Wall clock time and date at job start Tue Mar 31 2020 23:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 119.99809 * 2 1 4 4 H 1.48499 * 109.47217 * 275.34782 * 3 2 1 5 5 H 1.48498 * 109.47601 * 35.35393 * 3 2 1 6 6 H 1.48509 * 109.47101 * 155.35312 * 3 2 1 7 7 C 1.38810 * 120.00080 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99825 * 340.20793 * 7 2 1 9 9 N 1.36934 * 120.00156 * 159.92975 * 7 2 1 10 10 C 1.46940 * 120.45091 * 334.41477 * 9 7 2 11 11 C 1.52917 * 108.78278 * 235.27392 * 10 9 7 12 12 N 1.46936 * 108.58910 * 310.08183 * 11 10 9 13 13 C 1.34774 * 120.45952 * 235.19569 * 12 11 10 14 14 O 1.21612 * 119.99900 * 8.73144 * 13 12 11 15 15 C 1.47101 * 119.99919 * 188.72974 * 13 12 11 16 16 C 1.32616 * 124.62176 * 187.37727 * 15 13 12 17 17 C 1.51106 * 110.75914 * 179.97438 * 16 15 13 18 18 C 1.54573 * 104.84205 * 16.59706 * 17 16 15 19 19 C 1.51116 * 124.62122 * 7.07245 * 15 13 12 20 20 C 1.46782 * 119.07872 * 55.21760 * 12 11 10 21 21 H 1.09008 * 110.00150 * 185.59726 * 20 12 11 22 22 C 1.53988 * 109.05723 * 65.10111 * 20 12 11 23 23 S 1.82882 * 105.24504 * 214.21095 * 22 20 12 24 24 O 1.42102 * 109.34624 * 115.04268 * 23 22 20 25 25 O 1.42095 * 109.34898 * 248.23582 * 23 22 20 26 26 C 1.83238 * 97.04490 * 1.63830 * 23 22 20 27 27 C 1.46763 * 120.45602 * 154.69168 * 9 7 2 28 28 H 1.08994 * 110.43601 * 247.69953 * 27 9 7 29 29 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.62632 * 355.03439 * 10 9 7 31 31 H 1.09003 * 109.62380 * 115.61018 * 10 9 7 32 32 H 1.08998 * 109.71306 * 190.28422 * 11 10 9 33 33 H 1.09002 * 109.64058 * 69.83876 * 11 10 9 34 34 H 1.07997 * 124.61729 * 359.97290 * 16 15 13 35 35 H 1.09003 * 110.36701 * 135.43618 * 17 16 15 36 36 H 1.08999 * 110.36753 * 257.64489 * 17 16 15 37 37 H 1.09007 * 110.98607 * 93.07305 * 18 17 16 38 38 H 1.08999 * 110.98564 * 216.83691 * 18 17 16 39 39 H 1.08999 * 110.36791 * 282.24427 * 19 15 13 40 40 H 1.08998 * 110.36348 * 44.56380 * 19 15 13 41 41 H 1.09002 * 110.28754 * 333.15769 * 22 20 12 42 42 H 1.08996 * 110.29180 * 95.26832 * 22 20 12 43 43 H 1.08993 * 110.75536 * 264.62278 * 26 23 22 44 44 H 1.09007 * 110.75001 * 141.26695 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3846 2.1117 -1.3940 5 1 1.5088 2.6174 0.8101 6 1 3.5998 1.4102 0.5839 7 6 2.0103 -1.2021 0.0005 8 1 1.5181 -2.1097 0.3177 9 7 3.3173 -1.2383 -0.4064 10 6 3.8354 -0.2270 -1.3380 11 6 4.4457 -0.9378 -2.5466 12 7 5.3643 -1.9780 -2.0637 13 6 6.6481 -1.9997 -2.4735 14 8 7.0963 -1.0710 -3.1182 15 6 7.5070 -3.1466 -2.1409 16 6 8.8114 -3.2034 -2.3731 17 6 9.3814 -4.5230 -1.9072 18 6 8.1534 -5.4458 -1.7344 19 6 7.0245 -4.4181 -1.4820 20 6 4.8642 -2.9935 -1.1293 21 1 5.6851 -3.6267 -0.7924 22 6 3.8011 -3.8510 -1.8403 23 16 2.5837 -4.2797 -0.5447 24 8 1.3342 -3.6785 -0.8554 25 8 2.6537 -5.6732 -0.2754 26 6 3.3780 -3.3563 0.8243 27 6 4.2181 -2.2912 0.0772 28 1 4.9842 -1.8679 0.7267 29 1 -0.4850 0.8400 -0.0004 30 1 3.0214 0.4185 -1.6675 31 1 4.6015 0.3691 -0.8422 32 1 4.9938 -0.2201 -3.1571 33 1 3.6545 -1.3951 -3.1408 34 1 9.3878 -2.4140 -2.8325 35 1 10.0589 -4.9299 -2.6580 36 1 9.9006 -4.3978 -0.9570 37 1 7.9669 -6.0213 -2.6411 38 1 8.2781 -6.1046 -0.8750 39 1 6.8834 -4.2613 -0.4126 40 1 6.0958 -4.7551 -1.9426 41 1 3.3222 -3.2778 -2.6342 42 1 4.2546 -4.7550 -2.2467 43 1 4.0203 -4.0126 1.4114 44 1 2.6274 -2.8820 1.4568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094623828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:33 Heat of formation + Delta-G solvation = -27.568363 kcal Electronic energy + Delta-G solvation = -30144.944920 eV Core-core repulsion = 26191.873890 eV Total energy + Delta-G solvation = -3953.071031 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.91116 -39.63896 -38.66277 -37.90427 -36.89447 -36.10430 -34.77491 -33.50115 -30.92851 -30.26882 -29.70685 -28.80594 -27.12306 -24.81834 -24.57335 -22.63279 -21.87184 -21.01841 -19.75124 -19.42847 -18.56212 -18.04336 -17.88439 -17.27911 -17.05014 -16.91872 -16.52566 -16.47863 -15.94285 -15.82024 -15.65468 -15.10013 -14.69571 -14.60455 -14.24622 -13.98868 -13.89647 -13.67202 -13.42907 -13.17297 -13.11476 -12.99156 -12.93834 -12.87429 -12.67248 -12.48657 -12.38682 -12.04541 -11.99928 -11.85219 -11.79147 -11.39918 -11.36916 -11.07977 -10.98169 -10.69582 -10.06537 -9.74938 -8.97470 -8.05508 -5.43797 -0.76309 0.37315 1.28958 1.41113 1.46504 1.64280 1.92121 2.18923 2.42960 2.75530 2.90105 3.14173 3.30059 3.38092 3.51681 3.58880 3.63882 3.73568 3.81205 4.05088 4.12568 4.18874 4.21702 4.28645 4.39308 4.49058 4.53524 4.63618 4.69878 4.74324 4.78741 4.83520 4.93041 4.98459 5.01993 5.03927 5.26894 5.28283 5.41456 5.47323 5.55618 5.85006 6.25891 6.36680 6.84154 7.05351 7.58923 7.92092 9.11441 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.005701 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.223721 B = 4909.937789 C = 6485.607817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.028 4.028 3 Si 0.927 3.073 4 H -0.286 1.286 5 H -0.318 1.318 6 H -0.257 1.257 7 C -0.255 4.255 8 H 0.106 0.894 9 N -0.616 5.616 10 C 0.110 3.890 11 C 0.096 3.904 12 N -0.584 5.584 13 C 0.561 3.439 14 O -0.588 6.588 15 C -0.218 4.218 16 C -0.059 4.059 17 C -0.103 4.103 18 C -0.119 4.119 19 C -0.114 4.114 20 C 0.098 3.902 21 H 0.186 0.814 22 C -0.592 4.592 23 S 2.384 3.616 24 O -0.957 6.957 25 O -0.972 6.972 26 C -0.570 4.570 27 C 0.159 3.841 28 H 0.097 0.903 29 H 0.257 0.743 30 H 0.065 0.935 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.171 0.829 43 H 0.185 0.815 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.382 -13.157 -1.225 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.223 4.223 3 Si 0.758 3.242 4 H -0.213 1.213 5 H -0.248 1.248 6 H -0.181 1.181 7 C -0.384 4.384 8 H 0.123 0.877 9 N -0.342 5.342 10 C -0.016 4.016 11 C -0.028 4.028 12 N -0.314 5.314 13 C 0.354 3.646 14 O -0.471 6.471 15 C -0.221 4.221 16 C -0.079 4.079 17 C -0.140 4.140 18 C -0.157 4.157 19 C -0.150 4.150 20 C -0.007 4.007 21 H 0.202 0.798 22 C -0.723 4.723 23 S 2.570 3.430 24 O -0.954 6.954 25 O -0.969 6.969 26 C -0.702 4.702 27 C 0.052 3.948 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.145 0.855 35 H 0.113 0.887 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.121 0.879 39 H 0.130 0.870 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.189 0.811 43 H 0.203 0.797 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.597 -13.175 -1.585 23.667 hybrid contribution -0.107 2.461 -0.290 2.480 sum 19.490 -10.714 -1.875 22.319 Atomic orbital electron populations 1.70000 1.07280 1.26522 1.55458 1.25753 0.95501 1.00152 1.00873 0.86268 0.79262 0.81933 0.76731 1.21339 1.24807 1.18085 1.19551 0.84942 0.95509 1.38428 0.87738 1.44602 1.08062 1.31182 1.50336 1.21641 0.97103 0.92112 0.90695 1.21955 0.92804 0.91280 0.96764 1.47723 1.09524 1.28781 1.45368 1.18680 0.81225 0.86416 0.78299 1.90739 1.74072 1.38938 1.43313 1.21778 0.95761 0.96546 1.08029 1.24374 0.94107 0.98702 0.90740 1.21572 0.98855 0.90603 1.02963 1.22563 0.92534 0.96698 1.03880 1.21858 1.00823 0.91248 1.01085 1.23576 0.99011 0.89637 0.88472 0.79846 1.30718 1.14415 1.10830 1.16317 1.08957 0.78092 0.74877 0.81055 1.93703 1.40716 1.77906 1.83077 1.93524 1.88186 1.30588 1.84594 1.30723 1.13093 1.10414 1.15950 1.21625 0.92423 0.88220 0.92547 0.88532 0.93343 0.91718 0.94307 0.89180 0.90800 0.85508 0.88736 0.87746 0.90280 0.87923 0.86994 0.89343 0.85082 0.81127 0.79749 0.84075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.06 13.97 21.65 0.30 -58.75 16 2 C -0.03 -1.56 5.26 84.86 0.45 -1.11 16 3 Si 0.93 45.30 24.33 68.60 1.67 46.97 16 4 H -0.29 -13.60 6.69 99.48 0.67 -12.94 16 5 H -0.32 -16.22 7.11 99.48 0.71 -15.51 16 6 H -0.26 -11.75 6.36 99.48 0.63 -11.12 16 7 C -0.26 -13.05 7.89 84.03 0.66 -12.38 16 8 H 0.11 5.59 3.81 -2.91 -0.01 5.58 16 9 N -0.62 -25.23 2.58 -671.40 -1.73 -26.96 16 10 C 0.11 4.44 4.30 86.27 0.37 4.81 16 11 C 0.10 3.31 6.20 86.27 0.54 3.85 16 12 N -0.58 -16.91 2.65 -797.06 -2.11 -19.03 16 13 C 0.56 16.32 7.64 86.57 0.66 16.98 16 14 O -0.59 -21.57 16.20 -4.07 -0.07 -21.64 16 15 C -0.22 -4.33 5.95 -18.57 -0.11 -4.44 16 16 C -0.06 -0.98 10.44 24.65 0.26 -0.72 16 17 C -0.10 -0.88 6.80 30.51 0.21 -0.68 16 18 C -0.12 -0.93 7.17 31.72 0.23 -0.70 16 19 C -0.11 -1.40 4.38 30.57 0.13 -1.27 16 20 C 0.10 2.33 2.18 45.55 0.10 2.43 16 21 H 0.19 2.85 2.44 -22.38 -0.05 2.80 16 22 C -0.59 -14.28 6.46 72.32 0.47 -13.82 16 23 S 2.38 74.16 5.76 -56.49 -0.33 73.84 16 24 O -0.96 -43.13 15.02 -127.49 -1.92 -45.04 16 25 O -0.97 -31.29 18.14 -127.49 -2.31 -33.60 16 26 C -0.57 -15.08 6.21 72.62 0.45 -14.63 16 27 C 0.16 4.67 3.62 45.86 0.17 4.84 16 28 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.06 2.93 4.11 -2.39 -0.01 2.92 16 31 H 0.04 1.56 7.07 -2.39 -0.02 1.54 16 32 H 0.09 3.13 6.99 -2.39 -0.02 3.11 16 33 H 0.07 2.53 6.89 -2.39 -0.02 2.51 16 34 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 35 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 38 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.11 0.93 6.75 -2.39 -0.02 0.91 16 40 H 0.09 1.05 5.17 -2.39 -0.01 1.03 16 41 H 0.13 3.68 6.48 -2.39 -0.02 3.67 16 42 H 0.17 2.68 6.69 -2.39 -0.02 2.67 16 43 H 0.18 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.14 4.57 6.23 -2.38 -0.01 4.55 16 Total: -1.00 -83.98 331.15 -1.02 -85.00 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.89 Total: 16.05 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 4.58 Total: -16.83 kcal Atomic # 7 Polarization: -101.20 SS G_CDS: -3.54 Total: -104.74 kcal Atomic # 8 Polarization: -95.99 SS G_CDS: -4.29 Total: -100.29 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.67 Total: 46.97 kcal Atomic # 16 Polarization: 74.16 SS G_CDS: -0.33 Total: 73.84 kcal Total: -83.98 -1.02 -85.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094623828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.429 kcal (2) G-P(sol) polarization free energy of solvation -83.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds