Wall clock time and date at job start Tue Mar 31 2020 23:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 102.99691 * 2 1 4 4 C 1.53002 * 109.46732 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47766 * 54.99727 * 4 3 2 6 6 C 1.52999 * 109.47080 * 294.99436 * 4 3 2 7 7 C 1.50703 * 109.46941 * 174.99868 * 4 3 2 8 8 O 1.21279 * 120.00054 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99951 * 179.97438 * 7 4 3 10 10 C 1.48142 * 127.83722 * 179.97438 * 9 7 4 11 11 C 1.54397 * 104.61412 * 219.60489 * 10 9 7 12 12 H 1.09002 * 110.34226 * 95.00254 * 11 10 9 13 13 C 1.53001 * 110.34022 * 217.26220 * 11 10 9 14 14 F 1.39897 * 109.47041 * 175.53990 * 13 11 10 15 15 F 1.39907 * 109.46916 * 295.53260 * 13 11 10 16 16 F 1.39899 * 109.47665 * 55.53160 * 13 11 10 17 17 C 1.54287 * 104.95976 * 336.12786 * 11 10 9 18 18 H 1.08991 * 110.43298 * 241.08483 * 17 11 10 19 19 N 1.46499 * 110.34031 * 118.87340 * 17 11 10 20 20 C 1.36931 * 120.00122 * 158.00987 * 19 17 11 21 21 H 1.08002 * 120.00098 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 180.02562 * 20 19 17 23 23 N 1.31624 * 119.99535 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00187 * 180.27849 * 22 20 19 25 25 H 1.48501 * 109.46922 * 269.71949 * 24 22 20 26 26 H 1.48496 * 109.47354 * 29.72145 * 24 22 20 27 27 H 1.48501 * 109.47428 * 149.72253 * 24 22 20 28 28 C 1.48148 * 127.83782 * 359.97237 * 9 7 4 29 29 H 1.09006 * 109.47097 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47445 * 300.00472 * 1 2 3 31 31 H 1.09004 * 109.46744 * 60.00487 * 1 2 3 32 32 H 1.08994 * 109.47263 * 60.00157 * 3 2 1 33 33 H 1.09003 * 109.46938 * 299.99290 * 3 2 1 34 34 H 1.08999 * 109.47074 * 179.97438 * 6 4 3 35 35 H 1.08999 * 109.47570 * 300.00628 * 6 4 3 36 36 H 1.09000 * 109.47177 * 60.00246 * 6 4 3 37 37 H 1.08999 * 110.41048 * 338.38341 * 10 9 7 38 38 H 1.08994 * 110.41171 * 100.70295 * 10 9 7 39 39 H 0.97001 * 119.99790 * 338.00504 * 19 17 11 40 40 H 0.97005 * 119.99717 * 180.02562 * 23 22 20 41 41 H 1.08999 * 110.40547 * 21.60929 * 28 9 7 42 42 H 1.09000 * 110.50546 * 259.23127 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1702 1.3951 -0.8408 6 6 4.3171 1.3919 1.3084 7 6 4.0819 3.4030 -0.1232 8 8 3.1954 4.2266 -0.2036 9 7 5.3709 3.7961 -0.1437 10 6 5.8985 5.1756 -0.2587 11 6 7.1231 5.0479 -1.1904 12 1 6.8400 5.2655 -2.2203 13 6 8.2391 5.9898 -0.7339 14 9 9.3739 5.7867 -1.5264 15 9 7.8119 7.3158 -0.8624 16 9 8.5519 5.7282 0.6044 17 6 7.5735 3.5783 -1.0569 18 1 8.5899 3.5258 -0.6671 19 7 7.4904 2.9006 -2.3530 20 6 8.2351 1.7754 -2.5863 21 1 8.8834 1.3873 -1.8145 22 6 8.1569 1.1334 -3.8145 23 7 7.3664 1.6061 -4.7549 24 14 9.1669 -0.4060 -4.1299 25 1 10.4846 -0.0254 -4.6992 26 1 9.3714 -1.1343 -2.8521 27 1 8.4476 -1.2821 -5.0893 28 6 6.5816 2.9468 -0.0561 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8031 2.2371 0.8899 33 1 1.8031 2.2371 -0.8901 34 1 5.4002 1.5144 1.3086 35 1 3.8893 1.9367 2.1499 36 1 4.0715 0.3338 1.3980 37 1 5.1505 5.8329 -0.7022 38 1 6.2003 5.5501 0.7194 39 1 6.9078 3.2489 -3.0460 40 1 7.3114 1.1573 -5.6131 41 1 6.3489 1.9223 -0.3465 42 1 6.9927 2.9709 0.9532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112071049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:15 Heat of formation + Delta-G solvation = -176.113481 kcal Electronic energy + Delta-G solvation = -28954.932981 eV Core-core repulsion = 24453.563811 eV Total energy + Delta-G solvation = -4501.369171 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.93985 -47.45197 -47.35323 -40.10301 -37.80057 -34.57979 -34.11201 -31.98492 -30.62158 -29.18255 -27.72975 -27.19879 -26.01656 -24.41335 -23.10390 -21.84016 -20.42237 -19.18191 -18.34894 -18.03677 -17.81040 -17.18285 -16.72258 -15.93761 -15.78322 -15.37512 -15.00312 -14.61505 -14.41320 -14.24257 -13.95080 -13.84416 -13.76162 -13.74165 -13.59943 -13.54112 -13.48522 -13.35889 -13.15749 -12.83164 -12.43390 -12.19117 -12.02061 -11.90001 -11.73482 -11.47257 -11.20539 -11.11296 -10.94711 -10.89397 -10.87507 -10.21046 -10.05146 -9.88990 -9.63810 -9.21661 -8.60836 -7.71778 -7.20297 -5.93762 -3.26589 1.54483 2.49692 2.71085 2.83624 3.16512 3.35747 3.41325 3.43190 3.94950 4.04284 4.17720 4.46922 4.58324 4.66543 4.82343 4.85165 4.96889 4.99260 5.01294 5.21515 5.29662 5.31862 5.42806 5.49750 5.51652 5.54811 5.62757 5.67663 5.81225 5.88429 5.95794 6.01756 6.07571 6.12964 6.26300 6.48891 7.54391 7.66107 8.21142 8.24646 9.34331 9.82728 10.17993 11.27605 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007940 B = 0.004736 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3525.554201 B = 5910.372166 C = 8682.377700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.255 6.255 3 C -0.062 4.062 4 C -0.091 4.091 5 H 0.115 0.885 6 C -0.149 4.149 7 C 0.551 3.449 8 O -0.552 6.552 9 N -0.608 5.608 10 C 0.117 3.883 11 C -0.165 4.165 12 H 0.129 0.871 13 C 0.464 3.536 14 F -0.173 7.173 15 F -0.187 7.187 16 F -0.184 7.184 17 C 0.178 3.822 18 H 0.077 0.923 19 N -0.709 5.709 20 C -0.255 4.255 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.925 5.925 24 Si 0.908 3.092 25 H -0.288 1.288 26 H -0.279 1.279 27 H -0.290 1.290 28 C 0.070 3.930 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.099 0.901 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.737 3.227 12.135 14.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.030 6.030 3 C -0.211 4.211 4 C -0.113 4.113 5 H 0.133 0.867 6 C -0.207 4.207 7 C 0.339 3.661 8 O -0.430 6.430 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.187 4.187 12 H 0.147 0.853 13 C 0.409 3.591 14 F -0.154 7.154 15 F -0.169 7.169 16 F -0.165 7.165 17 C 0.065 3.935 18 H 0.094 0.906 19 N -0.350 5.350 20 C -0.385 4.385 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.572 5.572 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.205 1.205 27 H -0.217 1.217 28 C -0.056 4.056 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.536 2.589 12.064 13.963 hybrid contribution -0.237 0.515 -0.555 0.793 sum -6.773 3.104 11.508 13.709 Atomic orbital electron populations 1.23376 0.94630 1.06300 1.04892 1.86882 1.06860 1.11173 1.98048 1.23191 0.98017 0.93747 1.06128 1.20950 0.94468 0.93423 1.02433 0.86711 1.21957 1.01822 1.02213 0.94699 1.20017 0.80426 0.90436 0.75201 1.90672 1.46186 1.54863 1.51313 1.48719 1.05297 1.08123 1.71925 1.22114 0.94089 0.85724 0.98722 1.23867 0.93181 0.97759 1.03879 0.85335 1.20294 0.83828 0.79948 0.74993 1.93236 1.53561 1.94719 1.73868 1.93172 1.89809 1.38219 1.95673 1.93152 1.93857 1.93825 1.35689 1.21054 0.97089 0.86063 0.89270 0.90555 1.42418 1.52198 1.30567 1.09808 1.19181 1.19155 1.01935 0.98279 0.90716 1.24768 0.99542 0.99393 0.96204 1.69661 1.40646 1.41588 1.05268 0.86186 0.79514 0.82604 0.77817 1.21516 1.20490 1.21650 1.23731 0.85006 0.97220 0.99659 0.88171 0.90628 0.90489 0.89620 0.89184 0.90988 0.92318 0.90455 0.88913 0.90281 0.77794 0.93175 0.88255 0.91368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.76 101.05 1.09 -0.01 16 2 S -0.26 -3.13 21.19 -107.50 -2.28 -5.41 16 3 C -0.06 -0.80 4.73 37.16 0.18 -0.63 16 4 C -0.09 -1.26 2.06 -91.77 -0.19 -1.45 16 5 H 0.11 1.78 7.95 -51.93 -0.41 1.36 16 6 C -0.15 -1.75 8.77 37.16 0.33 -1.43 16 7 C 0.55 8.79 7.27 -10.98 -0.08 8.71 16 8 O -0.55 -10.14 16.19 5.56 0.09 -10.05 16 9 N -0.61 -9.14 3.31 -169.29 -0.56 -9.70 16 10 C 0.12 1.62 6.38 -2.41 -0.02 1.60 16 11 C -0.17 -2.46 2.84 -89.21 -0.25 -2.71 16 12 H 0.13 2.02 7.64 -51.93 -0.40 1.62 16 13 C 0.46 6.62 2.53 37.16 0.09 6.72 16 14 F -0.17 -2.82 16.93 2.25 0.04 -2.78 16 15 F -0.19 -2.58 17.17 2.25 0.04 -2.54 16 16 F -0.18 -2.50 16.05 2.25 0.04 -2.46 16 17 C 0.18 3.04 2.99 -66.52 -0.20 2.84 16 18 H 0.08 1.32 7.37 -51.93 -0.38 0.93 16 19 N -0.71 -15.67 5.14 -52.06 -0.27 -15.93 16 20 C -0.26 -6.36 9.97 -15.06 -0.15 -6.51 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C 0.00 -0.04 5.50 -17.43 -0.10 -0.14 16 23 N -0.93 -26.22 13.06 55.49 0.72 -25.50 16 24 Si 0.91 21.09 29.55 -169.99 -5.02 16.06 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.07 1.04 4.97 -2.39 -0.01 1.02 16 29 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.25 7.96 -51.92 -0.41 0.84 16 34 H 0.07 0.83 5.34 -51.93 -0.28 0.55 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.88 7.13 -51.93 -0.37 0.51 16 37 H 0.09 1.30 7.88 -51.93 -0.41 0.89 16 38 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 39 H 0.39 9.36 7.50 -40.82 -0.31 9.05 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.10 1.61 6.48 -51.93 -0.34 1.28 16 42 H 0.07 0.86 8.01 -51.93 -0.42 0.44 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -28.81 365.99 -6.75 -35.56 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.76 Total: 9.20 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 0.69 Total: 8.02 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 9 Polarization: -7.89 SS G_CDS: 0.11 Total: -7.78 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.28 Total: -5.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.81 -6.75 -35.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112071049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.555 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds