Wall clock time and date at job start Tue Mar 31 2020 23:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99940 * 2 1 4 4 O 1.21279 * 119.99780 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99646 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.46659 * 179.97438 * 5 3 2 7 7 C 1.76207 * 99.99946 * 179.97438 * 6 5 3 8 8 H 1.08007 * 119.99694 * 0.02562 * 7 6 5 9 9 C 1.38800 * 120.00200 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47286 * 89.99869 * 11 9 7 13 13 H 1.48500 * 109.46978 * 210.00005 * 11 9 7 14 14 H 1.48505 * 109.46968 * 330.00252 * 11 9 7 15 15 C 1.46503 * 120.00083 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.87386 * 182.39074 * 15 2 1 17 17 C 1.55137 * 110.98816 * 58.55051 * 15 2 1 18 18 C 1.54321 * 103.02090 * 206.21268 * 17 15 2 19 19 N 1.47445 * 107.22729 * 22.28601 * 18 17 15 20 20 C 1.39119 * 111.00210 * 123.25904 * 19 18 17 21 21 N 1.32557 * 120.10710 * 239.89579 * 20 19 18 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 C 1.47838 * 108.56950 * 0.98653 * 19 18 17 28 28 H 1.09005 * 109.47156 * 269.99967 * 1 2 3 29 29 H 1.08996 * 109.47413 * 29.99850 * 1 2 3 30 30 H 1.08999 * 109.47045 * 150.00121 * 1 2 3 31 31 H 1.08992 * 109.47175 * 299.99730 * 5 3 2 32 32 H 1.09006 * 109.47340 * 60.00347 * 5 3 2 33 33 H 0.97003 * 119.99657 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.70920 * 87.83486 * 17 15 2 35 35 H 1.09001 * 110.70605 * 324.59849 * 17 15 2 36 36 H 1.08990 * 109.89017 * 262.87636 * 18 17 15 37 37 H 1.08997 * 110.02124 * 141.75984 * 18 17 15 38 38 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 40 40 H 1.09002 * 110.37797 * 94.73605 * 27 19 18 41 41 H 1.09007 * 110.37700 * 217.07728 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8480 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3760 5.0304 0.0011 9 6 1.9280 6.5081 0.0009 10 7 3.2264 6.7247 0.0013 11 14 0.7406 7.9501 0.0014 12 1 0.4264 8.3321 1.4016 13 1 1.3616 9.1030 -0.6989 14 1 -0.5104 7.5613 -0.6981 15 6 2.1975 -1.2687 0.0006 16 1 3.2729 -1.0963 0.0430 17 6 1.8208 -2.1284 -1.2347 18 6 2.0938 -3.5686 -0.7523 19 7 2.0468 -3.5519 0.7213 20 6 1.1052 -4.4571 1.2004 21 7 0.0898 -4.0319 1.9389 22 6 -0.8041 -4.8956 2.3924 23 6 -0.6824 -6.2390 2.0981 24 7 0.3289 -6.6705 1.3613 25 6 1.2267 -5.8162 0.9049 26 9 2.2588 -6.2561 0.1524 27 6 1.7347 -2.1772 1.1668 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8909 33 1 3.5665 7.6331 0.0008 34 1 2.4558 -1.8800 -2.0852 35 1 0.7684 -1.9995 -1.4875 36 1 3.0790 -3.8917 -1.0883 37 1 1.3303 -4.2430 -1.1400 38 1 -1.6309 -4.5488 2.9943 39 1 -1.4171 -6.9394 2.4668 40 1 0.6631 -2.0659 1.3322 41 1 2.2867 -1.9383 2.0759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102669993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:30 Heat of formation + Delta-G solvation = 6.094107 kcal Electronic energy + Delta-G solvation = -26621.160099 eV Core-core repulsion = 22578.381229 eV Total energy + Delta-G solvation = -4042.778870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.46511 -41.79276 -40.13070 -38.62006 -35.55522 -34.56655 -32.47254 -32.44751 -30.05904 -29.66551 -28.26518 -26.89889 -25.52676 -24.97909 -24.53423 -21.86472 -21.51549 -19.36615 -18.62028 -18.46007 -17.94248 -17.72750 -17.13029 -16.73994 -15.95108 -15.69392 -15.44548 -15.15751 -14.82312 -14.74912 -14.38637 -14.15086 -13.94923 -13.79751 -13.55199 -13.28303 -13.08093 -12.78266 -12.59375 -12.34084 -12.26098 -12.18133 -12.04835 -11.68601 -11.57851 -11.08216 -11.04766 -10.93745 -10.77805 -10.30667 -9.84855 -9.82608 -9.44324 -9.08503 -8.75663 -8.61951 -8.25434 -6.52656 -6.23539 -3.94446 0.09120 0.42420 2.51754 2.82076 2.89858 2.95518 3.16865 3.20836 3.24859 3.28704 3.51928 3.62482 3.77575 4.14435 4.18255 4.32256 4.45351 4.57611 4.60239 4.77498 4.84777 4.93809 5.03912 5.06711 5.11633 5.21060 5.32282 5.45456 5.49118 5.53735 5.62094 5.67777 5.71994 5.86115 5.90553 5.96438 6.09347 6.34780 6.54552 6.60774 7.06247 7.42755 7.57583 8.33108 8.46861 9.21732 10.83861 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.002128 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.635816 B =13155.795466 C =13748.930868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.614 5.614 3 C 0.536 3.464 4 O -0.512 6.512 5 C -0.149 4.149 6 S -0.061 6.061 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.073 3.927 10 N -0.867 5.867 11 Si 0.919 3.081 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.136 3.864 16 H 0.121 0.879 17 C -0.153 4.153 18 C 0.050 3.950 19 N -0.457 5.457 20 C 0.255 3.745 21 N -0.452 5.452 22 C 0.071 3.929 23 C 0.050 3.950 24 N -0.450 5.450 25 C 0.250 3.750 26 F -0.095 7.095 27 C 0.033 3.967 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.268 0.732 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.092 0.908 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.921 -26.056 1.730 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.350 5.350 3 C 0.324 3.676 4 O -0.386 6.386 5 C -0.300 4.300 6 S 0.166 5.834 7 C -0.683 4.683 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.030 3.970 16 H 0.139 0.861 17 C -0.192 4.192 18 C -0.076 4.076 19 N -0.175 5.175 20 C 0.017 3.983 21 N -0.171 5.171 22 C -0.089 4.089 23 C -0.109 4.109 24 N -0.169 5.169 25 C 0.088 3.912 26 F -0.074 7.074 27 C -0.094 4.094 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.119 0.881 37 H 0.082 0.918 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.110 0.890 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.400 -26.014 1.856 27.399 hybrid contribution -2.738 0.830 -0.235 2.871 sum -11.138 -25.183 1.620 27.584 Atomic orbital electron populations 1.21769 0.79724 1.03060 1.02024 1.47697 1.06686 1.04894 1.75694 1.20394 0.87954 0.84440 0.74770 1.90700 1.13714 1.86647 1.47514 1.23555 1.04580 0.97028 1.04816 1.85422 1.07986 0.93330 1.96712 1.22848 0.94274 0.92172 1.59024 0.90937 1.24996 0.95683 0.98393 0.94534 1.70019 1.11737 1.21686 1.46781 0.86166 0.80243 0.80715 0.78360 1.20257 1.20747 1.19708 1.22058 0.99302 0.82916 0.92718 0.86122 1.23189 1.03084 0.93390 0.99541 1.22975 1.03846 0.97720 0.83022 1.60722 1.38675 1.07266 1.10826 1.20804 0.90135 0.90851 0.96474 1.68444 1.00691 1.37497 1.10446 1.23724 0.97492 0.90573 0.97090 1.23460 0.95492 0.96051 0.95917 1.67743 1.02281 1.37894 1.08998 1.18538 0.88254 0.88221 0.96138 1.91668 1.53469 1.90148 1.72165 1.23481 1.03228 0.83583 0.99148 0.92402 0.90294 0.91601 0.89174 0.89131 0.92164 0.88944 0.90396 0.88112 0.91767 0.80205 0.80224 0.89034 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 8.92 59.84 0.53 1.30 16 2 N -0.61 -8.22 2.91 -171.50 -0.50 -8.72 16 3 C 0.54 9.83 7.69 -10.98 -0.08 9.75 16 4 O -0.51 -11.36 15.24 5.56 0.08 -11.28 16 5 C -0.15 -2.94 4.71 36.00 0.17 -2.77 16 6 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 7 C -0.53 -15.03 9.50 30.94 0.29 -14.73 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 10 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 11 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 C 0.14 1.60 3.45 -65.80 -0.23 1.38 16 16 H 0.12 1.70 7.01 -51.93 -0.36 1.33 16 17 C -0.15 -1.40 6.50 -24.91 -0.16 -1.56 16 18 C 0.05 0.43 5.77 -2.83 -0.02 0.41 16 19 N -0.46 -4.69 5.14 -169.76 -0.87 -5.57 16 20 C 0.26 2.56 6.15 -154.59 -0.95 1.61 16 21 N -0.45 -4.06 8.35 -12.17 -0.10 -4.17 16 22 C 0.07 0.41 11.21 -17.41 -0.20 0.22 16 23 C 0.05 0.29 11.21 -17.39 -0.19 0.10 16 24 N -0.45 -4.21 10.50 -13.24 -0.14 -4.35 16 25 C 0.25 2.56 7.83 -16.93 -0.13 2.43 16 26 F -0.10 -1.02 16.12 2.25 0.04 -0.98 16 27 C 0.03 0.35 5.95 -2.31 -0.01 0.34 16 28 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 29 H 0.08 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 31 H 0.09 1.63 7.40 -51.92 -0.38 1.25 16 32 H 0.09 1.66 8.11 -51.91 -0.42 1.24 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.66 6.30 -51.93 -0.33 0.33 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.51 7.09 -51.93 -0.37 0.15 16 38 H 0.18 0.39 8.06 -52.49 -0.42 -0.03 16 39 H 0.18 0.37 8.06 -52.49 -0.42 -0.06 16 40 H 0.09 0.95 5.49 -51.93 -0.29 0.66 16 41 H 0.09 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 356.21 15.07 5.37 5.37 Total: -1.00 -35.35 356.21 -8.59 -43.94 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.89 Total: -1.77 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -1.08 Total: 0.44 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -0.88 Total: -48.01 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.35 -8.59 -43.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.029 kcal (2) G-P(sol) polarization free energy of solvation -35.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds