Wall clock time and date at job start Tue Mar 31 2020 23:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.38535 * 119.99807 * 2 1 4 4 N 1.32456 * 119.18607 * 359.97438 * 3 2 1 5 5 C 1.32304 * 120.76097 * 180.02562 * 4 3 2 6 6 C 1.38773 * 119.17001 * 0.02562 * 5 4 3 7 7 F 1.35104 * 120.74622 * 180.02562 * 6 5 4 8 8 C 1.38785 * 118.50983 * 0.27678 * 6 5 4 9 9 N 1.32299 * 119.16692 * 359.43988 * 8 6 5 10 10 C 1.46495 * 119.99822 * 180.02562 * 2 1 3 11 11 H 1.09007 * 110.88587 * 176.11810 * 10 2 1 12 12 C 1.55157 * 111.00477 * 299.99421 * 10 2 1 13 13 C 1.54318 * 102.94658 * 153.57999 * 12 10 2 14 14 N 1.47029 * 107.26806 * 337.81302 * 13 12 10 15 15 C 1.34776 * 125.64457 * 178.89711 * 14 13 12 16 16 O 1.21281 * 119.99631 * 180.02562 * 15 14 13 17 17 C 1.50697 * 120.00414 * 0.02562 * 15 14 13 18 18 S 1.81005 * 109.47188 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99913 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99918 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99809 * 179.97438 * 19 18 17 22 22 N 1.31629 * 120.00214 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 119.99933 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46919 * 59.99850 * 23 21 19 25 25 H 1.48499 * 109.47082 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47070 * 300.00185 * 23 21 19 27 27 C 1.47416 * 108.70263 * 358.93394 * 14 13 12 28 28 H 1.09000 * 109.47261 * 90.00384 * 1 2 3 29 29 H 1.09006 * 109.46654 * 209.99626 * 1 2 3 30 30 H 1.08994 * 109.47355 * 329.99572 * 1 2 3 31 31 H 1.08001 * 120.41389 * 179.97438 * 5 4 3 32 32 H 1.08004 * 120.41371 * 179.70296 * 8 6 5 33 33 H 1.09009 * 110.72260 * 271.94678 * 12 10 2 34 34 H 1.09005 * 110.71770 * 35.21804 * 12 10 2 35 35 H 1.09008 * 109.88035 * 97.22215 * 13 12 10 36 36 H 1.08990 * 109.88810 * 218.23748 * 13 12 10 37 37 H 1.09006 * 109.46944 * 300.00142 * 17 15 14 38 38 H 1.08997 * 109.47031 * 59.99730 * 17 15 14 39 39 H 0.97007 * 119.99812 * 179.97438 * 22 21 19 40 40 H 1.09004 * 110.37166 * 265.29052 * 27 14 13 41 41 H 1.09006 * 110.36628 * 142.96834 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1577 1.1998 0.0000 4 7 1.4792 2.3373 -0.0005 5 6 2.1089 3.5009 -0.0010 6 6 3.4965 3.5190 -0.0016 7 9 4.1720 4.6890 -0.0016 8 6 4.1748 2.3082 -0.0075 9 7 3.4821 1.1810 -0.0010 10 6 2.1975 -1.2687 -0.0006 11 1 3.2718 -1.0972 -0.0694 12 6 1.8485 -2.1130 1.2535 13 6 2.1064 -3.5588 0.7798 14 7 2.0266 -3.5578 -0.6883 15 6 2.2148 -4.6278 -1.4859 16 8 2.1245 -4.5102 -2.6896 17 6 2.5373 -5.9703 -0.8820 18 16 2.7314 -7.1943 -2.2013 19 6 3.0931 -8.6259 -1.2396 20 1 3.1356 -8.5564 -0.1627 21 6 3.3225 -9.8429 -1.8661 22 7 3.2702 -9.9277 -3.1786 23 14 3.7066 -11.3604 -0.8467 24 1 2.5746 -11.6382 0.0735 25 1 3.9099 -12.5234 -1.7474 26 1 4.9413 -11.1258 -0.0556 27 6 1.7075 -2.1924 -1.1435 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.5500 4.4250 -0.0019 32 1 5.2546 2.2864 -0.0129 33 1 2.5044 -1.8569 2.0857 34 1 0.8027 -1.9786 1.5300 35 1 3.0983 -3.8813 1.0968 36 1 1.3500 -4.2252 1.1940 37 1 3.4645 -5.8995 -0.3132 38 1 1.7271 -6.2749 -0.2196 39 1 3.4309 -10.7783 -3.6165 40 1 0.6326 -2.0816 -1.2864 41 1 2.2392 -1.9667 -2.0679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095105812.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:15 Heat of formation + Delta-G solvation = -0.178789 kcal Electronic energy + Delta-G solvation = -26018.460623 eV Core-core repulsion = 21975.409739 eV Total energy + Delta-G solvation = -4043.050884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.25408 -41.45083 -39.97584 -37.98430 -35.82504 -34.31712 -32.43989 -31.77097 -30.59201 -29.74220 -28.39611 -26.89545 -25.50002 -25.19812 -23.79502 -22.95883 -20.77873 -19.43440 -18.62194 -18.54711 -17.78801 -17.71900 -16.63542 -16.46704 -16.34110 -15.41830 -15.29654 -15.06352 -14.88482 -14.80839 -14.46704 -14.14756 -13.85562 -13.77351 -13.61238 -13.50411 -13.03643 -12.64748 -12.56152 -12.46159 -12.20675 -12.03819 -11.89360 -11.73462 -11.43276 -11.05711 -11.05334 -11.02852 -10.78268 -10.41324 -9.84139 -9.56539 -9.47684 -9.06898 -8.61870 -8.25554 -8.24923 -6.51802 -6.22388 -3.93493 0.50962 0.52488 2.01935 2.89914 3.01582 3.22764 3.24845 3.25673 3.28474 3.54127 3.56026 3.62112 3.97038 4.18216 4.23104 4.26480 4.36160 4.41344 4.64547 4.81920 4.93228 4.98939 5.04418 5.12628 5.14267 5.16823 5.38845 5.45700 5.50163 5.57678 5.63543 5.68204 5.74606 5.88795 5.90316 6.11242 6.19335 6.27390 6.39008 6.86682 7.57363 7.59249 7.67282 8.34001 8.49899 9.22629 10.84940 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028082 B = 0.001910 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.851871 B =14658.096120 C =14809.003154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.569 5.569 3 C 0.561 3.439 4 N -0.544 5.544 5 C 0.175 3.825 6 C -0.078 4.078 7 F -0.128 7.128 8 C 0.178 3.822 9 N -0.544 5.544 10 C 0.141 3.859 11 H 0.125 0.875 12 C -0.143 4.143 13 C 0.105 3.895 14 N -0.625 5.625 15 C 0.550 3.450 16 O -0.513 6.513 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.101 3.899 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.178 0.822 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.069 0.931 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 27.028 11.982 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.284 5.284 3 C 0.206 3.794 4 N -0.266 5.266 5 C 0.006 3.994 6 C -0.106 4.106 7 F -0.107 7.107 8 C 0.008 3.992 9 N -0.265 5.265 10 C 0.036 3.964 11 H 0.142 0.858 12 C -0.182 4.182 13 C -0.019 4.019 14 N -0.363 5.363 15 C 0.339 3.661 16 O -0.387 6.387 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.024 4.024 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.195 0.805 32 H 0.196 0.804 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.900 25.946 9.965 28.066 hybrid contribution 0.904 -0.055 2.096 2.284 sum -2.995 25.891 12.061 28.719 Atomic orbital electron populations 1.21746 0.77132 1.03546 1.02441 1.45922 1.05870 1.00879 1.75703 1.19266 0.85155 0.86315 0.88684 1.67966 1.40031 0.97134 1.21468 1.23115 0.90041 0.96587 0.89704 1.19122 0.92587 0.83660 1.15239 1.91519 1.79733 1.44693 1.94779 1.23160 1.01320 0.85384 0.89362 1.67962 1.06938 1.30388 1.21179 1.22332 0.98381 0.81002 0.94685 0.85754 1.23059 1.03181 0.93847 0.98074 1.21967 1.02542 0.96700 0.80711 1.48376 1.72809 1.08283 1.06858 1.20057 0.75596 0.84200 0.86255 1.90719 1.49464 1.84337 1.14141 1.23504 1.04349 0.95896 1.05919 1.85419 1.92152 0.99584 1.06219 1.22811 1.55923 0.94790 0.94856 0.90953 1.24994 0.94758 0.98599 0.95230 1.70010 1.46042 1.26328 1.07871 0.86221 0.78962 0.80761 0.79535 1.19935 1.20807 1.19923 1.22368 1.00788 0.81539 0.97711 0.92312 0.90616 0.89803 0.80469 0.80354 0.89425 0.89976 0.90769 0.90800 0.89170 0.89224 0.92111 0.91255 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 9.05 59.85 0.54 1.20 16 2 N -0.57 -5.12 3.01 -173.80 -0.52 -5.64 16 3 C 0.56 5.56 8.18 -322.72 -2.64 2.92 16 4 N -0.54 -4.95 9.11 -13.87 -0.13 -5.08 16 5 C 0.17 1.24 11.29 -17.15 -0.19 1.05 16 6 C -0.08 -0.58 7.38 -39.18 -0.29 -0.87 16 7 F -0.13 -0.97 17.30 2.25 0.04 -0.93 16 8 C 0.18 1.36 11.29 -17.15 -0.19 1.16 16 9 N -0.54 -5.32 8.90 -13.86 -0.12 -5.44 16 10 C 0.14 1.33 3.47 -65.79 -0.23 1.10 16 11 H 0.12 1.30 6.89 -51.92 -0.36 0.94 16 12 C -0.14 -1.10 6.51 -24.90 -0.16 -1.26 16 13 C 0.10 1.04 6.49 -3.06 -0.02 1.02 16 14 N -0.62 -8.75 3.33 -170.52 -0.57 -9.32 16 15 C 0.55 10.51 7.87 -10.99 -0.09 10.42 16 16 O -0.51 -11.89 16.12 5.56 0.09 -11.80 16 17 C -0.15 -2.96 5.35 36.00 0.19 -2.76 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 23 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.10 1.20 6.46 -2.54 -0.02 1.19 16 28 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 29 H 0.08 0.44 6.41 -51.93 -0.33 0.11 16 30 H 0.08 0.57 7.33 -51.93 -0.38 0.19 16 31 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 32 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.08 0.55 6.40 -51.93 -0.33 0.22 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.78 7.00 -51.93 -0.36 0.42 16 41 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -35.50 363.87 -10.23 -45.73 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.11 Total: -2.33 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -2.90 Total: 2.29 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.61 Total: -50.85 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.50 -10.23 -45.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095105812.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.552 kcal (2) G-P(sol) polarization free energy of solvation -35.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds