Wall clock time and date at job start Tue Mar 31 2020 23:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35780 * 116.99765 * 2 1 4 4 C 1.40349 * 120.90912 * 90.00032 * 3 2 1 5 5 O 1.35552 * 120.48333 * 359.97438 * 4 3 2 6 6 N 1.32403 * 119.02650 * 179.97438 * 4 3 2 7 7 C 1.32499 * 120.97603 * 0.02562 * 6 4 3 8 8 O 1.35545 * 118.99137 * 179.97438 * 7 6 4 9 9 N 1.31849 * 122.01336 * 359.97414 * 7 6 4 10 10 C 1.33534 * 120.87110 * 359.75491 * 9 7 6 11 11 C 1.48066 * 120.53739 * 180.28703 * 10 9 7 12 12 O 1.21522 * 120.00371 * 180.23416 * 11 10 9 13 13 N 1.34783 * 119.99982 * 0.23858 * 11 10 9 14 14 C 1.46501 * 119.99904 * 179.97438 * 13 11 10 15 15 H 1.08997 * 110.64232 * 34.29336 * 14 13 11 16 16 C 1.54320 * 110.71657 * 271.15275 * 14 13 11 17 17 N 1.47022 * 107.27303 * 219.44274 * 16 14 13 18 18 C 1.36936 * 125.65493 * 178.97868 * 17 16 14 19 19 H 1.08003 * 119.99393 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00575 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99679 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00342 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47360 * 59.99360 * 22 20 18 24 24 H 1.48495 * 109.47569 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46737 * 299.99810 * 22 20 18 26 26 C 1.47435 * 108.70101 * 358.94371 * 17 16 14 27 27 C 1.55126 * 104.93910 * 24.00310 * 26 17 16 28 28 H 1.09007 * 111.15808 * 205.13264 * 27 26 17 29 29 O 1.42895 * 110.93903 * 81.21745 * 27 26 17 30 30 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00252 * 1 2 3 32 32 H 1.09001 * 109.46558 * 60.00300 * 1 2 3 33 33 H 0.96701 * 114.00079 * 90.00091 * 5 4 3 34 34 H 0.96701 * 113.99811 * 89.99892 * 8 7 6 35 35 H 0.96997 * 119.99950 * 359.97438 * 13 11 10 36 36 H 1.09000 * 109.88667 * 338.86029 * 16 14 13 37 37 H 1.09001 * 109.88469 * 100.02778 * 16 14 13 38 38 H 0.96999 * 120.00083 * 180.02562 * 21 20 18 39 39 H 1.09001 * 110.36880 * 142.96609 * 26 17 16 40 40 H 1.08996 * 110.36403 * 265.17598 * 26 17 16 41 41 H 0.96698 * 114.00043 * 67.95386 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 2.3727 1.8522 1.2042 5 8 2.0776 1.2741 2.3942 6 7 2.9739 3.0311 1.1607 7 6 3.2664 3.6051 0.0029 8 8 3.8817 4.8129 0.0053 9 7 2.9772 3.0375 -1.1515 10 6 2.3757 1.8462 -1.1976 11 6 2.0600 1.2126 -2.4981 12 8 1.5087 0.1301 -2.5287 13 7 2.3843 1.8364 -3.6480 14 6 2.0725 1.2093 -4.9347 15 1 1.1409 0.6469 -4.8723 16 6 3.2307 0.2982 -5.3929 17 7 3.3771 0.4751 -6.8450 18 6 4.3094 -0.1435 -7.6345 19 1 5.0189 -0.8294 -7.1957 20 6 4.3426 0.1110 -8.9987 21 7 3.4777 0.9465 -9.5335 22 14 5.6139 -0.7335 -10.0757 23 1 5.4367 -2.2053 -9.9895 24 1 5.4398 -0.2950 -11.4837 25 1 6.9766 -0.3709 -9.6098 26 6 2.3534 1.4284 -7.3107 27 6 1.9964 2.2744 -6.0604 28 1 0.9911 2.6884 -6.1393 29 8 2.9594 3.3094 -5.8522 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.7790 0.7051 2.7397 34 1 4.8474 4.7623 0.0060 35 1 2.8241 2.7006 -3.6236 36 1 4.1526 0.5888 -4.8892 37 1 2.9952 -0.7421 -5.1682 38 1 3.5006 1.1241 -10.4868 39 1 2.7577 2.0649 -8.0978 40 1 1.4736 0.8947 -7.6700 41 1 2.9495 3.9981 -6.5308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083949789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:19 Heat of formation + Delta-G solvation = -127.695852 kcal Electronic energy + Delta-G solvation = -30190.281264 eV Core-core repulsion = 25686.575165 eV Total energy + Delta-G solvation = -4503.706099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.89597 -41.03456 -39.98331 -39.42637 -38.64667 -37.81595 -36.37081 -35.59619 -34.69512 -33.50957 -31.53096 -30.39749 -28.95679 -28.03965 -26.97739 -26.04630 -24.86052 -22.90675 -22.24697 -21.48308 -20.71923 -20.22910 -19.42833 -19.18333 -18.84886 -18.35680 -18.22049 -17.62551 -16.90159 -16.77085 -16.49482 -16.25013 -15.93797 -15.71192 -15.67576 -15.22675 -14.71811 -14.64271 -14.38196 -14.25165 -13.93724 -13.55895 -13.37364 -13.20844 -12.95858 -12.91581 -12.71986 -12.40892 -12.26938 -12.18074 -12.03107 -11.91223 -11.87107 -11.77678 -11.54493 -10.88833 -10.70725 -10.43080 -10.32784 -10.18335 -8.89542 -7.79680 -5.22971 -1.05277 -0.70895 1.27318 1.43542 1.47872 1.50185 1.56554 1.83743 2.05870 2.14926 2.49040 2.49878 2.91104 3.23689 3.31297 3.39207 3.59988 3.66509 3.83542 3.92233 4.00509 4.28689 4.32654 4.42813 4.45980 4.54340 4.71246 4.75738 4.85485 4.89701 5.10536 5.31071 5.39045 5.47644 5.72586 6.01191 6.24098 6.26713 6.35101 6.41758 6.52126 6.85614 7.00111 7.09480 7.73886 8.36446 9.22134 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002802 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.198379 B = 9991.731309 C =10560.548628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.313 6.313 3 C 0.026 3.974 4 C 0.388 3.612 5 O -0.460 6.460 6 N -0.526 5.526 7 C 0.517 3.483 8 O -0.452 6.452 9 N -0.500 5.500 10 C 0.135 3.865 11 C 0.563 3.437 12 O -0.530 6.530 13 N -0.675 5.675 14 C 0.152 3.848 15 H 0.108 0.892 16 C 0.133 3.867 17 N -0.615 5.615 18 C -0.243 4.243 19 H 0.074 0.926 20 C -0.059 4.059 21 N -0.944 5.944 22 Si 0.980 3.020 23 H -0.281 1.281 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.127 3.873 27 C 0.089 3.911 28 H 0.097 0.903 29 O -0.564 6.564 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.437 0.563 34 H 0.438 0.562 35 H 0.423 0.577 36 H 0.020 0.980 37 H 0.018 0.982 38 H 0.250 0.750 39 H 0.091 0.909 40 H 0.004 0.996 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.708 5.659 22.148 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.226 6.226 3 C -0.026 4.026 4 C 0.195 3.805 5 O -0.271 6.271 6 N -0.265 5.265 7 C 0.213 3.787 8 O -0.259 6.259 9 N -0.231 5.231 10 C -0.010 4.010 11 C 0.347 3.653 12 O -0.405 6.405 13 N -0.326 5.326 14 C 0.046 3.954 15 H 0.126 0.874 16 C 0.006 3.994 17 N -0.342 5.342 18 C -0.372 4.372 19 H 0.092 0.908 20 C -0.252 4.252 21 N -0.594 5.594 22 Si 0.808 3.192 23 H -0.207 1.207 24 H -0.215 1.215 25 H -0.205 1.205 26 C 0.002 3.998 27 C 0.029 3.971 28 H 0.114 0.886 29 O -0.372 6.372 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.303 0.697 34 H 0.303 0.697 35 H 0.262 0.738 36 H 0.038 0.962 37 H 0.036 0.964 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.022 0.978 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.416 5.723 22.378 23.517 hybrid contribution 1.118 -0.788 -1.192 1.815 sum -3.297 4.935 21.186 22.002 Atomic orbital electron populations 1.23189 0.75937 1.05316 1.00638 1.85998 1.22076 1.20984 1.93552 1.20596 1.01241 0.89252 0.91559 1.19543 0.88686 0.86313 0.85934 1.84680 1.45679 1.65094 1.31682 1.67470 1.15922 1.11107 1.32010 1.19771 0.91674 0.85641 0.81626 1.84742 1.27802 1.18636 1.94726 1.67982 1.15052 1.08955 1.31152 1.21768 0.95445 0.89523 0.94299 1.17780 0.79734 0.84649 0.83186 1.90837 1.42615 1.20302 1.86775 1.45592 1.59329 1.23966 1.03755 1.22011 0.98261 0.93799 0.81300 0.87391 1.21620 0.95993 0.96427 0.85361 1.44523 1.36355 1.51108 1.02195 1.19352 1.08303 1.19692 0.89813 0.90839 1.25535 1.01255 1.00840 0.97549 1.69928 1.38841 1.39573 1.11038 0.85131 0.78626 0.77915 0.77499 1.20744 1.21490 1.20496 1.22543 0.90225 0.91862 0.95183 1.23361 0.92339 0.87798 0.93651 0.88576 1.86229 1.60292 1.37121 1.53575 0.86407 0.91812 0.94320 0.69720 0.69688 0.73812 0.96180 0.96417 0.94053 0.89107 0.97814 0.75339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.55 113.37 1.20 2.01 16 2 O -0.31 -7.58 8.77 -64.58 -0.57 -8.15 16 3 C 0.03 0.62 5.81 23.11 0.13 0.75 16 4 C 0.39 7.61 7.86 85.12 0.67 8.28 16 5 O -0.46 -6.34 13.42 -76.72 -1.03 -7.37 16 6 N -0.53 -11.00 10.46 -425.94 -4.46 -15.45 16 7 C 0.52 11.07 8.69 180.66 1.57 12.65 16 8 O -0.45 -7.42 13.64 -88.50 -1.21 -8.63 16 9 N -0.50 -12.38 9.72 -302.83 -2.94 -15.32 16 10 C 0.14 3.63 6.79 41.82 0.28 3.91 16 11 C 0.56 17.77 7.81 86.85 0.68 18.45 16 12 O -0.53 -18.88 13.92 16.68 0.23 -18.65 16 13 N -0.67 -21.43 5.07 -439.58 -2.23 -23.66 16 14 C 0.15 5.49 3.15 46.18 0.15 5.63 16 15 H 0.11 3.84 7.62 -2.39 -0.02 3.83 16 16 C 0.13 5.93 7.00 86.73 0.61 6.54 16 17 N -0.62 -32.02 3.40 -691.54 -2.35 -34.37 16 18 C -0.24 -13.81 10.27 84.03 0.86 -12.94 16 19 H 0.07 4.09 7.83 -2.91 -0.02 4.07 16 20 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 21 N -0.94 -54.21 10.09 21.65 0.22 -53.99 16 22 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 26 C 0.13 5.94 5.63 86.93 0.49 6.43 16 27 C 0.09 3.10 4.31 32.06 0.14 3.24 16 28 H 0.10 2.74 8.14 -2.38 -0.02 2.72 16 29 O -0.56 -18.44 12.23 -148.98 -1.82 -20.26 16 30 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.84 7.58 -2.39 -0.02 0.82 16 33 H 0.44 1.47 9.06 -74.06 -0.67 0.80 16 34 H 0.44 2.40 9.06 -74.06 -0.67 1.73 16 35 H 0.42 12.94 6.95 -92.71 -0.64 12.30 16 36 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 39 H 0.09 4.72 5.87 -2.39 -0.01 4.70 16 40 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.40 10.17 9.12 -74.06 -0.68 9.50 16 Total: -1.00 -76.06 355.10 -8.38 -84.44 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -1.50 Total: 21.88 kcal Atomic # 6 Polarization: 44.88 SS G_CDS: 7.24 Total: 52.12 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -11.76 Total: -142.79 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -4.39 Total: -63.06 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.06 -8.38 -84.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083949789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.254 kcal (2) G-P(sol) polarization free energy of solvation -76.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds