Wall clock time and date at job start Tue Mar 31 2020 23:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99567 * 2 1 4 4 H 1.48500 * 109.47258 * 270.00226 * 3 2 1 5 5 H 1.48499 * 109.47467 * 30.00091 * 3 2 1 6 6 H 1.48497 * 109.47118 * 150.00534 * 3 2 1 7 7 C 1.38813 * 120.00630 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 187.39235 * 7 2 1 9 9 N 1.36934 * 119.99722 * 7.39069 * 7 2 1 10 10 C 1.45526 * 117.17558 * 32.42333 * 9 7 2 11 11 C 1.53279 * 109.48208 * 149.04630 * 10 9 7 12 12 N 1.46761 * 107.38394 * 52.78003 * 11 10 9 13 13 C 1.34776 * 119.86218 * 122.46130 * 12 11 10 14 14 O 1.21614 * 120.00266 * 162.39209 * 13 12 11 15 15 C 1.47100 * 119.99973 * 342.39465 * 13 12 11 16 16 C 1.32990 * 120.00438 * 173.75519 * 15 13 12 17 17 C 1.50699 * 120.00369 * 180.02562 * 16 15 13 18 18 C 1.52999 * 117.50031 * 188.74076 * 17 16 15 19 19 C 1.52997 * 117.50430 * 120.07898 * 17 16 15 20 20 C 1.45497 * 120.28329 * 302.43967 * 12 11 10 21 21 H 1.09004 * 106.38673 * 273.60640 * 20 12 11 22 22 C 1.54531 * 109.48956 * 158.45428 * 20 12 11 23 23 S 1.84687 * 102.40585 * 257.83763 * 22 20 12 24 24 O 1.42098 * 110.06114 * 211.05871 * 23 22 20 25 25 O 1.42104 * 109.85525 * 76.38760 * 23 22 20 26 26 C 1.84031 * 93.61040 * 323.74656 * 23 22 20 27 27 C 1.44231 * 117.17713 * 212.42570 * 9 7 2 28 28 H 1.09000 * 105.23270 * 301.86783 * 27 9 7 29 29 H 0.96996 * 120.00719 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47724 * 29.04606 * 10 9 7 31 31 H 1.08996 * 109.47052 * 269.04615 * 10 9 7 32 32 H 1.08992 * 109.87898 * 293.30586 * 11 10 9 33 33 H 1.09000 * 109.93419 * 172.28054 * 11 10 9 34 34 H 1.08009 * 119.99784 * 353.74916 * 15 13 12 35 35 H 1.08003 * 119.99648 * 359.97438 * 16 15 13 36 36 H 1.09003 * 115.54852 * 334.41060 * 17 16 15 37 37 H 1.09004 * 117.49404 * 0.02562 * 18 17 16 38 38 H 1.09002 * 117.49962 * 145.01348 * 18 17 16 39 39 H 1.08998 * 117.50342 * 214.97916 * 19 17 16 40 40 H 1.09007 * 117.49434 * 0.02562 * 19 17 16 41 41 H 1.08994 * 110.82909 * 16.07695 * 22 20 12 42 42 H 1.09004 * 110.82345 * 139.44089 * 22 20 12 43 43 H 1.08996 * 110.82615 * 278.03500 * 26 23 22 44 44 H 1.08998 * 110.82466 * 154.66854 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0836 -1.2059 0.1198 9 7 1.3343 -2.3830 -0.1536 10 6 0.1409 -2.3626 -0.9863 11 6 -0.0307 -3.7251 -1.6671 12 7 0.0144 -4.7490 -0.6166 13 6 -1.0224 -5.5957 -0.4598 14 8 -0.8758 -6.6268 0.1682 15 6 -2.3312 -5.2728 -1.0484 16 6 -3.3191 -6.1619 -1.0016 17 6 -4.6598 -5.8313 -1.6051 18 6 -5.8117 -6.8035 -1.3428 19 6 -5.1698 -6.7334 -2.7306 20 6 1.1738 -4.8542 0.2561 21 1 1.8903 -5.4931 -0.2601 22 6 0.7752 -5.5869 1.5569 23 16 0.6106 -4.1964 2.7612 24 8 0.9524 -4.6396 4.0673 25 8 -0.6098 -3.5042 2.5353 26 6 2.0111 -3.2483 2.0356 27 6 1.8665 -3.5394 0.5244 28 1 2.8825 -3.6510 0.1459 29 1 -0.4851 0.8399 0.0004 30 1 0.2409 -1.5872 -1.7458 31 1 -0.7310 -2.1538 -0.3665 32 1 0.7785 -3.8884 -2.3787 33 1 -0.9905 -3.7649 -2.1823 34 1 -2.4900 -4.3134 -1.5186 35 1 -3.1602 -7.1213 -0.5317 36 1 -4.9004 -4.7697 -1.6628 37 1 -5.5999 -7.6821 -0.7334 38 1 -6.8103 -6.3816 -1.2283 39 1 -5.7463 -6.2655 -3.5287 40 1 -4.5357 -7.5664 -3.0344 41 1 -0.1747 -6.1070 1.4333 42 1 1.5573 -6.2803 1.8664 43 1 2.9651 -3.6175 2.4118 44 1 1.9032 -2.1826 2.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094615697.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:57 Heat of formation + Delta-G solvation = -7.531988 kcal Electronic energy + Delta-G solvation = -29188.823343 eV Core-core repulsion = 25236.621155 eV Total energy + Delta-G solvation = -3952.202188 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.85971 -39.30719 -38.38382 -37.98978 -36.99383 -36.02941 -35.41861 -33.42182 -32.84932 -29.96751 -29.32871 -27.17411 -25.80038 -24.69337 -23.67983 -23.20643 -21.76473 -20.44117 -20.09533 -19.76699 -18.82370 -18.16877 -17.96360 -17.68803 -17.16041 -16.83520 -16.46028 -16.31944 -15.97223 -15.71658 -15.55064 -15.19118 -14.93517 -14.59929 -14.35368 -13.79552 -13.61940 -13.52939 -13.20688 -13.15839 -13.05095 -13.03022 -12.78945 -12.70429 -12.59114 -12.50877 -12.32668 -12.25773 -12.04711 -11.89289 -11.77314 -11.71923 -11.32423 -11.12659 -10.53816 -10.39442 -10.03647 -9.55445 -8.64513 -7.82675 -5.46942 -0.82021 0.24918 1.47682 1.50340 1.57437 1.59226 1.84577 2.05259 2.48442 2.64486 3.03938 3.05461 3.19505 3.30159 3.46951 3.55531 3.68587 3.95074 3.97343 3.99926 4.07085 4.17598 4.19210 4.31139 4.43274 4.44486 4.51187 4.60082 4.70994 4.76673 4.81838 4.93676 5.03160 5.06979 5.15757 5.28158 5.29152 5.35520 5.49500 5.62498 5.71226 5.85785 6.30489 6.40876 6.97881 7.18048 7.87931 8.19254 9.14885 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.004526 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.096602 B = 6184.953631 C = 7616.433560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.033 4.033 3 Si 0.961 3.039 4 H -0.281 1.281 5 H -0.302 1.302 6 H -0.268 1.268 7 C -0.276 4.276 8 H 0.076 0.924 9 N -0.590 5.590 10 C 0.176 3.824 11 C 0.090 3.910 12 N -0.596 5.596 13 C 0.545 3.455 14 O -0.555 6.555 15 C -0.233 4.233 16 C -0.018 4.018 17 C -0.160 4.160 18 C -0.167 4.167 19 C -0.152 4.152 20 C 0.154 3.846 21 H 0.114 0.886 22 C -0.607 4.607 23 S 2.332 3.668 24 O -0.985 6.985 25 O -0.972 6.972 26 C -0.570 4.570 27 C 0.177 3.823 28 H 0.077 0.923 29 H 0.250 0.750 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.195 0.805 42 H 0.177 0.823 43 H 0.164 0.836 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -13.172 -6.991 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.230 4.230 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.406 4.406 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.050 3.950 11 C -0.032 4.032 12 N -0.326 5.326 13 C 0.340 3.660 14 O -0.441 6.441 15 C -0.254 4.254 16 C -0.038 4.038 17 C -0.178 4.178 18 C -0.204 4.204 19 C -0.189 4.189 20 C 0.048 3.952 21 H 0.132 0.868 22 C -0.738 4.738 23 S 2.522 3.478 24 O -0.982 6.982 25 O -0.969 6.969 26 C -0.705 4.705 27 C 0.067 3.933 28 H 0.094 0.906 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.135 0.865 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.210 0.790 42 H 0.195 0.805 43 H 0.182 0.818 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.508 -13.360 -5.894 15.282 hybrid contribution 0.879 1.640 -0.066 1.862 sum -3.629 -11.719 -5.960 13.639 Atomic orbital electron populations 1.70206 1.06525 1.25857 1.54018 1.25983 0.95979 1.01390 0.99682 0.85385 0.78120 0.79886 0.77714 1.20712 1.22887 1.19254 1.19413 0.91180 0.84044 1.45952 0.90659 1.43292 1.29544 1.05524 1.52917 1.20722 0.88564 0.92951 0.92719 1.22627 1.04452 0.87048 0.89091 1.47462 1.17999 1.34015 1.33126 1.18952 0.85099 0.82153 0.79810 1.90225 1.84844 1.25718 1.43286 1.22629 0.92596 1.02861 1.07300 1.23208 0.92197 0.97861 0.90538 1.21374 0.92171 0.98717 1.05560 1.23137 0.96965 1.00752 0.99540 1.23083 1.02662 1.01159 0.91964 1.20828 0.88743 0.95156 0.90458 0.86825 1.31759 1.18793 1.15208 1.08069 1.10536 0.78866 0.80949 0.77430 1.93482 1.85319 1.81695 1.37710 1.93584 1.43613 1.72610 1.87070 1.31029 1.17035 1.13965 1.08484 1.20208 0.98663 0.86111 0.88342 0.90586 0.94017 0.93085 0.96698 0.89112 0.87010 0.84182 0.85819 0.86471 0.88112 0.87060 0.86674 0.88072 0.79009 0.80535 0.81821 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.57 10.76 21.65 0.23 -51.34 16 2 C -0.03 -1.69 5.05 84.86 0.43 -1.26 16 3 Si 0.96 42.17 29.56 68.60 2.03 44.20 16 4 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.28 -13.49 7.84 84.03 0.66 -12.83 16 8 H 0.08 3.53 7.84 -2.91 -0.02 3.51 16 9 N -0.59 -26.06 3.01 -685.77 -2.06 -28.12 16 10 C 0.18 7.62 4.87 86.66 0.42 8.04 16 11 C 0.09 2.84 6.45 86.42 0.56 3.40 16 12 N -0.60 -19.42 2.96 -803.95 -2.38 -21.80 16 13 C 0.55 17.74 6.97 86.57 0.60 18.34 16 14 O -0.56 -19.16 12.82 -4.08 -0.05 -19.21 16 15 C -0.23 -6.46 8.76 23.43 0.21 -6.25 16 16 C -0.02 -0.43 9.24 24.52 0.23 -0.20 16 17 C -0.16 -2.91 6.00 -11.54 -0.07 -2.98 16 18 C -0.17 -2.38 10.24 30.62 0.31 -2.07 16 19 C -0.15 -2.04 10.24 30.62 0.31 -1.73 16 20 C 0.15 4.78 3.14 45.05 0.14 4.92 16 21 H 0.11 2.85 8.09 -2.39 -0.02 2.83 16 22 C -0.61 -18.39 6.46 72.50 0.47 -17.93 16 23 S 2.33 88.92 6.12 -56.49 -0.35 88.57 16 24 O -0.99 -40.62 18.17 -127.54 -2.32 -42.93 16 25 O -0.97 -47.24 18.17 -127.54 -2.32 -49.56 16 26 C -0.57 -20.05 6.87 72.52 0.50 -19.55 16 27 C 0.18 6.30 2.75 45.30 0.12 6.43 16 28 H 0.08 2.41 8.05 -2.39 -0.02 2.39 16 29 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 30 H 0.05 2.38 7.19 -2.39 -0.02 2.37 16 31 H 0.01 0.78 7.34 -2.39 -0.02 0.76 16 32 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.11 2.94 5.58 -2.39 -0.01 2.92 16 34 H 0.14 3.63 6.35 -2.91 -0.02 3.61 16 35 H 0.12 2.93 7.51 -2.91 -0.02 2.91 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.19 6.55 3.78 -95.86 -0.36 6.19 16 42 H 0.18 3.88 8.14 -2.38 -0.02 3.86 16 43 H 0.16 4.24 8.14 -2.39 -0.02 4.22 16 44 H 0.12 5.18 6.90 -2.39 -0.02 5.17 16 Total: -1.00 -73.59 359.84 -1.65 -75.24 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.67 Total: 28.59 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.89 Total: -23.65 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -4.21 Total: -101.26 kcal Atomic # 8 Polarization: -107.01 SS G_CDS: -4.69 Total: -111.70 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 88.92 SS G_CDS: -0.35 Total: 88.57 kcal Total: -73.59 -1.65 -75.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094615697.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.713 kcal (2) G-P(sol) polarization free energy of solvation -73.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds