Wall clock time and date at job start Tue Mar 31 2020 23:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00141 * 2 1 4 4 H 1.48497 * 109.46789 * 269.99962 * 3 2 1 5 5 H 1.48498 * 109.46807 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.46922 * 149.99967 * 3 2 1 7 7 C 1.38811 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00025 * 187.64506 * 7 2 1 9 9 N 1.36933 * 120.00125 * 7.65707 * 7 2 1 10 10 C 1.44366 * 116.72228 * 32.80868 * 9 7 2 11 11 C 1.51861 * 114.40257 * 157.68639 * 10 9 7 12 12 N 1.46470 * 110.96285 * 28.71432 * 11 10 9 13 13 C 1.34775 * 120.91625 * 128.05636 * 12 11 10 14 14 O 1.21618 * 119.99766 * 186.98643 * 13 12 11 15 15 C 1.47095 * 120.00017 * 6.98368 * 13 12 11 16 16 C 1.32995 * 119.99837 * 180.18219 * 15 13 12 17 17 C 1.50705 * 120.00313 * 351.09396 * 16 15 13 18 18 C 1.52991 * 117.50321 * 180.30997 * 17 16 15 19 19 C 1.52994 * 117.49530 * 111.64812 * 17 16 15 20 20 C 1.46864 * 118.16322 * 308.32479 * 12 11 10 21 21 H 1.09001 * 109.84320 * 300.37846 * 20 12 11 22 22 C 1.53835 * 109.42545 * 179.90938 * 20 12 11 23 23 S 1.82872 * 105.04056 * 267.35795 * 22 20 12 24 24 O 1.42102 * 109.34807 * 245.34125 * 23 22 20 25 25 O 1.42098 * 109.47132 * 112.18565 * 23 22 20 26 26 C 1.83205 * 97.05152 * 358.74455 * 23 22 20 27 27 C 1.45106 * 116.72349 * 212.79441 * 9 7 2 28 28 H 1.08993 * 109.80303 * 332.49029 * 27 9 7 29 29 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.49714 * 36.41688 * 10 9 7 31 31 H 1.08997 * 108.49914 * 278.96508 * 10 9 7 32 32 H 1.08998 * 109.17903 * 268.32938 * 11 10 9 33 33 H 1.09001 * 109.13506 * 149.06862 * 11 10 9 34 34 H 1.07994 * 120.00429 * 0.18238 * 15 13 12 35 35 H 1.08002 * 119.99958 * 170.82087 * 16 15 13 36 36 H 1.08998 * 115.54858 * 325.98787 * 17 16 15 37 37 H 1.08998 * 117.49727 * 0.02562 * 18 17 16 38 38 H 1.08998 * 117.50375 * 145.01815 * 18 17 16 39 39 H 1.09002 * 117.49771 * 214.98131 * 19 17 16 40 40 H 1.09003 * 117.50502 * 0.02562 * 19 17 16 41 41 H 1.09002 * 110.40167 * 148.47767 * 22 20 12 42 42 H 1.08997 * 110.46921 * 26.27056 * 22 20 12 43 43 H 1.09004 * 110.72876 * 218.84187 * 26 23 22 44 44 H 1.08999 * 110.87873 * 95.62273 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0830 -1.2063 0.1250 9 7 1.3347 -2.3828 -0.1569 10 6 0.1607 -2.3520 -0.9965 11 6 -0.2361 -3.7011 -1.5699 12 7 0.1774 -4.7900 -0.6819 13 6 -0.7025 -5.7293 -0.2819 14 8 -0.3769 -6.5511 0.5534 15 6 -2.0566 -5.7605 -0.8557 16 6 -2.9260 -6.6852 -0.4583 17 6 -2.4699 -7.8188 0.4238 18 6 -3.5160 -8.8543 0.8410 19 6 -2.9871 -7.8455 1.8635 20 6 1.5757 -4.8266 -0.2346 21 1 2.2384 -4.8985 -1.0971 22 6 1.7873 -6.0422 0.6842 23 16 1.5085 -5.4112 2.3778 24 8 2.7226 -5.4827 3.1127 25 8 0.3243 -5.9892 2.9096 26 6 1.1795 -3.6688 1.9173 27 6 1.8712 -3.5390 0.5366 28 1 2.9464 -3.4226 0.6716 29 1 -0.4850 0.8401 0.0004 30 1 0.3445 -1.6656 -1.8231 31 1 -0.6735 -1.9664 -0.4105 32 1 0.2400 -3.8311 -2.5418 33 1 -1.3185 -3.7319 -1.6945 34 1 -2.3448 -5.0326 -1.5995 35 1 -3.9598 -6.6213 -0.7642 36 1 -1.4542 -8.1725 0.2473 37 1 -4.5341 -8.7160 0.4770 38 1 -3.1886 -9.8893 0.9391 39 1 -2.3116 -8.2173 2.6340 40 1 -3.6574 -7.0435 2.1726 41 1 2.8045 -6.4212 0.5848 42 1 1.0679 -6.8268 0.4501 43 1 1.6292 -2.9873 2.6395 44 1 0.1085 -3.4853 1.8310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094615698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:02 Heat of formation + Delta-G solvation = 30.339123 kcal Electronic energy + Delta-G solvation = -29805.889866 eV Core-core repulsion = 25855.329892 eV Total energy + Delta-G solvation = -3950.559974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67528 -38.08317 -36.92879 -36.27376 -35.30663 -34.40894 -34.04818 -32.14272 -31.11795 -28.74736 -27.99336 -25.31963 -24.15107 -23.41273 -22.25338 -22.14810 -21.24633 -19.47022 -18.37509 -18.21028 -17.30272 -16.58657 -16.30093 -16.21641 -15.51333 -15.19052 -15.07284 -14.89173 -14.48039 -14.35555 -13.93729 -13.61353 -13.59244 -13.22243 -13.04174 -12.83488 -12.56646 -12.29972 -11.73884 -11.54498 -11.44734 -11.39712 -11.32394 -11.28046 -11.22153 -10.97976 -10.89568 -10.73153 -10.54266 -10.41022 -10.27134 -10.15732 -9.90170 -9.61994 -9.05805 -8.73906 -8.58052 -8.24597 -6.90550 -5.91046 -3.58023 0.76232 1.36170 3.08066 3.20968 3.26138 3.32515 3.33448 3.35003 4.08408 4.15793 4.30033 4.58116 4.67035 4.76839 4.86073 5.03586 5.08542 5.17089 5.18942 5.23189 5.32010 5.38275 5.42797 5.55666 5.58043 5.65804 5.68648 5.83270 5.86759 6.03331 6.06749 6.07626 6.24629 6.26245 6.33046 6.43567 6.55849 6.62220 6.81722 7.07780 7.49603 7.63355 7.66843 8.27133 8.37362 9.03459 9.61192 9.98570 11.03437 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.004593 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.583330 B = 6094.887611 C = 7207.282362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.017 3.983 3 Si 0.908 3.092 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.279 4.279 8 H 0.071 0.929 9 N -0.566 5.566 10 C 0.160 3.840 11 C 0.087 3.913 12 N -0.592 5.592 13 C 0.544 3.456 14 O -0.519 6.519 15 C -0.219 4.219 16 C -0.031 4.031 17 C -0.126 4.126 18 C -0.193 4.193 19 C -0.147 4.147 20 C 0.151 3.849 21 H 0.098 0.902 22 C -0.652 4.652 23 S 2.376 3.624 24 O -0.968 6.968 25 O -0.932 6.932 26 C -0.588 4.588 27 C 0.181 3.819 28 H 0.087 0.913 29 H 0.257 0.743 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.134 0.866 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.118 0.882 42 H 0.222 0.778 43 H 0.127 0.873 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 -12.085 -4.588 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.183 4.183 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.409 4.409 8 H 0.088 0.912 9 N -0.287 5.287 10 C 0.034 3.966 11 C -0.036 4.036 12 N -0.323 5.323 13 C 0.337 3.663 14 O -0.402 6.402 15 C -0.239 4.239 16 C -0.051 4.051 17 C -0.143 4.143 18 C -0.230 4.230 19 C -0.184 4.184 20 C 0.046 3.954 21 H 0.116 0.884 22 C -0.780 4.780 23 S 2.561 3.439 24 O -0.965 6.965 25 O -0.928 6.928 26 C -0.723 4.723 27 C 0.069 3.931 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.137 0.863 42 H 0.237 0.763 43 H 0.146 0.854 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.756 -12.811 -3.319 14.063 hybrid contribution 0.415 1.774 -0.834 2.003 sum -4.341 -11.037 -4.152 12.566 Atomic orbital electron populations 1.69961 1.05314 1.25782 1.53068 1.25290 0.95443 0.98637 0.98969 0.86205 0.79190 0.83050 0.77812 1.21181 1.21512 1.20153 1.19307 0.90851 0.83494 1.47248 0.91167 1.42675 1.29913 1.04787 1.51312 1.20555 0.91416 0.90026 0.94553 1.22298 1.00486 0.88109 0.92682 1.47633 1.09271 1.26579 1.48824 1.18734 0.85490 0.80545 0.81507 1.90243 1.75104 1.41652 1.33209 1.22676 0.94222 1.02680 1.04340 1.23121 0.97833 0.91937 0.92189 1.21543 0.99453 0.96547 0.96788 1.23091 0.98532 0.95841 1.05566 1.22780 1.02715 1.00877 0.91991 1.21543 0.82849 0.92839 0.98216 0.88376 1.32306 1.13587 1.11075 1.21054 1.09268 0.75329 0.80628 0.78695 1.93531 1.46782 1.86723 1.69470 1.93555 1.46965 1.75754 1.76572 1.31312 1.11098 1.20031 1.09812 1.20983 0.97579 0.87655 0.86913 0.89520 0.93303 0.92446 0.91497 0.92291 0.89716 0.84990 0.85814 0.84866 0.89282 0.88951 0.88153 0.89181 0.86348 0.76347 0.85424 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.47 10.60 55.49 0.59 -22.89 16 2 C 0.02 0.43 5.09 -17.43 -0.09 0.34 16 3 Si 0.91 20.20 29.56 -169.99 -5.03 15.18 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.28 -6.86 9.19 -15.06 -0.14 -7.00 16 8 H 0.07 1.70 7.74 -52.49 -0.41 1.30 16 9 N -0.57 -12.34 2.77 -167.86 -0.47 -12.81 16 10 C 0.16 3.25 4.93 -5.76 -0.03 3.22 16 11 C 0.09 1.33 6.39 -4.64 -0.03 1.30 16 12 N -0.59 -9.16 2.80 -167.45 -0.47 -9.63 16 13 C 0.54 8.25 7.46 -12.67 -0.09 8.15 16 14 O -0.52 -8.49 6.65 -16.33 -0.11 -8.60 16 15 C -0.22 -2.72 9.27 -37.81 -0.35 -3.07 16 16 C -0.03 -0.35 9.74 -36.12 -0.35 -0.70 16 17 C -0.13 -1.56 4.31 -91.78 -0.40 -1.96 16 18 C -0.19 -1.98 10.24 -26.70 -0.27 -2.25 16 19 C -0.15 -1.87 10.24 -26.70 -0.27 -2.14 16 20 C 0.15 2.38 3.36 -67.31 -0.23 2.15 16 21 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 22 C -0.65 -9.78 6.10 37.59 0.23 -9.55 16 23 S 2.38 42.66 5.82 -107.50 -0.63 42.03 16 24 O -0.97 -19.73 18.14 -57.73 -1.05 -20.78 16 25 O -0.93 -19.00 16.32 -66.29 -1.08 -20.08 16 26 C -0.59 -11.18 6.77 38.20 0.26 -10.92 16 27 C 0.18 3.40 2.84 -67.65 -0.19 3.20 16 28 H 0.09 1.57 7.85 -51.93 -0.41 1.16 16 29 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.06 1.26 7.57 -51.93 -0.39 0.87 16 31 H 0.07 1.56 6.59 -51.93 -0.34 1.22 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.09 5.46 -51.93 -0.28 0.81 16 34 H 0.13 1.37 6.05 -52.49 -0.32 1.05 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.84 6.26 -51.93 -0.33 1.52 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.50 8.14 -51.93 -0.42 1.07 16 42 H 0.22 3.36 4.18 -58.85 -0.25 3.11 16 43 H 0.13 2.45 8.14 -51.93 -0.42 2.02 16 44 H 0.13 2.61 8.14 -51.93 -0.42 2.19 16 LS Contribution 351.27 15.07 5.29 5.29 Total: -1.00 -31.28 351.27 -10.98 -42.26 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.08 Total: 9.26 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.95 Total: -19.23 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.35 Total: -45.33 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.24 Total: -49.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.18 kcal Atomic # 16 Polarization: 42.66 SS G_CDS: -0.63 Total: 42.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.28 -10.98 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094615698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.604 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds