Wall clock time and date at job start Tue Mar 31 2020 23:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.38578 * 119.99780 * 2 1 4 4 C 1.39464 * 120.51343 * 190.36090 * 3 2 1 5 5 C 1.38468 * 118.31146 * 179.97438 * 4 3 2 6 6 F 1.35097 * 120.43122 * 179.97438 * 5 4 3 7 7 N 1.32790 * 119.13698 * 359.97438 * 5 4 3 8 8 C 1.31762 * 120.96465 * 0.02562 * 7 5 4 9 9 N 1.31761 * 121.85695 * 359.73583 * 8 7 5 10 10 C 1.46500 * 120.00463 * 179.97438 * 2 1 3 11 11 H 1.08998 * 110.89126 * 189.41577 * 10 2 1 12 12 C 1.55151 * 111.00359 * 313.34680 * 10 2 1 13 13 C 1.54331 * 103.02130 * 153.37550 * 12 10 2 14 14 N 1.47024 * 107.26585 * 338.14135 * 13 12 10 15 15 C 1.34779 * 125.64706 * 178.85213 * 14 13 12 16 16 O 1.21282 * 119.99656 * 179.69331 * 15 14 13 17 17 C 1.50696 * 120.00151 * 359.68469 * 15 14 13 18 18 S 1.80999 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99867 * 180.02562 * 18 17 15 20 20 H 1.08001 * 120.00374 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99805 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00303 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00033 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47052 * 89.99820 * 23 21 19 25 25 H 1.48493 * 109.47411 * 209.99940 * 23 21 19 26 26 H 1.48504 * 109.47076 * 330.00309 * 23 21 19 27 27 C 1.47421 * 108.70046 * 358.58212 * 14 13 12 28 28 H 1.09005 * 109.47253 * 269.99843 * 1 2 3 29 29 H 1.09000 * 109.47118 * 30.00005 * 1 2 3 30 30 H 1.08996 * 109.46993 * 150.00116 * 1 2 3 31 31 H 1.07997 * 120.84529 * 359.95593 * 4 3 2 32 32 H 1.07998 * 119.06851 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.71987 * 271.93360 * 12 10 2 34 34 H 1.09007 * 110.72223 * 35.02973 * 12 10 2 35 35 H 1.08996 * 109.99527 * 218.66413 * 13 12 10 36 36 H 1.09005 * 109.77668 * 97.49275 * 13 12 10 37 37 H 1.09001 * 109.47472 * 300.00688 * 17 15 14 38 38 H 1.08999 * 109.47086 * 60.00281 * 17 15 14 39 39 H 0.97005 * 120.00437 * 180.02562 * 22 21 19 40 40 H 1.09004 * 110.36543 * 143.19814 * 27 14 13 41 41 H 1.09001 * 110.36838 * 265.40822 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1578 1.2001 0.0000 4 6 3.5354 1.2225 -0.2161 5 6 4.1818 2.4470 -0.2071 6 9 5.5153 2.5184 -0.4112 7 7 3.4738 3.5503 0.0049 8 6 2.1729 3.4928 0.2056 9 7 1.5182 2.3494 0.2005 10 6 2.1976 -1.2687 0.0006 11 1 3.2619 -1.1028 0.1671 12 6 1.6147 -2.2470 1.0543 13 6 1.9736 -3.6329 0.4781 14 7 2.1941 -3.4616 -0.9654 15 6 2.5488 -4.4356 -1.8268 16 8 2.6985 -4.1800 -3.0029 17 6 2.7595 -5.8422 -1.3287 18 16 3.2254 -6.9095 -2.7143 19 6 3.4028 -8.4461 -1.8706 20 1 3.2297 -8.5008 -0.8059 21 6 3.7661 -9.5862 -2.5741 22 7 3.9785 -9.5193 -3.8714 23 14 3.9549 -11.2152 -1.6796 24 1 2.6544 -11.9323 -1.6772 25 1 4.9757 -12.0437 -2.3699 26 1 4.3844 -10.9647 -0.2803 27 6 1.9566 -2.0494 -1.3155 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.0842 0.3080 -0.3859 32 1 1.6270 4.4093 0.3745 33 1 2.0881 -2.0957 2.0244 34 1 0.5336 -2.1308 1.1320 35 1 1.1536 -4.3308 0.6476 36 1 2.8830 -4.0045 0.9505 37 1 3.5541 -5.8483 -0.5826 38 1 1.8370 -6.2107 -0.8799 39 1 4.2320 -10.3162 -4.3631 40 1 2.6596 -1.7255 -2.0830 41 1 0.9312 -1.9109 -1.6585 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095106522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:52 Heat of formation + Delta-G solvation = -2.322837 kcal Electronic energy + Delta-G solvation = -26181.120416 eV Core-core repulsion = 22137.976560 eV Total energy + Delta-G solvation = -4043.143856 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -49.49962 -41.41870 -40.11312 -38.22997 -36.19532 -33.36846 -32.47479 -32.10289 -31.12490 -29.87767 -28.53527 -27.03827 -25.54934 -24.94565 -23.84828 -23.00798 -20.93005 -19.53889 -18.94707 -18.58451 -17.78186 -17.15645 -16.74458 -16.66166 -16.03124 -15.66095 -15.57455 -15.22089 -15.00913 -14.84566 -14.73039 -14.26179 -14.06163 -13.94471 -13.83709 -13.64631 -13.14877 -12.74344 -12.64332 -12.59410 -12.16813 -12.07942 -11.85001 -11.38016 -11.30891 -11.10253 -11.06844 -11.02889 -10.80831 -10.23899 -9.88586 -9.86972 -9.56151 -9.10999 -8.76459 -8.49948 -8.29696 -6.56114 -6.26032 -3.97446 0.43454 0.73837 1.99741 2.81769 2.93148 3.00374 3.19087 3.22143 3.27018 3.28313 3.52506 3.69950 3.92830 4.04379 4.16025 4.18810 4.32035 4.63013 4.64866 4.70842 4.78750 4.87825 4.94046 5.09100 5.09234 5.11655 5.26781 5.31701 5.37999 5.47663 5.50982 5.57297 5.63548 5.82914 5.85899 5.98244 6.05579 6.22240 6.59579 6.68133 7.47624 7.55186 7.64339 8.30555 8.41274 9.19205 10.81355 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022925 B = 0.002069 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.097861 B =13532.721520 C =14026.182107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.581 5.581 3 C 0.464 3.536 4 C -0.317 4.317 5 C 0.386 3.614 6 F -0.100 7.100 7 N -0.593 5.593 8 C 0.376 3.624 9 N -0.579 5.579 10 C 0.132 3.868 11 H 0.111 0.889 12 C -0.139 4.139 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.550 3.450 16 O -0.511 6.511 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.098 3.902 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.156 0.844 32 H 0.208 0.792 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.084 0.916 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.799 22.834 13.450 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.291 5.291 3 C 0.222 3.778 4 C -0.346 4.346 5 C 0.228 3.772 6 F -0.079 7.079 7 N -0.319 5.319 8 C 0.086 3.914 9 N -0.305 5.305 10 C 0.027 3.973 11 H 0.129 0.871 12 C -0.178 4.178 13 C -0.020 4.020 14 N -0.365 5.365 15 C 0.339 3.661 16 O -0.384 6.384 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.027 4.027 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.173 0.827 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.019 23.640 11.591 27.248 hybrid contribution 0.670 -2.076 1.804 2.831 sum -6.349 21.564 13.396 26.168 Atomic orbital electron populations 1.21723 0.77443 1.03520 1.02253 1.46253 1.06347 1.01278 1.75272 1.18198 0.87141 0.86572 0.85876 1.21912 0.95543 0.99693 1.17490 1.17985 0.79072 0.89427 0.90709 1.91677 1.28512 1.96838 1.90884 1.67859 1.10214 1.31392 1.22409 1.24558 0.85077 0.95141 0.86596 1.68029 1.40823 0.97939 1.23664 1.22395 0.97327 0.81784 0.95780 0.87071 1.23024 1.02704 0.93283 0.98797 1.21990 1.02055 0.96955 0.81008 1.48400 1.71297 1.08209 1.08593 1.20087 0.75277 0.85601 0.85145 1.90728 1.49311 1.82268 1.16131 1.23504 1.04849 0.94625 1.06712 1.85435 1.89283 1.01601 1.07061 1.22843 1.54632 0.94178 0.96727 0.90896 1.25000 0.94578 0.99032 0.94978 1.70012 1.43745 1.29822 1.06626 0.86161 0.78135 0.81760 0.79399 1.20247 1.20722 1.19681 1.22426 1.02339 0.81338 0.96577 0.92291 0.90015 0.90745 0.82666 0.77621 0.89180 0.89519 0.90592 0.90665 0.89161 0.89194 0.92126 0.89737 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.54 8.87 59.84 0.53 1.07 16 2 N -0.58 -4.28 3.01 -171.48 -0.52 -4.79 16 3 C 0.46 4.07 7.34 -154.76 -1.14 2.93 16 4 C -0.32 -2.82 9.28 -39.04 -0.36 -3.18 16 5 C 0.39 3.90 8.50 -17.05 -0.14 3.76 16 6 F -0.10 -1.06 17.30 2.25 0.04 -1.02 16 7 N -0.59 -5.93 10.45 -14.98 -0.16 -6.08 16 8 C 0.38 2.92 12.28 -92.21 -1.13 1.79 16 9 N -0.58 -5.01 9.40 -13.84 -0.13 -5.14 16 10 C 0.13 0.97 3.26 -65.78 -0.21 0.76 16 11 H 0.11 0.78 5.81 -51.93 -0.30 0.48 16 12 C -0.14 -0.84 6.46 -24.90 -0.16 -1.00 16 13 C 0.10 0.90 6.49 -3.06 -0.02 0.88 16 14 N -0.63 -7.97 3.33 -170.51 -0.57 -8.54 16 15 C 0.55 9.98 7.87 -10.99 -0.09 9.89 16 16 O -0.51 -11.40 16.12 5.56 0.09 -11.31 16 17 C -0.15 -2.85 5.35 36.00 0.19 -2.66 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 23 Si 0.92 21.04 29.55 -169.99 -5.02 16.01 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.10 1.02 6.49 -2.53 -0.02 1.00 16 28 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 29 H 0.08 0.52 7.58 -51.93 -0.39 0.12 16 30 H 0.07 0.40 6.62 -51.93 -0.34 0.05 16 31 H 0.16 1.19 6.16 -52.49 -0.32 0.87 16 32 H 0.21 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.45 6.75 -51.93 -0.35 0.10 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.07 0.72 6.74 -51.93 -0.35 0.37 16 LS Contribution 362.12 15.07 5.46 5.46 Total: -1.00 -35.27 362.12 -9.62 -44.89 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -4.98 Total: -3.14 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -2.35 Total: 2.56 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.64 Total: -49.64 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.27 -9.62 -44.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095106522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.571 kcal (2) G-P(sol) polarization free energy of solvation -35.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds