Wall clock time and date at job start Tue Mar 31 2020 23:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34771 * 120.00431 * 2 1 4 4 O 1.21284 * 120.00353 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99952 * 359.97438 * 3 2 1 6 6 S 1.80990 * 109.47384 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00278 * 180.02562 * 6 5 3 8 8 H 1.08003 * 119.99888 * 359.97438 * 7 6 5 9 9 C 1.38797 * 120.00452 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00292 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99660 * 0.02562 * 9 7 6 12 12 H 1.48506 * 109.47297 * 269.99524 * 11 9 7 13 13 H 1.48503 * 109.47261 * 149.99704 * 11 9 7 14 14 H 1.48500 * 109.47454 * 29.99697 * 11 9 7 15 15 C 1.46504 * 119.99898 * 179.97438 * 2 1 3 16 16 H 1.08997 * 110.28981 * 179.32841 * 15 2 1 17 17 C 1.54262 * 110.32706 * 301.45603 * 15 2 1 18 18 C 1.54370 * 105.06387 * 118.89431 * 17 15 2 19 19 N 1.48558 * 104.59386 * 23.85334 * 18 17 15 20 20 C 1.38581 * 110.99930 * 200.96080 * 19 18 17 21 21 C 1.39457 * 120.51421 * 59.59904 * 20 19 18 22 22 C 1.38471 * 118.31088 * 179.76028 * 21 20 19 23 23 F 1.35101 * 120.43344 * 180.26033 * 22 21 20 24 24 N 1.32784 * 119.13872 * 0.51148 * 22 21 20 25 25 C 1.31763 * 120.95975 * 359.74835 * 24 22 21 26 26 N 1.31752 * 121.86535 * 359.97438 * 25 24 22 27 27 C 1.48558 * 104.22349 * 320.51632 * 19 18 17 28 28 H 1.08997 * 109.47000 * 90.00273 * 1 2 3 29 29 H 1.08999 * 109.47159 * 210.00333 * 1 2 3 30 30 H 1.08996 * 109.46926 * 330.00108 * 1 2 3 31 31 H 1.09001 * 109.47050 * 59.99941 * 5 3 2 32 32 H 1.08999 * 109.47014 * 300.00996 * 5 3 2 33 33 H 0.96997 * 119.99773 * 180.02562 * 10 9 7 34 34 H 1.09003 * 110.32173 * 237.79581 * 17 15 2 35 35 H 1.09008 * 110.31760 * 359.97438 * 17 15 2 36 36 H 1.08998 * 110.41395 * 142.63522 * 18 17 15 37 37 H 1.09003 * 110.41413 * 265.07996 * 18 17 15 38 38 H 1.08000 * 120.84766 * 359.97438 * 21 20 19 39 39 H 1.08003 * 119.06816 * 179.97438 * 25 24 22 40 40 H 1.08999 * 110.41189 * 280.70468 * 27 19 18 41 41 H 1.09003 * 110.41266 * 158.25804 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4723 -0.0006 6 16 2.5616 3.8479 -0.0012 7 6 1.4417 5.2082 -0.0010 8 1 0.3763 5.0305 -0.0011 9 6 1.9284 6.5080 -0.0009 10 7 1.0916 7.5242 -0.0002 11 14 3.7709 6.8153 -0.0015 12 1 4.2598 6.8964 1.3984 13 1 4.0595 8.0929 -0.7014 14 1 4.4584 5.7009 -0.7021 15 6 2.1975 -1.2688 0.0006 16 1 3.2718 -1.0850 -0.0115 17 6 1.8116 -2.1097 1.2349 18 6 1.1979 -3.4051 0.6619 19 7 1.7751 -3.5213 -0.7020 20 6 0.9949 -4.3397 -1.5033 21 6 -0.3397 -4.0216 -1.7533 22 6 -1.0758 -4.8686 -2.5646 23 9 -2.3708 -4.5988 -2.8393 24 7 -0.4938 -5.9522 -3.0649 25 6 0.7684 -6.2254 -2.8038 26 7 1.5060 -5.4438 -2.0417 27 6 1.7844 -2.1269 -1.2144 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 0.7585 2.5302 0.8892 32 1 0.7591 2.5298 -0.8907 33 1 1.4319 8.4325 -0.0005 34 1 2.6969 -2.3401 1.8278 35 1 1.0775 -1.5782 1.8406 36 1 1.4844 -4.2630 1.2703 37 1 0.1124 -3.3207 0.6094 38 1 -0.7869 -3.1354 -1.3279 39 1 1.2110 -7.1153 -3.2266 40 1 0.7907 -1.8425 -1.5605 41 1 2.5125 -2.0224 -2.0188 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102670256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:16 Heat of formation + Delta-G solvation = -15.890267 kcal Electronic energy + Delta-G solvation = -26513.663360 eV Core-core repulsion = 22469.931176 eV Total energy + Delta-G solvation = -4043.732184 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.39464 -42.51488 -41.25062 -39.68496 -36.65549 -34.67738 -34.63933 -33.42052 -31.55226 -30.59842 -29.39899 -27.86779 -27.70887 -25.97825 -24.96414 -22.74462 -22.48072 -20.44427 -19.70120 -19.61877 -19.38088 -18.33169 -17.60050 -17.49462 -17.12686 -17.04207 -16.84070 -16.61894 -16.17041 -15.83874 -15.68108 -15.47843 -15.06725 -14.94003 -14.80464 -14.39662 -14.34145 -13.87212 -13.55173 -13.52567 -13.34601 -13.17842 -13.01759 -12.77385 -12.71549 -12.48287 -12.22300 -11.96786 -11.86629 -11.57950 -11.16736 -10.95330 -10.89135 -10.80186 -10.51359 -9.91646 -9.78015 -8.99641 -8.51245 -6.21842 -0.50727 -0.40939 0.97573 1.31521 1.44722 1.49469 1.52712 1.87292 2.09438 2.22890 2.25524 2.35049 2.68977 2.87214 2.97688 3.26365 3.43767 3.56735 3.68868 3.68993 3.84881 4.00767 4.05007 4.14474 4.18655 4.29209 4.36343 4.44277 4.47768 4.59585 4.64563 4.82888 4.86141 4.89131 4.96013 5.09900 5.20387 5.44132 5.59615 5.71169 5.84182 6.11947 6.17382 6.79507 6.94315 7.05815 8.60906 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022936 B = 0.002229 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.479468 B =12555.963476 C =13115.668472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.601 5.601 3 C 0.536 3.464 4 O -0.559 6.559 5 C -0.105 4.105 6 S -0.180 6.180 7 C -0.525 4.525 8 H 0.064 0.936 9 C 0.045 3.955 10 N -0.916 5.916 11 Si 0.913 3.087 12 H -0.262 1.262 13 H -0.261 1.261 14 H -0.237 1.237 15 C 0.139 3.861 16 H 0.091 0.909 17 C -0.126 4.126 18 C 0.046 3.954 19 N -0.481 5.481 20 C 0.376 3.624 21 C -0.274 4.274 22 C 0.358 3.642 23 F -0.102 7.102 24 N -0.574 5.574 25 C 0.351 3.649 26 N -0.527 5.527 27 C 0.038 3.962 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.276 0.724 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.181 0.819 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 -29.330 -0.898 29.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.335 5.335 3 C 0.323 3.677 4 O -0.437 6.437 5 C -0.256 4.256 6 S 0.047 5.953 7 C -0.673 4.673 8 H 0.082 0.918 9 C -0.160 4.160 10 N -0.554 5.554 11 Si 0.735 3.265 12 H -0.187 1.187 13 H -0.185 1.185 14 H -0.161 1.161 15 C 0.035 3.965 16 H 0.109 0.891 17 C -0.164 4.164 18 C -0.080 4.080 19 N -0.204 5.204 20 C 0.137 3.863 21 C -0.300 4.300 22 C 0.198 3.802 23 F -0.081 7.081 24 N -0.295 5.295 25 C 0.063 3.937 26 N -0.243 5.243 27 C -0.089 4.089 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.199 0.801 39 H 0.262 0.738 40 H 0.097 0.903 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.884 -30.168 -1.275 30.332 hybrid contribution -2.361 1.856 0.041 3.004 sum -5.245 -28.312 -1.235 28.820 Atomic orbital electron populations 1.22169 0.77072 1.05292 1.03595 1.47807 1.08227 1.04033 1.73401 1.20039 0.87246 0.85276 0.75104 1.90693 1.15426 1.87310 1.50298 1.23287 1.01708 0.93348 1.07249 1.84772 1.13904 0.99095 1.97569 1.22435 0.94398 0.92395 1.58078 0.91778 1.25548 1.02604 0.94866 0.92998 1.70012 1.36711 0.99517 1.49209 0.85886 0.80399 0.80019 0.80190 1.18712 1.18526 1.16097 1.21684 0.97933 0.82137 0.94776 0.89067 1.22700 1.02998 0.94071 0.96656 1.23386 0.98613 0.99616 0.86359 1.62263 1.47262 1.08072 1.02827 1.20116 0.86900 0.89951 0.89351 1.23293 0.96877 1.05078 1.04761 1.18427 0.80090 0.90458 0.91276 1.91695 1.32556 1.92244 1.91569 1.67935 1.15451 1.19394 1.26697 1.25591 0.82997 0.97229 0.87861 1.68235 1.39852 1.05278 1.10972 1.23534 1.02803 0.84704 0.97860 0.90963 0.87935 0.90027 0.86678 0.86995 0.91410 0.89405 0.88191 0.88058 0.90488 0.80149 0.73829 0.90308 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 8.87 127.77 1.13 1.88 16 2 N -0.60 -12.47 2.79 -817.60 -2.28 -14.75 16 3 C 0.54 17.16 7.69 87.66 0.67 17.83 16 4 O -0.56 -22.78 15.22 -3.04 -0.05 -22.83 16 5 C -0.11 -3.72 4.71 71.24 0.34 -3.38 16 6 S -0.18 -8.84 18.55 -56.49 -1.05 -9.89 16 7 C -0.53 -29.83 10.04 67.95 0.68 -29.14 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 9 C 0.05 2.61 5.50 84.86 0.47 3.08 16 10 N -0.92 -55.00 13.97 21.65 0.30 -54.70 16 11 Si 0.91 44.43 27.74 68.60 1.90 46.34 16 12 H -0.26 -12.47 7.11 99.48 0.71 -11.76 16 13 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 14 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 15 C 0.14 2.55 3.46 45.89 0.16 2.71 16 16 H 0.09 2.28 6.96 -2.39 -0.02 2.26 16 17 C -0.13 -1.52 6.17 31.49 0.19 -1.33 16 18 C 0.05 0.45 6.36 86.45 0.55 1.00 16 19 N -0.48 -7.16 5.46 -687.45 -3.76 -10.91 16 20 C 0.38 5.69 5.94 133.09 0.79 6.48 16 21 C -0.27 -3.33 8.12 22.62 0.18 -3.15 16 22 C 0.36 5.48 8.50 84.60 0.72 6.20 16 23 F -0.10 -1.62 17.30 44.97 0.78 -0.84 16 24 N -0.57 -9.23 10.45 -201.32 -2.10 -11.33 16 25 C 0.35 4.50 12.28 180.91 2.22 6.72 16 26 N -0.53 -8.74 10.47 -197.69 -2.07 -10.81 16 27 C 0.04 0.60 5.95 86.45 0.51 1.11 16 28 H 0.07 0.74 7.89 -2.39 -0.02 0.72 16 29 H 0.10 0.61 6.84 -2.39 -0.02 0.59 16 30 H 0.08 1.09 6.44 -2.39 -0.02 1.07 16 31 H 0.12 3.67 7.40 -2.39 -0.02 3.65 16 32 H 0.11 3.64 8.11 -2.40 -0.02 3.62 16 33 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 0.99 6.98 -2.38 -0.02 0.97 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.45 6.78 -2.39 -0.02 0.44 16 38 H 0.18 1.25 6.86 -2.91 -0.02 1.23 16 39 H 0.25 1.15 8.06 -2.91 -0.02 1.12 16 40 H 0.08 0.96 5.27 -2.39 -0.01 0.95 16 41 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -76.32 354.84 1.34 -74.98 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 1.04 Total: 4.74 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 8.62 Total: 10.01 kcal Atomic # 7 Polarization: -92.60 SS G_CDS: -9.91 Total: -102.51 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.05 Total: -22.83 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.78 Total: -0.84 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.34 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.05 Total: -9.89 kcal Total: -76.32 1.34 -74.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102670256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.092 kcal (2) G-P(sol) polarization free energy of solvation -76.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds