Wall clock time and date at job start Tue Mar 31 2020 23:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99567 * 2 1 4 4 H 1.48500 * 109.47258 * 270.00226 * 3 2 1 5 5 H 1.48499 * 109.47467 * 30.00091 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00534 * 3 2 1 7 7 C 1.38813 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 187.39235 * 7 2 1 9 9 N 1.36934 * 119.99722 * 7.39069 * 7 2 1 10 10 C 1.45526 * 117.17558 * 32.42333 * 9 7 2 11 11 C 1.53279 * 109.48208 * 149.04630 * 10 9 7 12 12 N 1.46761 * 107.38394 * 52.78003 * 11 10 9 13 13 C 1.34776 * 119.86218 * 122.46130 * 12 11 10 14 14 O 1.21614 * 120.00266 * 162.39209 * 13 12 11 15 15 C 1.47100 * 119.99973 * 342.39465 * 13 12 11 16 16 C 1.32990 * 120.00438 * 173.75519 * 15 13 12 17 17 C 1.50699 * 120.00369 * 180.02562 * 16 15 13 18 18 C 1.52999 * 117.50031 * 188.74076 * 17 16 15 19 19 C 1.52997 * 117.50430 * 120.07898 * 17 16 15 20 20 C 1.45497 * 120.28329 * 302.43967 * 12 11 10 21 21 H 1.09004 * 106.38673 * 273.60640 * 20 12 11 22 22 C 1.54531 * 109.48956 * 158.45428 * 20 12 11 23 23 S 1.84687 * 102.40585 * 257.83763 * 22 20 12 24 24 O 1.42098 * 110.06114 * 211.05871 * 23 22 20 25 25 O 1.42104 * 109.85525 * 76.38760 * 23 22 20 26 26 C 1.84031 * 93.61040 * 323.74656 * 23 22 20 27 27 C 1.44231 * 117.17713 * 212.42570 * 9 7 2 28 28 H 1.09000 * 105.23270 * 301.86783 * 27 9 7 29 29 H 0.96996 * 120.00719 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47724 * 29.04606 * 10 9 7 31 31 H 1.08996 * 109.47052 * 269.04615 * 10 9 7 32 32 H 1.08992 * 109.87898 * 293.30586 * 11 10 9 33 33 H 1.09000 * 109.93419 * 172.28054 * 11 10 9 34 34 H 1.08009 * 119.99784 * 353.74916 * 15 13 12 35 35 H 1.08003 * 119.99648 * 359.97438 * 16 15 13 36 36 H 1.09003 * 115.54852 * 334.41060 * 17 16 15 37 37 H 1.09004 * 117.49404 * 0.02562 * 18 17 16 38 38 H 1.09002 * 117.49962 * 145.01348 * 18 17 16 39 39 H 1.08998 * 117.50342 * 214.97916 * 19 17 16 40 40 H 1.09007 * 117.49434 * 0.02562 * 19 17 16 41 41 H 1.08994 * 110.82909 * 16.07695 * 22 20 12 42 42 H 1.09004 * 110.82345 * 139.44089 * 22 20 12 43 43 H 1.08996 * 110.82615 * 278.03500 * 26 23 22 44 44 H 1.08998 * 110.82466 * 154.66854 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3343 -2.3830 -0.1536 10 6 0.1409 -2.3626 -0.9863 11 6 -0.0307 -3.7251 -1.6671 12 7 0.0144 -4.7490 -0.6166 13 6 -1.0224 -5.5957 -0.4598 14 8 -0.8758 -6.6268 0.1682 15 6 -2.3312 -5.2728 -1.0484 16 6 -3.3191 -6.1619 -1.0016 17 6 -4.6598 -5.8313 -1.6051 18 6 -5.8117 -6.8035 -1.3428 19 6 -5.1698 -6.7334 -2.7306 20 6 1.1738 -4.8542 0.2561 21 1 1.8903 -5.4931 -0.2601 22 6 0.7752 -5.5869 1.5569 23 16 0.6106 -4.1964 2.7612 24 8 0.9524 -4.6396 4.0673 25 8 -0.6098 -3.5042 2.5353 26 6 2.0111 -3.2483 2.0356 27 6 1.8665 -3.5394 0.5244 28 1 2.8825 -3.6510 0.1459 29 1 -0.4851 0.8399 0.0004 30 1 0.2409 -1.5872 -1.7458 31 1 -0.7310 -2.1538 -0.3665 32 1 0.7785 -3.8884 -2.3787 33 1 -0.9905 -3.7649 -2.1823 34 1 -2.4900 -4.3134 -1.5186 35 1 -3.1602 -7.1213 -0.5317 36 1 -4.9004 -4.7697 -1.6628 37 1 -5.5999 -7.6821 -0.7334 38 1 -6.8103 -6.3816 -1.2283 39 1 -5.7463 -6.2655 -3.5287 40 1 -4.5357 -7.5664 -3.0344 41 1 -0.1747 -6.1070 1.4333 42 1 1.5573 -6.2803 1.8664 43 1 2.9651 -3.6175 2.4118 44 1 1.9032 -2.1826 2.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094615697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:58 Heat of formation + Delta-G solvation = 15.568443 kcal Electronic energy + Delta-G solvation = -29187.821633 eV Core-core repulsion = 25236.621155 eV Total energy + Delta-G solvation = -3951.200478 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.53561 -38.01449 -37.44653 -36.37237 -35.36222 -34.48862 -34.00092 -32.27639 -31.14410 -28.55397 -27.73466 -25.73153 -24.40315 -23.29735 -22.58317 -22.19604 -20.66463 -19.29014 -18.54477 -18.36362 -17.31578 -16.66466 -16.52202 -16.27503 -15.87694 -15.46188 -15.16802 -14.75295 -14.56235 -14.36417 -14.26585 -13.69061 -13.47786 -13.25618 -12.88890 -12.62937 -12.35307 -12.01287 -11.85288 -11.81266 -11.58444 -11.53129 -11.43514 -11.39635 -11.29775 -11.11829 -10.97473 -10.87840 -10.62858 -10.57736 -10.27749 -10.14042 -10.02068 -9.65093 -9.19693 -8.92484 -8.64529 -8.22973 -6.83702 -5.93845 -3.55654 0.68078 1.33112 3.05354 3.10605 3.24435 3.25832 3.34372 3.35048 3.77125 4.09377 4.27620 4.37576 4.53424 4.68099 4.74149 4.78222 4.89077 4.96586 5.11821 5.13822 5.28127 5.30877 5.36699 5.41159 5.57146 5.64999 5.65895 5.79478 5.88010 5.90676 5.92019 5.95445 6.06497 6.08232 6.35074 6.38697 6.47699 6.61845 6.83023 7.14400 7.57078 7.62851 7.67412 8.26028 8.29209 9.04495 9.63503 10.03984 11.06755 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004526 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.096602 B = 6184.953631 C = 7616.433560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.019 3.981 3 Si 0.906 3.094 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.281 4.281 8 H 0.070 0.930 9 N -0.577 5.577 10 C 0.168 3.832 11 C 0.076 3.924 12 N -0.589 5.589 13 C 0.550 3.450 14 O -0.539 6.539 15 C -0.203 4.203 16 C -0.043 4.043 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.167 4.167 20 C 0.162 3.838 21 H 0.079 0.921 22 C -0.636 4.636 23 S 2.343 3.657 24 O -0.963 6.963 25 O -0.917 6.917 26 C -0.579 4.579 27 C 0.187 3.813 28 H 0.052 0.948 29 H 0.259 0.741 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.202 0.798 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -10.933 -5.631 13.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.182 4.182 3 Si 0.735 3.265 4 H -0.211 1.211 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.410 4.410 8 H 0.088 0.912 9 N -0.299 5.299 10 C 0.042 3.958 11 C -0.046 4.046 12 N -0.319 5.319 13 C 0.343 3.657 14 O -0.423 6.423 15 C -0.224 4.224 16 C -0.063 4.063 17 C -0.155 4.155 18 C -0.209 4.209 19 C -0.204 4.204 20 C 0.056 3.944 21 H 0.097 0.903 22 C -0.765 4.765 23 S 2.528 3.472 24 O -0.960 6.960 25 O -0.914 6.914 26 C -0.713 4.713 27 C 0.076 3.924 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.106 0.894 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.217 0.783 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.430 -11.119 -4.561 13.188 hybrid contribution 1.177 1.064 -0.493 1.662 sum -4.253 -10.055 -5.054 12.030 Atomic orbital electron populations 1.70012 1.05233 1.26080 1.51673 1.25349 0.95442 0.98655 0.98798 0.86259 0.79163 0.83236 0.77882 1.21088 1.21445 1.20202 1.19115 0.90771 0.83081 1.48061 0.91241 1.43098 1.29732 1.05101 1.51931 1.21057 0.90393 0.90520 0.93808 1.22760 1.02203 0.90263 0.89418 1.47382 1.17689 1.33928 1.32873 1.18566 0.84540 0.82445 0.80128 1.90249 1.84585 1.25001 1.42484 1.22676 0.93034 1.01795 1.04855 1.22997 0.91678 0.98754 0.92888 1.21329 0.92756 0.98026 1.03365 1.23014 0.97132 1.01477 0.99294 1.22979 1.03379 1.02093 0.91940 1.20678 0.87881 0.95837 0.89978 0.90325 1.31885 1.17485 1.16887 1.10196 1.10426 0.79502 0.80111 0.77111 1.93524 1.85334 1.81301 1.35822 1.93651 1.40777 1.70595 1.86369 1.31089 1.15580 1.15877 1.08793 1.19948 0.97566 0.86364 0.88554 0.93079 0.93060 0.90853 0.92225 0.91175 0.89445 0.84703 0.85616 0.86520 0.88388 0.88330 0.88262 0.88473 0.78321 0.84636 0.86073 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.74 10.76 55.49 0.60 -23.14 16 2 C 0.02 0.49 5.05 -17.43 -0.09 0.40 16 3 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.28 -6.86 7.84 -15.06 -0.12 -6.98 16 8 H 0.07 1.67 7.84 -52.49 -0.41 1.26 16 9 N -0.58 -12.79 3.01 -168.11 -0.51 -13.30 16 10 C 0.17 3.55 4.87 -4.42 -0.02 3.53 16 11 C 0.08 1.24 6.45 -3.76 -0.02 1.22 16 12 N -0.59 -10.08 2.96 -168.08 -0.50 -10.57 16 13 C 0.55 9.28 6.97 -12.67 -0.09 9.19 16 14 O -0.54 -9.74 12.82 5.26 0.07 -9.68 16 15 C -0.20 -2.87 8.76 -37.81 -0.33 -3.21 16 16 C -0.04 -0.53 9.24 -36.13 -0.33 -0.87 16 17 C -0.14 -1.35 6.00 -91.77 -0.55 -1.90 16 18 C -0.17 -1.42 10.24 -26.69 -0.27 -1.69 16 19 C -0.17 -1.34 10.24 -26.70 -0.27 -1.61 16 20 C 0.16 2.75 3.14 -68.67 -0.22 2.53 16 21 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 22 C -0.64 -10.44 6.46 37.96 0.25 -10.20 16 23 S 2.34 44.85 6.12 -107.50 -0.66 44.19 16 24 O -0.96 -19.99 18.17 -57.66 -1.05 -21.04 16 25 O -0.92 -21.38 18.17 -57.66 -1.05 -22.43 16 26 C -0.58 -10.54 6.87 37.99 0.26 -10.28 16 27 C 0.19 3.52 2.75 -69.31 -0.19 3.33 16 28 H 0.05 0.91 8.05 -51.93 -0.42 0.49 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.07 1.65 7.19 -51.93 -0.37 1.28 16 31 H 0.06 1.47 7.34 -51.93 -0.38 1.09 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.19 5.58 -51.93 -0.29 0.90 16 34 H 0.14 1.76 6.35 -52.48 -0.33 1.42 16 35 H 0.13 1.57 7.51 -52.48 -0.39 1.17 16 36 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.20 3.57 3.78 -57.83 -0.22 3.35 16 42 H 0.14 1.80 8.14 -51.93 -0.42 1.37 16 43 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 44 H 0.15 3.18 6.90 -51.93 -0.36 2.82 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -32.66 359.84 -10.81 -43.47 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -6.12 Total: 8.49 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.00 Total: -16.54 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -0.41 Total: -47.01 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -2.03 Total: -53.14 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 16 Polarization: 44.85 SS G_CDS: -0.66 Total: 44.19 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.66 -10.81 -43.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094615697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.036 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds