Wall clock time and date at job start Tue Mar 31 2020 23:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99404 * 2 1 4 4 O 1.21284 * 119.99597 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00048 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00020 * 359.97438 * 7 6 5 9 9 C 1.38796 * 120.00071 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00312 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99778 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47087 * 90.00200 * 11 9 7 13 13 H 1.48500 * 109.46910 * 210.00115 * 11 9 7 14 14 H 1.48498 * 109.47462 * 329.99873 * 11 9 7 15 15 C 1.46496 * 120.00318 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.28668 * 179.29953 * 15 2 1 17 17 C 1.54257 * 110.32272 * 57.16962 * 15 2 1 18 18 C 1.54377 * 105.06382 * 241.00028 * 17 15 2 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 17 15 20 20 C 1.39160 * 111.00003 * 200.95684 * 19 18 17 21 21 C 1.39206 * 120.06227 * 300.12765 * 20 19 18 22 22 N 1.32007 * 119.93139 * 179.97438 * 21 20 19 23 23 C 1.32396 * 120.05365 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.93929 * 179.97438 * 23 22 21 25 25 C 1.38467 * 120.12702 * 0.02562 * 23 22 21 26 26 N 1.32213 * 120.06800 * 359.67736 * 25 23 22 27 27 C 1.48720 * 104.28820 * 320.57327 * 19 18 17 28 28 H 1.08995 * 109.47582 * 269.99260 * 1 2 3 29 29 H 1.09000 * 109.47707 * 30.00314 * 1 2 3 30 30 H 1.09007 * 109.46636 * 150.00102 * 1 2 3 31 31 H 1.08997 * 109.46944 * 300.00010 * 5 3 2 32 32 H 1.09005 * 109.47158 * 59.99759 * 5 3 2 33 33 H 0.96995 * 119.99799 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.32672 * 359.90498 * 17 15 2 35 35 H 1.09009 * 110.32136 * 122.10705 * 17 15 2 36 36 H 1.08999 * 110.41555 * 142.63458 * 18 17 15 37 37 H 1.09004 * 110.41760 * 264.96131 * 18 17 15 38 38 H 1.08003 * 120.03249 * 0.02634 * 21 20 19 39 39 H 1.07997 * 119.96719 * 179.97438 * 25 23 22 40 40 H 1.09004 * 110.38960 * 280.64066 * 27 19 18 41 41 H 1.08996 * 110.50963 * 158.14509 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 -0.0003 7 6 1.4412 5.2082 -0.0002 8 1 0.3759 5.0305 -0.0001 9 6 1.9278 6.5081 -0.0003 10 7 1.0910 7.5242 -0.0007 11 14 3.7703 6.8156 0.0003 12 1 4.2590 6.8969 -1.3996 13 1 4.0587 8.0931 0.7002 14 1 4.4580 5.7013 0.7007 15 6 2.1976 -1.2686 -0.0006 16 1 3.2719 -1.0847 -0.0130 17 6 1.7863 -2.1242 -1.2165 18 6 1.1873 -3.4139 -0.6154 19 7 0.7413 -3.0202 0.7460 20 6 0.6170 -4.1337 1.5714 21 6 -0.2653 -5.1564 1.2347 22 7 -0.3807 -6.2117 2.0193 23 6 0.3413 -6.2974 3.1258 24 9 0.2210 -7.3782 3.9274 25 6 1.2189 -5.2809 3.4635 26 7 1.3427 -4.2245 2.6782 27 6 1.8120 -2.1110 1.2344 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8908 33 1 1.4312 8.4326 -0.0004 34 1 1.0382 -1.6010 -1.8119 35 1 2.6588 -2.3603 -1.8258 36 1 0.3390 -3.7523 -1.2103 37 1 1.9458 -4.1946 -0.5579 38 1 -0.8541 -5.0870 0.3320 39 1 1.8063 -5.3534 4.3669 40 1 2.6688 -2.6867 1.5844 41 1 1.4340 -1.4686 2.0297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:25 Heat of formation + Delta-G solvation = 4.471892 kcal Electronic energy + Delta-G solvation = -26357.993595 eV Core-core repulsion = 22315.144380 eV Total energy + Delta-G solvation = -4042.849215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.53906 -41.91182 -40.20111 -38.55580 -35.49363 -34.73795 -32.63636 -32.44712 -30.01784 -29.63757 -28.34350 -26.69635 -25.64449 -25.40528 -24.43330 -22.08472 -21.43703 -19.32004 -18.61159 -18.55310 -18.17312 -17.61953 -17.15032 -16.81405 -16.18112 -15.60111 -15.41476 -15.16504 -14.94349 -14.89893 -14.83264 -14.21699 -14.02494 -13.71002 -13.36097 -13.10433 -12.94373 -12.78877 -12.56865 -12.37722 -12.32132 -12.31121 -12.03637 -11.84633 -11.71752 -11.26850 -11.25434 -11.01942 -10.60472 -10.50999 -9.86941 -9.86177 -9.50988 -9.01439 -8.86078 -8.66120 -8.50540 -6.93366 -6.29872 -4.01769 0.03059 0.38365 2.66604 2.68133 2.83890 2.86455 3.01836 3.15742 3.32088 3.49446 3.52786 3.58417 3.72378 4.04541 4.21102 4.31995 4.37028 4.45343 4.62069 4.63382 4.82070 4.84134 4.96341 5.03309 5.09121 5.11848 5.24955 5.32034 5.41305 5.42670 5.51765 5.60067 5.70933 5.76980 5.81353 5.92307 6.00490 6.24260 6.53931 6.58102 7.00052 7.39831 7.93151 8.38088 8.40712 9.16297 10.79305 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002053 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.730878 B =13637.239875 C =13780.209657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.613 5.613 3 C 0.533 3.467 4 O -0.520 6.520 5 C -0.120 4.120 6 S -0.144 6.144 7 C -0.520 4.520 8 H 0.088 0.912 9 C 0.095 3.905 10 N -0.880 5.880 11 Si 0.857 3.143 12 H -0.267 1.267 13 H -0.274 1.274 14 H -0.235 1.235 15 C 0.136 3.864 16 H 0.115 0.885 17 C -0.136 4.136 18 C 0.039 3.961 19 N -0.445 5.445 20 C 0.250 3.750 21 C 0.086 3.914 22 N -0.449 5.449 23 C 0.223 3.777 24 F -0.104 7.104 25 C 0.072 3.928 26 N -0.447 5.447 27 C 0.035 3.965 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.271 0.729 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.080 0.920 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 -28.658 1.261 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.348 5.348 3 C 0.321 3.679 4 O -0.394 6.394 5 C -0.270 4.270 6 S 0.082 5.918 7 C -0.668 4.668 8 H 0.106 0.894 9 C -0.114 4.114 10 N -0.517 5.517 11 Si 0.682 3.318 12 H -0.192 1.192 13 H -0.200 1.200 14 H -0.159 1.159 15 C 0.031 3.969 16 H 0.133 0.867 17 C -0.175 4.175 18 C -0.087 4.087 19 N -0.164 5.164 20 C 0.014 3.986 21 C -0.080 4.080 22 N -0.168 5.168 23 C 0.068 3.932 24 F -0.083 7.083 25 C -0.091 4.091 26 N -0.165 5.165 27 C -0.092 4.092 28 H 0.073 0.927 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.078 0.922 38 H 0.199 0.801 39 H 0.200 0.800 40 H 0.098 0.902 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.330 -28.195 1.270 28.255 hybrid contribution -0.453 -0.199 0.339 0.600 sum -1.783 -28.394 1.610 28.495 Atomic orbital electron populations 1.21752 0.79092 1.03147 1.02145 1.47843 1.07067 1.04744 1.75151 1.20361 0.87908 0.84671 0.74910 1.90685 1.13751 1.86800 1.48174 1.23305 1.03043 0.95012 1.05668 1.84783 1.12000 0.97583 1.97421 1.22300 0.94856 0.90870 1.58769 0.89386 1.24717 0.98540 0.94891 0.93202 1.69937 1.34788 0.98877 1.48056 0.86731 0.85367 0.79819 0.79911 1.19227 1.19963 1.15926 1.21765 0.98780 0.83343 0.92991 0.86678 1.22796 1.02151 0.94519 0.98048 1.23326 1.00152 0.98048 0.87143 1.62617 1.41928 1.09268 1.02556 1.21145 0.93246 0.91324 0.92843 1.23145 0.97420 0.87705 0.99686 1.67726 1.21107 1.24792 1.03184 1.19020 0.97643 0.86486 0.90082 1.91660 1.94739 1.52321 1.69591 1.23479 0.96951 0.88419 1.00230 1.68492 1.20610 1.22652 1.04772 1.23549 0.93027 0.94513 0.98122 0.92652 0.90839 0.90618 0.88482 0.88459 0.91943 0.89235 0.89510 0.88468 0.92192 0.80088 0.79985 0.90193 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.28 59.85 0.56 1.34 16 2 N -0.61 -7.52 2.74 -172.35 -0.47 -8.00 16 3 C 0.53 9.14 7.69 -10.99 -0.08 9.05 16 4 O -0.52 -10.71 15.22 5.55 0.08 -10.63 16 5 C -0.12 -2.27 4.71 36.00 0.17 -2.10 16 6 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 7 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 10 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 11 Si 0.86 21.62 27.74 -169.99 -4.71 16.90 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 15 C 0.14 1.38 3.46 -66.55 -0.23 1.15 16 16 H 0.12 1.38 6.96 -51.93 -0.36 1.02 16 17 C -0.14 -0.95 6.17 -25.35 -0.16 -1.10 16 18 C 0.04 0.21 5.91 -2.18 -0.01 0.20 16 19 N -0.45 -3.32 5.08 -168.50 -0.86 -4.18 16 20 C 0.25 1.99 6.23 -154.62 -0.96 1.03 16 21 C 0.09 0.62 10.55 -17.12 -0.18 0.43 16 22 N -0.45 -4.05 10.50 -13.24 -0.14 -4.19 16 23 C 0.22 1.88 8.43 -17.22 -0.15 1.74 16 24 F -0.10 -0.89 17.29 2.25 0.04 -0.85 16 25 C 0.07 0.52 11.20 -17.30 -0.19 0.33 16 26 N -0.45 -3.92 8.66 -12.17 -0.11 -4.02 16 27 C 0.04 0.32 5.12 -2.09 -0.01 0.31 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.72 6.44 -51.93 -0.33 0.39 16 30 H 0.08 0.58 6.56 -51.93 -0.34 0.24 16 31 H 0.10 1.70 7.40 -51.92 -0.38 1.32 16 32 H 0.10 1.74 8.11 -51.91 -0.42 1.32 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.09 0.63 6.87 -51.93 -0.36 0.28 16 35 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.10 0.34 8.02 -51.93 -0.42 -0.08 16 37 H 0.06 0.31 7.98 -51.93 -0.41 -0.10 16 38 H 0.18 0.80 7.88 -52.48 -0.41 0.38 16 39 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.08 0.75 7.26 -51.93 -0.38 0.37 16 41 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 LS Contribution 357.21 15.07 5.38 5.38 Total: -1.00 -34.42 357.21 -8.12 -42.55 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.08 Total: -2.32 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.04 Total: 0.54 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.80 Total: -45.98 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.04 Total: -0.85 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.90 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.42 -8.12 -42.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.018 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds