Wall clock time and date at job start Tue Mar 31 2020 23:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 119.99940 * 2 1 4 4 O 1.21279 * 119.99780 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99646 * 0.02562 * 3 2 1 6 6 S 1.81002 * 109.46659 * 179.97438 * 5 3 2 7 7 C 1.76207 * 99.99946 * 179.97438 * 6 5 3 8 8 H 1.08007 * 119.99694 * 0.02562 * 7 6 5 9 9 C 1.38800 * 120.00200 * 180.02562 * 7 6 5 10 10 N 1.31629 * 119.99726 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00092 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47286 * 89.99869 * 11 9 7 13 13 H 1.48500 * 109.46978 * 210.00005 * 11 9 7 14 14 H 1.48505 * 109.46968 * 330.00252 * 11 9 7 15 15 C 1.46503 * 120.00083 * 179.97438 * 2 1 3 16 16 H 1.09003 * 110.87386 * 182.39074 * 15 2 1 17 17 C 1.55137 * 110.98816 * 58.55051 * 15 2 1 18 18 C 1.54321 * 103.02090 * 206.21268 * 17 15 2 19 19 N 1.47445 * 107.22729 * 22.28601 * 18 17 15 20 20 C 1.39119 * 111.00210 * 123.25904 * 19 18 17 21 21 N 1.32557 * 120.10710 * 239.89579 * 20 19 18 22 22 C 1.32313 * 119.94358 * 179.97438 * 21 20 19 23 23 C 1.38064 * 120.16452 * 359.97438 * 22 21 20 24 24 N 1.32354 * 120.21924 * 0.02562 * 23 22 21 25 25 C 1.32066 * 120.05744 * 0.02562 * 24 23 22 26 26 F 1.35096 * 120.08422 * 180.02562 * 25 24 23 27 27 C 1.47838 * 108.56950 * 0.98653 * 19 18 17 28 28 H 1.09005 * 109.47156 * 269.99967 * 1 2 3 29 29 H 1.08996 * 109.47413 * 29.99850 * 1 2 3 30 30 H 1.08999 * 109.47045 * 150.00121 * 1 2 3 31 31 H 1.08992 * 109.47175 * 299.99730 * 5 3 2 32 32 H 1.09006 * 109.47340 * 60.00347 * 5 3 2 33 33 H 0.97003 * 119.99657 * 179.97438 * 10 9 7 34 34 H 1.09004 * 110.70920 * 87.83486 * 17 15 2 35 35 H 1.09001 * 110.70605 * 324.59849 * 17 15 2 36 36 H 1.08990 * 109.89017 * 262.87636 * 18 17 15 37 37 H 1.08997 * 110.02124 * 141.75984 * 18 17 15 38 38 H 1.07991 * 119.91942 * 179.97438 * 22 21 20 39 39 H 1.07995 * 119.88791 * 180.28255 * 23 22 21 40 40 H 1.09002 * 110.37797 * 94.73605 * 27 19 18 41 41 H 1.09007 * 110.37700 * 217.07728 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 16 2.5615 3.8480 0.0012 7 6 1.4413 5.2082 0.0010 8 1 0.3760 5.0304 0.0011 9 6 1.9280 6.5081 0.0009 10 7 3.2264 6.7247 0.0013 11 14 0.7406 7.9501 0.0014 12 1 0.4264 8.3321 1.4016 13 1 1.3616 9.1030 -0.6989 14 1 -0.5104 7.5613 -0.6981 15 6 2.1975 -1.2687 0.0006 16 1 3.2729 -1.0963 0.0430 17 6 1.8208 -2.1284 -1.2347 18 6 2.0938 -3.5686 -0.7523 19 7 2.0468 -3.5519 0.7213 20 6 1.1052 -4.4571 1.2004 21 7 0.0898 -4.0319 1.9389 22 6 -0.8041 -4.8956 2.3924 23 6 -0.6824 -6.2390 2.0981 24 7 0.3289 -6.6705 1.3613 25 6 1.2267 -5.8162 0.9049 26 9 2.2588 -6.2561 0.1524 27 6 1.7347 -2.1772 1.1668 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 0.7583 2.5302 -0.8891 32 1 0.7589 2.5298 0.8909 33 1 3.5665 7.6331 0.0008 34 1 2.4558 -1.8800 -2.0852 35 1 0.7684 -1.9995 -1.4875 36 1 3.0790 -3.8917 -1.0883 37 1 1.3303 -4.2430 -1.1400 38 1 -1.6309 -4.5488 2.9943 39 1 -1.4171 -6.9394 2.4668 40 1 0.6631 -2.0659 1.3322 41 1 2.2867 -1.9383 2.0759 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102669993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:30 Heat of formation + Delta-G solvation = -19.305926 kcal Electronic energy + Delta-G solvation = -26622.261527 eV Core-core repulsion = 22578.381229 eV Total energy + Delta-G solvation = -4043.880298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17188 -42.43763 -41.19023 -39.67937 -36.64950 -35.27280 -34.57746 -33.28099 -31.19094 -30.39222 -29.36994 -27.85970 -27.63669 -25.69622 -25.15375 -22.59854 -22.55722 -20.54169 -19.64446 -19.26636 -19.11608 -18.74464 -18.21646 -17.62582 -16.90765 -16.85531 -16.71480 -16.63150 -16.08287 -15.66585 -15.37570 -15.04629 -14.76806 -14.74901 -14.53569 -14.39462 -14.24495 -14.21234 -13.58494 -13.49109 -13.22931 -13.13843 -12.94325 -12.88901 -12.87073 -12.62582 -12.56926 -12.30015 -11.80111 -11.70603 -11.13579 -10.98850 -10.92095 -10.41279 -10.25924 -9.76564 -9.39139 -8.66903 -8.33925 -6.12250 -0.47943 -0.16156 1.23335 1.43229 1.44301 1.52042 1.55774 1.85019 2.13599 2.27837 2.32051 2.58137 3.00345 3.04470 3.12671 3.25102 3.37732 3.52354 3.73565 3.86866 3.91488 4.02544 4.12787 4.14897 4.21150 4.28060 4.45232 4.46666 4.51396 4.60416 4.66274 4.74199 4.83262 4.93742 5.00649 5.10389 5.20475 5.42582 5.50047 5.68444 6.03215 6.19306 6.21422 6.49484 7.07314 7.09169 8.75264 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028930 B = 0.002128 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.635816 B =13155.795466 C =13748.930868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.599 5.599 3 C 0.535 3.465 4 O -0.563 6.563 5 C -0.122 4.122 6 S -0.155 6.155 7 C -0.543 4.543 8 H 0.084 0.916 9 C 0.012 3.988 10 N -0.912 5.912 11 Si 0.999 3.001 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.257 1.257 15 C 0.130 3.870 16 H 0.091 0.909 17 C -0.141 4.141 18 C 0.054 3.946 19 N -0.470 5.470 20 C 0.240 3.760 21 N -0.468 5.468 22 C 0.083 3.917 23 C 0.063 3.937 24 N -0.472 5.472 25 C 0.226 3.774 26 F -0.108 7.108 27 C 0.047 3.953 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.223 0.777 39 H 0.222 0.778 40 H 0.101 0.899 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.037 -27.251 2.229 31.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.332 5.332 3 C 0.323 3.677 4 O -0.441 6.441 5 C -0.273 4.273 6 S 0.072 5.928 7 C -0.691 4.691 8 H 0.102 0.898 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.204 1.204 14 H -0.180 1.180 15 C 0.025 3.975 16 H 0.109 0.891 17 C -0.180 4.180 18 C -0.071 4.071 19 N -0.188 5.188 20 C 0.004 3.996 21 N -0.188 5.188 22 C -0.078 4.078 23 C -0.097 4.097 24 N -0.192 5.192 25 C 0.066 3.934 26 F -0.087 7.087 27 C -0.080 4.080 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.239 0.761 39 H 0.239 0.761 40 H 0.119 0.881 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.529 -27.259 2.333 30.091 hybrid contribution -1.615 0.980 -0.291 1.911 sum -14.143 -26.279 2.042 29.913 Atomic orbital electron populations 1.22086 0.76999 1.04678 1.03543 1.47614 1.08241 1.03852 1.73487 1.20183 0.87271 0.85362 0.74909 1.90687 1.15720 1.87351 1.50310 1.23365 1.02673 0.94609 1.06611 1.85633 1.12702 0.97387 1.97038 1.23186 0.94628 0.92525 1.58760 0.89770 1.26144 0.97588 1.01748 0.93793 1.70191 1.14143 1.22443 1.48056 0.84947 0.77918 0.76296 0.78782 1.19334 1.20440 1.18034 1.22084 0.97724 0.82591 0.95100 0.89095 1.23118 1.03931 0.92856 0.98059 1.22969 1.04318 0.97373 0.82446 1.60692 1.39697 1.06836 1.11568 1.20711 0.90843 0.90539 0.97474 1.68457 1.01093 1.38651 1.10550 1.24472 0.97216 0.90313 0.95808 1.24246 0.94651 0.97059 0.93761 1.67797 1.03109 1.38321 1.09964 1.18604 0.88839 0.88543 0.97397 1.91623 1.54163 1.90276 1.72676 1.23254 1.03281 0.83783 0.97727 0.90890 0.89862 0.88875 0.87093 0.87269 0.92039 0.88965 0.88801 0.88030 0.90805 0.76108 0.76127 0.88077 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 8.92 127.77 1.14 2.29 16 2 N -0.60 -15.42 2.91 -814.89 -2.37 -17.79 16 3 C 0.53 19.77 7.69 87.66 0.67 20.44 16 4 O -0.56 -26.17 15.24 -3.02 -0.05 -26.21 16 5 C -0.12 -4.74 4.71 71.23 0.34 -4.40 16 6 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 7 C -0.54 -30.64 9.50 67.95 0.65 -29.99 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 C 0.01 0.67 5.49 84.86 0.47 1.14 16 10 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 11 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 12 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 13 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 14 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 15 C 0.13 3.06 3.45 46.37 0.16 3.22 16 16 H 0.09 2.73 7.01 -2.39 -0.02 2.71 16 17 C -0.14 -2.42 6.50 31.77 0.21 -2.21 16 18 C 0.05 0.90 5.77 86.65 0.50 1.40 16 19 N -0.47 -9.48 5.14 -691.00 -3.55 -13.03 16 20 C 0.24 4.54 6.15 133.10 0.82 5.36 16 21 N -0.47 -7.24 8.35 -192.42 -1.61 -8.85 16 22 C 0.08 0.64 11.21 84.58 0.95 1.59 16 23 C 0.06 0.51 11.21 84.57 0.95 1.46 16 24 N -0.47 -7.96 10.50 -195.80 -2.06 -10.01 16 25 C 0.23 4.45 7.83 84.99 0.67 5.11 16 26 F -0.11 -2.35 16.12 44.97 0.73 -1.62 16 27 C 0.05 0.98 5.95 86.77 0.52 1.50 16 28 H 0.07 1.08 8.09 -2.38 -0.02 1.06 16 29 H 0.08 1.38 6.44 -2.39 -0.02 1.37 16 30 H 0.09 1.11 6.31 -2.39 -0.02 1.10 16 31 H 0.11 3.85 7.40 -2.40 -0.02 3.83 16 32 H 0.11 3.84 8.11 -2.39 -0.02 3.82 16 33 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.32 6.30 -2.39 -0.02 1.31 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.10 7.09 -2.39 -0.02 1.08 16 38 H 0.22 -0.25 8.06 -2.92 -0.02 -0.28 16 39 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.10 1.89 5.49 -2.39 -0.01 1.88 16 41 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -81.55 356.21 1.35 -80.20 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.07 Total: 10.59 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 8.02 Total: 6.91 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -9.30 Total: -105.29 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.05 Total: -26.21 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.73 Total: -1.62 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -81.55 1.35 -80.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102669993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.898 kcal (2) G-P(sol) polarization free energy of solvation -81.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds