Wall clock time and date at job start Tue Mar 31 2020 23:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99809 * 2 1 4 4 H 1.48499 * 109.47217 * 275.34782 * 3 2 1 5 5 H 1.48498 * 109.47601 * 35.35393 * 3 2 1 6 6 H 1.48509 * 109.47101 * 155.35312 * 3 2 1 7 7 C 1.38810 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 340.20793 * 7 2 1 9 9 N 1.36934 * 120.00156 * 159.92975 * 7 2 1 10 10 C 1.46940 * 120.45091 * 334.41477 * 9 7 2 11 11 C 1.52917 * 108.78278 * 235.27392 * 10 9 7 12 12 N 1.46936 * 108.58910 * 310.08183 * 11 10 9 13 13 C 1.34774 * 120.45952 * 235.19569 * 12 11 10 14 14 O 1.21612 * 119.99900 * 8.73144 * 13 12 11 15 15 C 1.47101 * 119.99919 * 188.72974 * 13 12 11 16 16 C 1.32616 * 124.62176 * 187.37727 * 15 13 12 17 17 C 1.51106 * 110.75914 * 179.97438 * 16 15 13 18 18 C 1.54573 * 104.84205 * 16.59706 * 17 16 15 19 19 C 1.51116 * 124.62122 * 7.07245 * 15 13 12 20 20 C 1.46782 * 119.07872 * 55.21760 * 12 11 10 21 21 H 1.09008 * 110.00150 * 185.59726 * 20 12 11 22 22 C 1.53988 * 109.05723 * 65.10111 * 20 12 11 23 23 S 1.82882 * 105.24504 * 214.21095 * 22 20 12 24 24 O 1.42102 * 109.34624 * 115.04268 * 23 22 20 25 25 O 1.42095 * 109.34898 * 248.23582 * 23 22 20 26 26 C 1.83238 * 97.04490 * 1.63830 * 23 22 20 27 27 C 1.46763 * 120.45602 * 154.69168 * 9 7 2 28 28 H 1.08994 * 110.43601 * 247.69953 * 27 9 7 29 29 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.62632 * 355.03439 * 10 9 7 31 31 H 1.09003 * 109.62380 * 115.61018 * 10 9 7 32 32 H 1.08998 * 109.71306 * 190.28422 * 11 10 9 33 33 H 1.09002 * 109.64058 * 69.83876 * 11 10 9 34 34 H 1.07997 * 124.61729 * 359.97290 * 16 15 13 35 35 H 1.09003 * 110.36701 * 135.43618 * 17 16 15 36 36 H 1.08999 * 110.36753 * 257.64489 * 17 16 15 37 37 H 1.09007 * 110.98607 * 93.07305 * 18 17 16 38 38 H 1.08999 * 110.98564 * 216.83691 * 18 17 16 39 39 H 1.08999 * 110.36791 * 282.24427 * 19 15 13 40 40 H 1.08998 * 110.36348 * 44.56380 * 19 15 13 41 41 H 1.09002 * 110.28754 * 333.15769 * 22 20 12 42 42 H 1.08996 * 110.29180 * 95.26832 * 22 20 12 43 43 H 1.08993 * 110.75536 * 264.62278 * 26 23 22 44 44 H 1.09007 * 110.75001 * 141.26695 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3846 2.1117 -1.3940 5 1 1.5088 2.6174 0.8101 6 1 3.5998 1.4102 0.5839 7 6 2.0103 -1.2021 0.0005 8 1 1.5181 -2.1097 0.3177 9 7 3.3173 -1.2383 -0.4064 10 6 3.8354 -0.2270 -1.3380 11 6 4.4457 -0.9378 -2.5466 12 7 5.3643 -1.9780 -2.0637 13 6 6.6481 -1.9997 -2.4735 14 8 7.0963 -1.0710 -3.1182 15 6 7.5070 -3.1466 -2.1409 16 6 8.8114 -3.2034 -2.3731 17 6 9.3814 -4.5230 -1.9072 18 6 8.1534 -5.4458 -1.7344 19 6 7.0245 -4.4181 -1.4820 20 6 4.8642 -2.9935 -1.1293 21 1 5.6851 -3.6267 -0.7924 22 6 3.8011 -3.8510 -1.8403 23 16 2.5837 -4.2797 -0.5447 24 8 1.3342 -3.6785 -0.8554 25 8 2.6537 -5.6732 -0.2754 26 6 3.3780 -3.3563 0.8243 27 6 4.2181 -2.2912 0.0772 28 1 4.9842 -1.8679 0.7267 29 1 -0.4850 0.8400 -0.0004 30 1 3.0214 0.4185 -1.6675 31 1 4.6015 0.3691 -0.8422 32 1 4.9938 -0.2201 -3.1571 33 1 3.6545 -1.3951 -3.1408 34 1 9.3878 -2.4140 -2.8325 35 1 10.0589 -4.9299 -2.6580 36 1 9.9006 -4.3978 -0.9570 37 1 7.9669 -6.0213 -2.6411 38 1 8.2781 -6.1046 -0.8750 39 1 6.8834 -4.2613 -0.4126 40 1 6.0958 -4.7551 -1.9426 41 1 3.3222 -3.2778 -2.6342 42 1 4.2546 -4.7550 -2.2467 43 1 4.0203 -4.0126 1.4114 44 1 2.6274 -2.8820 1.4568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094623828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:34 Heat of formation + Delta-G solvation = 0.570851 kcal Electronic energy + Delta-G solvation = -30143.724713 eV Core-core repulsion = 26191.873890 eV Total energy + Delta-G solvation = -3951.850823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.75138 -38.47995 -37.63793 -36.41576 -35.36957 -34.60402 -33.38660 -31.70025 -29.89952 -29.15117 -28.85449 -27.54569 -25.61222 -23.46556 -23.16437 -21.55301 -20.91853 -19.73858 -18.46814 -18.24192 -17.09230 -16.75369 -16.48888 -16.06556 -15.68275 -15.56831 -15.51180 -14.98665 -14.65227 -14.50554 -14.30490 -13.73621 -13.29103 -13.26260 -12.97476 -12.85300 -12.69548 -12.28549 -12.23811 -12.00006 -11.91483 -11.79464 -11.71000 -11.49805 -11.46839 -11.36330 -11.34057 -10.95554 -10.55055 -10.40239 -10.21070 -10.10854 -9.86971 -9.64630 -9.35088 -9.18104 -8.96521 -8.44430 -7.25666 -6.06602 -3.44952 0.56926 1.27614 2.93758 3.15238 3.20850 3.30110 3.38071 3.39854 4.08684 4.15374 4.27943 4.35678 4.41298 4.56927 4.66292 4.70335 4.79168 4.89114 4.94093 5.02597 5.14587 5.19977 5.32018 5.32857 5.38858 5.51938 5.58521 5.63385 5.65512 5.69390 5.77940 5.86229 5.94990 6.00531 6.05809 6.11787 6.18676 6.26184 6.34644 6.46980 6.67947 7.53270 7.64133 8.17146 8.24866 8.68941 9.48954 9.76131 11.05124 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.005701 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.223721 B = 4909.937789 C = 6485.607817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.036 3.964 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.279 4.279 8 H 0.119 0.881 9 N -0.599 5.599 10 C 0.111 3.889 11 C 0.089 3.911 12 N -0.583 5.583 13 C 0.564 3.436 14 O -0.548 6.548 15 C -0.190 4.190 16 C -0.076 4.076 17 C -0.107 4.107 18 C -0.126 4.126 19 C -0.106 4.106 20 C 0.096 3.904 21 H 0.141 0.859 22 C -0.608 4.608 23 S 2.369 3.631 24 O -0.892 6.892 25 O -0.966 6.966 26 C -0.583 4.583 27 C 0.168 3.832 28 H 0.078 0.922 29 H 0.266 0.734 30 H 0.090 0.910 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.141 0.859 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.890 -9.747 -1.681 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.166 4.166 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.408 4.408 8 H 0.136 0.864 9 N -0.324 5.324 10 C -0.014 4.014 11 C -0.034 4.034 12 N -0.314 5.314 13 C 0.354 3.646 14 O -0.427 6.427 15 C -0.193 4.193 16 C -0.096 4.096 17 C -0.143 4.143 18 C -0.163 4.163 19 C -0.143 4.143 20 C -0.011 4.011 21 H 0.158 0.842 22 C -0.735 4.735 23 S 2.551 3.449 24 O -0.889 6.889 25 O -0.963 6.963 26 C -0.712 4.712 27 C 0.060 3.940 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.159 0.841 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 15.089 -9.761 -2.055 18.088 hybrid contribution 0.994 1.693 -0.076 1.965 sum 16.083 -8.068 -2.131 18.119 Atomic orbital electron populations 1.69862 1.05676 1.26719 1.49694 1.25232 0.95134 0.97396 0.98856 0.87117 0.80271 0.84923 0.77138 1.21400 1.22875 1.19316 1.19530 0.83250 0.96480 1.41580 0.86359 1.44582 1.08547 1.29906 1.49352 1.21736 0.97977 0.92005 0.89717 1.22215 0.92492 0.90681 0.98036 1.47726 1.09555 1.29098 1.44989 1.18010 0.81364 0.85833 0.79349 1.90760 1.73443 1.37016 1.41509 1.21838 0.95679 0.96495 1.05290 1.24023 0.94565 0.97666 0.93351 1.21479 0.98411 0.92675 1.01781 1.22541 0.94011 0.97149 1.02624 1.21751 0.99855 0.92295 1.00358 1.23271 0.98068 0.89861 0.89873 0.84230 1.30795 1.15871 1.08876 1.18002 1.10487 0.78771 0.75486 0.80113 1.93737 1.36517 1.77002 1.81599 1.93519 1.88054 1.30624 1.84094 1.30913 1.13056 1.10357 1.16889 1.21206 0.92687 0.89148 0.90996 0.90471 0.92421 0.89261 0.94189 0.88993 0.90707 0.84526 0.90300 0.89612 0.90622 0.90208 0.88976 0.89517 0.84075 0.85613 0.85607 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.97 55.49 0.78 -24.82 16 2 C 0.04 0.97 5.26 -17.43 -0.09 0.88 16 3 Si 0.88 20.80 24.33 -169.99 -4.14 16.66 16 4 H -0.29 -6.63 6.69 56.52 0.38 -6.25 16 5 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.27 -6.21 6.36 56.52 0.36 -5.85 16 7 C -0.28 -6.94 7.89 -15.06 -0.12 -7.06 16 8 H 0.12 3.05 3.81 -52.48 -0.20 2.85 16 9 N -0.60 -12.42 2.58 -163.57 -0.42 -12.84 16 10 C 0.11 2.24 4.30 -3.84 -0.02 2.22 16 11 C 0.09 1.56 6.20 -3.85 -0.02 1.53 16 12 N -0.58 -9.17 2.65 -165.91 -0.44 -9.61 16 13 C 0.56 8.90 7.64 -12.67 -0.10 8.81 16 14 O -0.55 -10.31 16.20 5.27 0.09 -10.23 16 15 C -0.19 -2.28 5.95 -102.73 -0.61 -2.89 16 16 C -0.08 -0.78 10.44 -36.01 -0.38 -1.15 16 17 C -0.11 -0.75 6.80 -26.86 -0.18 -0.94 16 18 C -0.13 -0.89 7.17 -24.99 -0.18 -1.07 16 19 C -0.11 -0.98 4.38 -26.76 -0.12 -1.09 16 20 C 0.10 1.33 2.18 -66.83 -0.15 1.19 16 21 H 0.14 1.52 2.44 -73.22 -0.18 1.34 16 22 C -0.61 -8.43 6.46 37.67 0.24 -8.18 16 23 S 2.37 39.49 5.76 -107.50 -0.62 38.87 16 24 O -0.89 -19.77 15.02 -57.71 -0.87 -20.64 16 25 O -0.97 -17.21 18.14 -57.71 -1.05 -18.26 16 26 C -0.58 -8.69 6.21 38.14 0.24 -8.46 16 27 C 0.17 2.74 3.62 -66.37 -0.24 2.50 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.09 1.95 4.11 -51.93 -0.21 1.74 16 31 H 0.04 0.81 7.07 -51.93 -0.37 0.44 16 32 H 0.09 1.59 6.99 -51.93 -0.36 1.22 16 33 H 0.07 1.28 6.89 -51.93 -0.36 0.92 16 34 H 0.14 1.41 8.04 -52.49 -0.42 0.99 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.73 6.75 -51.93 -0.35 0.38 16 40 H 0.09 0.80 5.17 -51.93 -0.27 0.53 16 41 H 0.14 2.13 6.48 -51.93 -0.34 1.79 16 42 H 0.13 1.35 6.69 -51.93 -0.35 1.00 16 43 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.16 2.70 6.23 -51.92 -0.32 2.37 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -35.30 331.15 -8.86 -44.16 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.47 Total: 5.43 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.72 Total: -13.72 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.09 Total: -47.27 kcal Atomic # 8 Polarization: -47.30 SS G_CDS: -1.83 Total: -49.13 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.14 Total: 16.66 kcal Atomic # 16 Polarization: 39.49 SS G_CDS: -0.62 Total: 38.87 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.30 -8.86 -44.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094623828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.735 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds