Wall clock time and date at job start Tue Mar 31 2020 23:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 120.00141 * 2 1 4 4 H 1.48497 * 109.46789 * 269.99962 * 3 2 1 5 5 H 1.48498 * 109.46807 * 29.99937 * 3 2 1 6 6 H 1.48499 * 109.46922 * 149.99967 * 3 2 1 7 7 C 1.38811 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00025 * 187.64506 * 7 2 1 9 9 N 1.36933 * 120.00125 * 7.65707 * 7 2 1 10 10 C 1.44366 * 116.72228 * 32.80868 * 9 7 2 11 11 C 1.51861 * 114.40257 * 157.68639 * 10 9 7 12 12 N 1.46470 * 110.96285 * 28.71432 * 11 10 9 13 13 C 1.34775 * 120.91625 * 128.05636 * 12 11 10 14 14 O 1.21618 * 119.99766 * 186.98643 * 13 12 11 15 15 C 1.47095 * 120.00017 * 6.98368 * 13 12 11 16 16 C 1.32995 * 119.99837 * 180.18219 * 15 13 12 17 17 C 1.50705 * 120.00313 * 351.09396 * 16 15 13 18 18 C 1.52991 * 117.50321 * 180.30997 * 17 16 15 19 19 C 1.52994 * 117.49530 * 111.64812 * 17 16 15 20 20 C 1.46864 * 118.16322 * 308.32479 * 12 11 10 21 21 H 1.09001 * 109.84320 * 300.37846 * 20 12 11 22 22 C 1.53835 * 109.42545 * 179.90938 * 20 12 11 23 23 S 1.82872 * 105.04056 * 267.35795 * 22 20 12 24 24 O 1.42102 * 109.34807 * 245.34125 * 23 22 20 25 25 O 1.42098 * 109.47132 * 112.18565 * 23 22 20 26 26 C 1.83205 * 97.05152 * 358.74455 * 23 22 20 27 27 C 1.45106 * 116.72349 * 212.79441 * 9 7 2 28 28 H 1.08993 * 109.80303 * 332.49029 * 27 9 7 29 29 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 30 30 H 1.09005 * 108.49714 * 36.41688 * 10 9 7 31 31 H 1.08997 * 108.49914 * 278.96508 * 10 9 7 32 32 H 1.08998 * 109.17903 * 268.32938 * 11 10 9 33 33 H 1.09001 * 109.13506 * 149.06862 * 11 10 9 34 34 H 1.07994 * 120.00429 * 0.18238 * 15 13 12 35 35 H 1.08002 * 119.99958 * 170.82087 * 16 15 13 36 36 H 1.08998 * 115.54858 * 325.98787 * 17 16 15 37 37 H 1.08998 * 117.49727 * 0.02562 * 18 17 16 38 38 H 1.08998 * 117.50375 * 145.01815 * 18 17 16 39 39 H 1.09002 * 117.49771 * 214.98131 * 19 17 16 40 40 H 1.09003 * 117.50502 * 0.02562 * 19 17 16 41 41 H 1.09002 * 110.40167 * 148.47767 * 22 20 12 42 42 H 1.08997 * 110.46921 * 26.27056 * 22 20 12 43 43 H 1.09004 * 110.72876 * 218.84187 * 26 23 22 44 44 H 1.08999 * 110.87873 * 95.62273 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0830 -1.2063 0.1250 9 7 1.3347 -2.3828 -0.1569 10 6 0.1607 -2.3520 -0.9965 11 6 -0.2361 -3.7011 -1.5699 12 7 0.1774 -4.7900 -0.6819 13 6 -0.7025 -5.7293 -0.2819 14 8 -0.3769 -6.5511 0.5534 15 6 -2.0566 -5.7605 -0.8557 16 6 -2.9260 -6.6852 -0.4583 17 6 -2.4699 -7.8188 0.4238 18 6 -3.5160 -8.8543 0.8410 19 6 -2.9871 -7.8455 1.8635 20 6 1.5757 -4.8266 -0.2346 21 1 2.2384 -4.8985 -1.0971 22 6 1.7873 -6.0422 0.6842 23 16 1.5085 -5.4112 2.3778 24 8 2.7226 -5.4827 3.1127 25 8 0.3243 -5.9892 2.9096 26 6 1.1795 -3.6688 1.9173 27 6 1.8712 -3.5390 0.5366 28 1 2.9464 -3.4226 0.6716 29 1 -0.4850 0.8401 0.0004 30 1 0.3445 -1.6656 -1.8231 31 1 -0.6735 -1.9664 -0.4105 32 1 0.2400 -3.8311 -2.5418 33 1 -1.3185 -3.7319 -1.6945 34 1 -2.3448 -5.0326 -1.5995 35 1 -3.9598 -6.6213 -0.7642 36 1 -1.4542 -8.1725 0.2473 37 1 -4.5341 -8.7160 0.4770 38 1 -3.1886 -9.8893 0.9391 39 1 -2.3116 -8.2173 2.6340 40 1 -3.6574 -7.0435 2.1726 41 1 2.8045 -6.4212 0.5848 42 1 1.0679 -6.8268 0.4501 43 1 1.6292 -2.9873 2.6395 44 1 0.1085 -3.4853 1.8310 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094615698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:47:01 Heat of formation + Delta-G solvation = 9.832507 kcal Electronic energy + Delta-G solvation = -29806.779099 eV Core-core repulsion = 25855.329892 eV Total energy + Delta-G solvation = -3951.449207 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90231 -39.35907 -38.05952 -37.79961 -36.88175 -35.91789 -35.36957 -33.26728 -32.77949 -30.12425 -29.55445 -26.75563 -25.60754 -24.73165 -23.59635 -23.07628 -22.32796 -20.76215 -19.86288 -19.60447 -18.66188 -18.04621 -17.67694 -17.57713 -16.81587 -16.72255 -16.44583 -16.16413 -15.89230 -15.57178 -15.41972 -15.14608 -15.06876 -14.39910 -14.22144 -14.07109 -13.98831 -13.66227 -13.09590 -13.06073 -13.05134 -12.90432 -12.79517 -12.62233 -12.38845 -12.32516 -12.27645 -12.18345 -12.12914 -11.89061 -11.77263 -11.55396 -11.12718 -11.05622 -10.61452 -10.02799 -9.74273 -9.50279 -8.70467 -7.78093 -5.49417 -0.71084 0.39687 1.46082 1.49293 1.55966 1.77554 1.89251 2.25110 2.47279 2.74554 3.17820 3.22447 3.29086 3.33335 3.57792 3.68226 3.81480 3.84809 3.97409 4.09712 4.15598 4.22735 4.28576 4.34927 4.47547 4.53827 4.56098 4.58452 4.73136 4.78827 4.88082 4.92890 5.07305 5.11958 5.30509 5.34874 5.40170 5.44405 5.62046 5.67533 5.69755 5.87059 6.39190 6.44791 7.17655 7.21568 7.87664 8.14083 9.10797 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.004593 C = 0.003884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.583330 B = 6094.887611 C = 7207.282362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.030 4.030 3 Si 0.962 3.038 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.273 1.273 7 C -0.285 4.285 8 H 0.070 0.930 9 N -0.577 5.577 10 C 0.168 3.832 11 C 0.098 3.902 12 N -0.596 5.596 13 C 0.536 3.464 14 O -0.535 6.535 15 C -0.236 4.236 16 C -0.016 4.016 17 C -0.141 4.141 18 C -0.163 4.163 19 C -0.170 4.170 20 C 0.153 3.847 21 H 0.126 0.874 22 C -0.623 4.623 23 S 2.388 3.612 24 O -0.993 6.993 25 O -0.958 6.958 26 C -0.592 4.592 27 C 0.171 3.829 28 H 0.093 0.907 29 H 0.250 0.750 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.153 0.847 42 H 0.229 0.771 43 H 0.115 0.885 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.162 -13.903 -6.517 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.228 4.228 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.225 1.225 6 H -0.198 1.198 7 C -0.416 4.416 8 H 0.088 0.912 9 N -0.297 5.297 10 C 0.042 3.958 11 C -0.025 4.025 12 N -0.327 5.327 13 C 0.331 3.669 14 O -0.420 6.420 15 C -0.256 4.256 16 C -0.036 4.036 17 C -0.159 4.159 18 C -0.199 4.199 19 C -0.207 4.207 20 C 0.048 3.952 21 H 0.144 0.856 22 C -0.754 4.754 23 S 2.575 3.425 24 O -0.990 6.990 25 O -0.955 6.955 26 C -0.725 4.725 27 C 0.060 3.940 28 H 0.110 0.890 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.172 0.828 35 H 0.176 0.824 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.170 0.830 42 H 0.243 0.757 43 H 0.134 0.866 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.119 -14.628 -5.222 16.354 hybrid contribution 0.541 2.254 -0.174 2.324 sum -4.578 -12.374 -5.395 14.255 Atomic orbital electron populations 1.70148 1.06280 1.25673 1.54591 1.25895 0.96090 1.01131 0.99634 0.85364 0.78046 0.79887 0.77682 1.20717 1.22500 1.19772 1.19596 0.91164 0.84792 1.46029 0.91228 1.42823 1.29972 1.04844 1.52108 1.20300 0.89565 0.92851 0.93054 1.22145 1.02316 0.85081 0.92915 1.47672 1.09189 1.26781 1.49052 1.19255 0.86344 0.80092 0.81178 1.90236 1.75568 1.42291 1.33878 1.22773 0.92893 1.04205 1.05705 1.23446 0.99161 0.90496 0.90480 1.21565 0.99655 0.98149 0.96540 1.23176 0.99000 0.95483 1.02284 1.22739 1.03347 1.02517 0.92110 1.21539 0.83975 0.91011 0.98705 0.85631 1.32133 1.16083 1.10616 1.16587 1.08771 0.74179 0.79468 0.80044 1.93494 1.47344 1.86724 1.71427 1.93519 1.48035 1.75677 1.78287 1.31200 1.09659 1.21451 1.10218 1.21211 0.97655 0.88405 0.86747 0.88971 0.94023 0.94737 0.95251 0.89722 0.87185 0.82766 0.82419 0.86521 0.86927 0.88036 0.90209 0.89354 0.82954 0.75677 0.86631 0.87374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.72 10.60 21.65 0.23 -49.49 16 2 C -0.03 -1.55 5.09 84.86 0.43 -1.12 16 3 Si 0.96 42.15 29.56 68.60 2.03 44.17 16 4 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.29 -14.20 9.19 84.03 0.77 -13.42 16 8 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 9 N -0.58 -25.27 2.77 -684.98 -1.90 -27.17 16 10 C 0.17 6.85 4.93 86.40 0.43 7.28 16 11 C 0.10 2.78 6.39 86.01 0.55 3.33 16 12 N -0.60 -17.18 2.80 -801.95 -2.25 -19.43 16 13 C 0.54 15.20 7.46 86.57 0.65 15.85 16 14 O -0.54 -16.79 6.65 16.56 0.11 -16.68 16 15 C -0.24 -5.20 9.27 23.43 0.22 -4.98 16 16 C -0.02 -0.32 9.74 24.52 0.24 -0.08 16 17 C -0.14 -3.23 4.31 -11.54 -0.05 -3.28 16 18 C -0.16 -2.88 10.24 30.61 0.31 -2.57 16 19 C -0.17 -4.19 10.24 30.62 0.31 -3.88 16 20 C 0.15 4.48 3.36 45.19 0.15 4.63 16 21 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 22 C -0.62 -17.17 6.10 72.26 0.44 -16.73 16 23 S 2.39 85.35 5.82 -56.49 -0.33 85.02 16 24 O -0.99 -40.26 18.14 -127.47 -2.31 -42.57 16 25 O -0.96 -39.58 16.32 -119.28 -1.95 -41.52 16 26 C -0.59 -23.08 6.77 72.66 0.49 -22.59 16 27 C 0.17 6.35 2.84 45.92 0.13 6.48 16 28 H 0.09 3.28 7.85 -2.39 -0.02 3.26 16 29 H 0.25 13.25 8.31 -92.70 -0.77 12.48 16 30 H 0.03 1.54 7.57 -2.38 -0.02 1.52 16 31 H 0.03 1.43 6.59 -2.39 -0.02 1.41 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.01 16 33 H 0.11 2.56 5.46 -2.39 -0.01 2.54 16 34 H 0.15 2.64 6.05 -2.91 -0.02 2.62 16 35 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.12 3.08 6.26 -2.39 -0.01 3.07 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 42 H 0.23 6.36 4.18 -112.04 -0.47 5.89 16 43 H 0.12 4.67 8.14 -2.38 -0.02 4.65 16 44 H 0.11 4.63 8.14 -2.39 -0.02 4.61 16 Total: -1.00 -69.78 351.27 -0.74 -70.52 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.56 Total: 28.23 kcal Atomic # 6 Polarization: -36.14 SS G_CDS: 5.07 Total: -31.07 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -3.92 Total: -96.09 kcal Atomic # 8 Polarization: -96.62 SS G_CDS: -4.15 Total: -100.77 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 85.35 SS G_CDS: -0.33 Total: 85.02 kcal Total: -69.78 -0.74 -70.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094615698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.349 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds