 22 20 18 26 26 C 1.47435 * 108.70101 * 358.94371 * 17 16 14 27 27 C 1.55126 * 104.93910 * 24.00310 * 26 17 16 28 28 H 1.09007 * 111.15808 * 205.13264 * 27 26 17 29 29 O 1.42895 * 110.93903 * 81.21745 * 27 26 17 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00252 * 1 2 3 32 32 H 1.09001 * 109.46558 * 60.00300 * 1 2 3 33 33 H 0.96701 * 114.00079 * 90.00091 * 5 4 3 34 34 H 0.96701 * 113.99811 * 89.99892 * 8 7 6 35 35 H 0.96997 * 119.99950 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.88667 * 338.86029 * 16 14 13 37 37 H 1.09001 * 109.88469 * 100.02778 * 16 14 13 38 38 H 0.96999 * 120.00083 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.36880 * 142.96609 * 26 17 16 40 40 H 1.08996 * 110.36403 * 265.17598 * 26 17 16 41 41 H 0.96698 * 114.00043 * 67.95386 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3727 1.8522 1.2042 5 8 2.0776 1.2741 2.3942 6 7 2.9739 3.0311 1.1607 7 6 3.2664 3.6051 0.0029 8 8 3.8817 4.8129 0.0053 9 7 2.9772 3.0375 -1.1515 10 6 2.3757 1.8462 -1.1976 11 6 2.0600 1.2126 -2.4981 12 8 1.5087 0.1301 -2.5287 13 7 2.3843 1.8364 -3.6480 14 6 2.0725 1.2093 -4.9347 15 1 1.1409 0.6469 -4.8723 16 6 3.2307 0.2982 -5.3929 17 7 3.3771 0.4751 -6.8450 18 6 4.3094 -0.1435 -7.6345 19 1 5.0189 -0.8294 -7.1957 20 6 4.3426 0.1110 -8.9987 21 7 3.4777 0.9465 -9.5335 22 14 5.6139 -0.7335 -10.0757 23 1 5.4367 -2.2053 -9.9895 24 1 5.4398 -0.2950 -11.4837 25 1 6.9766 -0.3709 -9.6098 26 6 2.3534 1.4284 -7.3107 27 6 1.9964 2.2744 -6.0604 28 1 0.9911 2.6884 -6.1393 29 8 2.9594 3.3094 -5.8522 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.7790 0.7051 2.7397 34 1 4.8474 4.7623 0.0060 35 1 2.8241 2.7006 -3.6236 36 1 4.1526 0.5888 -4.8892 37 1 2.9952 -0.7421 -5.1682 38 1 3.5006 1.1241 -10.4868 39 1 2.7577 2.0649 -8.0978 40 1 1.4736 0.8947 -7.6700 41 1 2.9495 3.9981 -6.5308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083949789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:20 Heat of formation + Delta-G solvation = -90.589428 kcal Electronic energy + Delta-G solvation = -30188.672209 eV Core-core repulsion = 25686.575165 eV Total energy + Delta-G solvation = -4502.097044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98283 -39.75267 -39.10354 -38.15927 -37.64362 -37.00368 -34.74243 -34.23193 -33.63810 -31.65947 -30.62080 -28.67396 -27.48434 -26.99870 -25.69532 -24.41978 -23.93180 -21.67568 -20.61024 -19.98880 -19.70026 -19.27934 -18.59543 -17.98252 -17.62558 -17.14568 -16.78240 -16.51321 -15.70272 -15.40724 -15.28056 -14.85450 -14.75354 -14.40072 -14.27534 -14.05857 -13.44240 -13.17358 -13.09617 -12.94584 -12.62145 -12.53557 -12.19418 -11.83406 -11.59562 -11.36741 -11.15836 -11.08156 -10.93348 -10.84319 -10.65285 -10.40868 -10.36668 -10.05049 -9.84862 -9.52295 -9.40611 -9.23529 -8.80565 -8.69310 -6.86853 -5.70611 -3.10610 -0.08854 0.13283 2.14292 2.50442 2.91211 3.01269 3.06271 3.39809 3.43396 3.43780 3.45064 3.96982 4.31419 4.37117 4.47713 4.61351 4.94224 5.06621 5.20900 5.26872 5.32251 5.34672 5.47416 5.51356 5.67728 5.87742 5.97378 5.99794 6.23676 6.41889 6.65787 6.72000 6.85985 6.87366 7.04426 7.23222 7.31583 7.54175 7.65297 7.72729 8.07845 8.24409 8.30423 9.16710 9.77604 10.40618 11.34492 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002802 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.198379 B = 9991.731309 C =10560.548628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.298 6.298 3 C 0.030 3.970 4 C 0.370 3.630 5 O -0.462 6.462 6 N -0.523 5.523 7 C 0.513 3.487 8 O -0.449 6.449 9 N -0.488 5.488 10 C 0.149 3.851 11 C 0.561 3.439 12 O -0.508 6.508 13 N -0.679 5.679 14 C 0.140 3.860 15 H 0.104 0.896 16 C 0.132 3.868 17 N -0.596 5.596 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.012 4.012 21 N -0.927 5.927 22 Si 0.917 3.083 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.127 3.873 27 C 0.068 3.932 28 H 0.060 0.940 29 O -0.559 6.559 30 H 0.103 0.897 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.414 0.586 34 H 0.417 0.583 35 H 0.420 0.580 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.253 0.747 39 H 0.116 0.884 40 H 0.023 0.977 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 4.941 20.463 21.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 O -0.211 6.211 3 C -0.023 4.023 4 C 0.179 3.821 5 O -0.270 6.270 6 N -0.262 5.262 7 C 0.209 3.791 8 O -0.253 6.253 9 N -0.218 5.218 10 C 0.002 3.998 11 C 0.343 3.657 12 O -0.382 6.382 13 N -0.331 5.331 14 C 0.035 3.965 15 H 0.122 0.878 16 C 0.005 3.995 17 N -0.322 5.322 18 C -0.346 4.346 19 H 0.096 0.904 20 C -0.207 4.207 21 N -0.576 5.576 22 Si 0.748 3.252 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.002 3.998 27 C 0.007 3.993 28 H 0.078 0.922 29 O -0.365 6.365 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.275 0.725 34 H 0.277 0.723 35 H 0.258 0.742 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.134 0.866 40 H 0.041 0.959 41 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.547 4.986 20.657 21.731 hybrid contribution 1.125 -0.561 -0.777 1.478 sum -3.422 4.424 19.880 20.652 Atomic orbital electron populations 1.23044 0.77037 1.04211 1.00528 1.86023 1.20927 1.20711 1.93488 1.20525 1.01114 0.89238 0.91385 1.19619 0.90199 0.86686 0.85644 1.84715 1.44468 1.64761 1.33066 1.67322 1.15717 1.10877 1.32246 1.19671 0.92092 0.85453 0.81928 1.84772 1.25805 1.19838 1.94887 1.68034 1.14426 1.09081 1.30307 1.22141 0.93814 0.88702 0.95111 1.17499 0.80592 0.85010 0.82576 1.90857 1.41752 1.19318 1.86261 1.45747 1.59014 1.23970 1.04361 1.22299 0.99829 0.94258 0.80112 0.87810 1.21584 0.94870 0.96118 0.86928 1.44265 1.36353 1.50685 1.00915 1.19050 1.07505 1.19125 0.88897 0.90437 1.24752 0.99345 1.00040 0.96518 1.69701 1.37834 1.38900 1.11182 0.86105 0.80776 0.78885 0.79465 1.21189 1.21572 1.21163 1.22651 0.91710 0.92186 0.93292 1.23626 0.90624 0.88240 0.96795 0.92196 1.86257 1.60307 1.37045 1.52920 0.87902 0.93516 0.92918 0.72481 0.72312 0.74227 0.95186 0.95176 0.93651 0.86620 0.95915 0.77210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.46 10.55 101.05 1.07 1.53 16 2 O -0.30 -3.79 8.77 -46.77 -0.41 -4.20 16 3 C 0.03 0.37 5.81 -38.29 -0.22 0.15 16 4 C 0.37 4.03 7.86 -16.51 -0.13 3.90 16 5 O -0.46 -3.83 13.42 -30.75 -0.41 -4.24 16 6 N -0.52 -6.04 10.46 -14.65 -0.15 -6.20 16 7 C 0.51 5.97 8.69 -91.50 -0.80 5.17 16 8 O -0.45 -4.18 13.64 -18.33 -0.25 -4.43 16 9 N -0.49 -6.35 9.72 -11.31 -0.11 -6.46 16 10 C 0.15 2.07 6.79 -82.60 -0.56 1.51 16 11 C 0.56 8.98 7.81 -12.23 -0.10 8.88 16 12 O -0.51 -9.07 13.92 -16.05 -0.22 -9.29 16 13 N -0.68 -11.02 5.07 -52.90 -0.27 -11.29 16 14 C 0.14 2.55 3.15 -66.10 -0.21 2.34 16 15 H 0.10 1.87 7.62 -51.93 -0.40 1.48 16 16 C 0.13 2.90 7.00 -3.07 -0.02 2.87 16 17 N -0.60 -15.17 3.40 -169.93 -0.58 -15.75 16 18 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 19 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 20 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 21 N -0.93 -26.20 10.09 55.49 0.56 -25.64 16 22 Si 0.92 21.93 29.55 -169.99 -5.02 16.91 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C 0.13 2.93 5.63 -2.41 -0.01 2.91 16 27 C 0.07 1.21 4.31 -24.47 -0.11 1.11 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 29 O -0.56 -9.54 12.23 -35.23 -0.43 -9.97 16 30 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.59 7.58 -51.93 -0.39 0.20 16 33 H 0.41 1.32 9.06 45.56 0.41 1.73 16 34 H 0.42 1.62 9.06 45.56 0.41 2.04 16 35 H 0.42 6.64 6.95 -40.82 -0.28 6.36 16 36 H 0.03 0.68 8.03 -51.93 -0.42 0.27 16 37 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.12 2.95 5.87 -51.93 -0.30 2.64 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.38 5.19 9.12 45.56 0.42 5.60 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -35.25 355.10 -5.50 -40.75 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -2.21 Total: 10.71 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: -1.34 Total: 23.75 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.55 Total: -65.34 kcal Atomic # 8 Polarization: -30.40 SS G_CDS: -1.73 Total: -32.13 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.25 -5.50 -40.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083949789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.837 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds