Wall clock time and date at job start Tue Mar 31 2020 23:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99404 * 2 1 4 4 O 1.21284 * 119.99597 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00280 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.47238 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00048 * 179.97438 * 6 5 3 8 8 H 1.07997 * 120.00020 * 359.97438 * 7 6 5 9 9 C 1.38796 * 120.00071 * 179.97438 * 7 6 5 10 10 N 1.31631 * 120.00312 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99778 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47087 * 90.00200 * 11 9 7 13 13 H 1.48500 * 109.46910 * 210.00115 * 11 9 7 14 14 H 1.48498 * 109.47462 * 329.99873 * 11 9 7 15 15 C 1.46496 * 120.00318 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.28668 * 179.29953 * 15 2 1 17 17 C 1.54257 * 110.32272 * 57.16962 * 15 2 1 18 18 C 1.54377 * 105.06382 * 241.00028 * 17 15 2 19 19 N 1.48567 * 104.59159 * 23.85582 * 18 17 15 20 20 C 1.39160 * 111.00003 * 200.95684 * 19 18 17 21 21 C 1.39206 * 120.06227 * 300.12765 * 20 19 18 22 22 N 1.32007 * 119.93139 * 179.97438 * 21 20 19 23 23 C 1.32396 * 120.05365 * 0.02562 * 22 21 20 24 24 F 1.35105 * 119.93929 * 179.97438 * 23 22 21 25 25 C 1.38467 * 120.12702 * 0.02562 * 23 22 21 26 26 N 1.32213 * 120.06800 * 359.67736 * 25 23 22 27 27 C 1.48720 * 104.28820 * 320.57327 * 19 18 17 28 28 H 1.08995 * 109.47582 * 269.99260 * 1 2 3 29 29 H 1.09000 * 109.47707 * 30.00314 * 1 2 3 30 30 H 1.09007 * 109.46636 * 150.00102 * 1 2 3 31 31 H 1.08997 * 109.46944 * 300.00010 * 5 3 2 32 32 H 1.09005 * 109.47158 * 59.99759 * 5 3 2 33 33 H 0.96995 * 119.99799 * 179.97438 * 10 9 7 34 34 H 1.08995 * 110.32672 * 359.90498 * 17 15 2 35 35 H 1.09009 * 110.32136 * 122.10705 * 17 15 2 36 36 H 1.08999 * 110.41555 * 142.63458 * 18 17 15 37 37 H 1.09004 * 110.41760 * 264.96131 * 18 17 15 38 38 H 1.08003 * 120.03249 * 0.02634 * 21 20 19 39 39 H 1.07997 * 119.96719 * 179.97438 * 25 23 22 40 40 H 1.09004 * 110.38960 * 280.64066 * 27 19 18 41 41 H 1.08996 * 110.50963 * 158.14509 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 -0.0003 7 6 1.4412 5.2082 -0.0002 8 1 0.3759 5.0305 -0.0001 9 6 1.9278 6.5081 -0.0003 10 7 1.0910 7.5242 -0.0007 11 14 3.7703 6.8156 0.0003 12 1 4.2590 6.8969 -1.3996 13 1 4.0587 8.0931 0.7002 14 1 4.4580 5.7013 0.7007 15 6 2.1976 -1.2686 -0.0006 16 1 3.2719 -1.0847 -0.0130 17 6 1.7863 -2.1242 -1.2165 18 6 1.1873 -3.4139 -0.6154 19 7 0.7413 -3.0202 0.7460 20 6 0.6170 -4.1337 1.5714 21 6 -0.2653 -5.1564 1.2347 22 7 -0.3807 -6.2117 2.0193 23 6 0.3413 -6.2974 3.1258 24 9 0.2210 -7.3782 3.9274 25 6 1.2189 -5.2809 3.4635 26 7 1.3427 -4.2245 2.6782 27 6 1.8120 -2.1110 1.2344 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5139 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8908 33 1 1.4312 8.4326 -0.0004 34 1 1.0382 -1.6010 -1.8119 35 1 2.6588 -2.3603 -1.8258 36 1 0.3390 -3.7523 -1.2103 37 1 1.9458 -4.1946 -0.5579 38 1 -0.8541 -5.0870 0.3320 39 1 1.8063 -5.3534 4.3669 40 1 2.6688 -2.6867 1.5844 41 1 1.4340 -1.4686 2.0297 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:24 Heat of formation + Delta-G solvation = -19.689186 kcal Electronic energy + Delta-G solvation = -26359.041298 eV Core-core repulsion = 22315.144380 eV Total energy + Delta-G solvation = -4043.896918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.15823 -42.51085 -41.19151 -39.50652 -36.47453 -35.40519 -34.66437 -33.40395 -31.10460 -30.22876 -29.34451 -27.85198 -27.57725 -26.03966 -25.05971 -22.73788 -22.29188 -20.44405 -19.62509 -19.22196 -19.17434 -18.74791 -18.22474 -17.50633 -17.22694 -17.04430 -16.78493 -16.16026 -15.96178 -15.62248 -15.52099 -15.34428 -14.95309 -14.85552 -14.65104 -14.45673 -13.98091 -13.68900 -13.55570 -13.36433 -13.24544 -13.09383 -13.03584 -12.95495 -12.92125 -12.63677 -12.46796 -12.39235 -11.91744 -11.85875 -11.16401 -11.07435 -10.89428 -10.51577 -10.44176 -9.72503 -9.41807 -8.99194 -8.50798 -6.21536 -0.52951 -0.19400 0.98776 1.31775 1.46506 1.51888 1.55008 2.07229 2.12027 2.25584 2.28125 2.44003 2.69588 2.87379 2.96278 3.19031 3.39741 3.57312 3.69839 3.80246 3.91844 4.10686 4.17579 4.18169 4.26266 4.37049 4.39721 4.48256 4.61307 4.66544 4.70019 4.76782 4.90782 4.99818 5.04227 5.12342 5.26044 5.59347 5.64997 5.71564 6.02121 6.12253 6.24972 6.43402 6.94414 7.09063 8.61475 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.002053 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.730878 B =13637.239875 C =13780.209657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.597 5.597 3 C 0.535 3.465 4 O -0.562 6.562 5 C -0.105 4.105 6 S -0.177 6.177 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.045 3.955 10 N -0.917 5.917 11 Si 0.915 3.085 12 H -0.262 1.262 13 H -0.260 1.260 14 H -0.237 1.237 15 C 0.130 3.870 16 H 0.093 0.907 17 C -0.128 4.128 18 C 0.043 3.957 19 N -0.442 5.442 20 C 0.245 3.755 21 C 0.094 3.906 22 N -0.470 5.470 23 C 0.211 3.789 24 F -0.109 7.109 25 C 0.076 3.924 26 N -0.469 5.469 27 C 0.046 3.954 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.277 0.723 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.211 0.789 39 H 0.206 0.794 40 H 0.077 0.923 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -30.682 0.514 30.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.330 5.330 3 C 0.322 3.678 4 O -0.441 6.441 5 C -0.256 4.256 6 S 0.049 5.951 7 C -0.675 4.675 8 H 0.081 0.919 9 C -0.161 4.161 10 N -0.555 5.555 11 Si 0.736 3.264 12 H -0.186 1.186 13 H -0.185 1.185 14 H -0.161 1.161 15 C 0.026 3.974 16 H 0.111 0.889 17 C -0.167 4.167 18 C -0.082 4.082 19 N -0.160 5.160 20 C 0.009 3.991 21 C -0.071 4.071 22 N -0.190 5.190 23 C 0.056 3.944 24 F -0.088 7.088 25 C -0.086 4.086 26 N -0.188 5.188 27 C -0.082 4.082 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.228 0.772 39 H 0.223 0.777 40 H 0.095 0.905 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.694 -30.269 0.530 30.321 hybrid contribution -0.484 0.287 0.576 0.805 sum -2.179 -29.982 1.105 30.081 Atomic orbital electron populations 1.21979 0.77055 1.04603 1.02901 1.47809 1.08248 1.04064 1.72866 1.20015 0.87238 0.85306 0.75239 1.90672 1.15282 1.87363 1.50746 1.23279 1.01719 0.93601 1.06995 1.84698 1.13839 0.98971 1.97561 1.22443 0.94383 0.92476 1.58155 0.91943 1.25569 1.02744 0.94808 0.92958 1.70015 1.36748 0.99512 1.49175 0.85863 0.80241 0.80020 0.80226 1.18623 1.18453 1.16110 1.21918 0.97470 0.82653 0.95360 0.88886 1.22761 1.02818 0.94498 0.96608 1.23454 1.01519 0.97225 0.86002 1.62641 1.41041 1.09042 1.03317 1.21298 0.93414 0.91582 0.92770 1.23538 0.96948 0.86606 1.00048 1.67742 1.21737 1.25727 1.03759 1.19167 0.98210 0.86739 0.90256 1.91642 1.94826 1.52605 1.69767 1.23775 0.96640 0.87572 1.00644 1.68503 1.21447 1.23338 1.05475 1.23291 0.93431 0.94419 0.97021 0.92217 0.90806 0.87787 0.86876 0.87406 0.91396 0.88654 0.88608 0.85393 0.91560 0.77220 0.77707 0.90488 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 9.28 127.77 1.19 2.46 16 2 N -0.60 -13.73 2.74 -817.59 -2.24 -15.97 16 3 C 0.53 17.97 7.69 87.66 0.67 18.64 16 4 O -0.56 -23.30 15.22 -3.04 -0.05 -23.34 16 5 C -0.11 -3.92 4.71 71.23 0.34 -3.58 16 6 S -0.18 -8.89 18.55 -56.49 -1.05 -9.93 16 7 C -0.53 -30.46 10.04 67.95 0.68 -29.78 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 C 0.04 2.60 5.50 84.86 0.47 3.07 16 10 N -0.92 -55.55 13.97 21.65 0.30 -55.25 16 11 Si 0.91 44.81 27.74 68.60 1.90 46.71 16 12 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 14 H -0.24 -11.61 6.74 99.48 0.67 -10.94 16 15 C 0.13 2.44 3.46 45.89 0.16 2.59 16 16 H 0.09 2.21 6.96 -2.39 -0.02 2.19 16 17 C -0.13 -1.39 6.17 31.49 0.19 -1.20 16 18 C 0.04 0.30 5.91 86.45 0.51 0.81 16 19 N -0.44 -5.34 5.08 -687.00 -3.49 -8.83 16 20 C 0.24 3.33 6.23 132.95 0.83 4.16 16 21 C 0.09 1.08 10.55 84.90 0.90 1.98 16 22 N -0.47 -7.64 10.50 -195.82 -2.06 -9.70 16 23 C 0.21 3.31 8.43 84.66 0.71 4.02 16 24 F -0.11 -1.79 17.29 44.97 0.78 -1.01 16 25 C 0.08 1.00 11.20 84.69 0.95 1.95 16 26 N -0.47 -7.51 8.66 -192.40 -1.67 -9.17 16 27 C 0.05 0.78 5.12 86.42 0.44 1.23 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.26 6.44 -2.39 -0.02 1.25 16 30 H 0.10 1.18 6.56 -2.38 -0.02 1.17 16 31 H 0.11 3.84 7.40 -2.40 -0.02 3.83 16 32 H 0.11 3.78 8.11 -2.39 -0.02 3.76 16 33 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.09 0.98 6.87 -2.39 -0.02 0.96 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.13 0.21 8.02 -2.39 -0.02 0.19 16 37 H 0.07 0.44 7.98 -2.39 -0.02 0.43 16 38 H 0.21 0.99 7.88 -2.91 -0.02 0.96 16 39 H 0.21 1.49 8.06 -2.91 -0.02 1.47 16 40 H 0.08 1.37 7.26 -2.38 -0.02 1.35 16 41 H 0.08 1.66 8.05 -2.39 -0.02 1.64 16 Total: -1.00 -76.02 357.21 1.50 -74.52 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 1.03 Total: 5.62 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 8.04 Total: 6.36 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -9.15 Total: -98.91 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.90 Total: 46.71 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.05 Total: -9.93 kcal Total: -76.02 1.50 -74.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.833 kcal (2) G-P(sol) polarization free energy of solvation -76.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds