Wall clock time and date at job start Tue Mar 31 2020 23:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 110.88672 * 2 1 4 4 C 1.55130 * 110.93999 * 124.07553 * 2 1 3 5 5 N 1.47423 * 104.72519 * 155.29310 * 4 2 1 6 6 C 1.34777 * 125.65100 * 155.82132 * 5 4 2 7 7 O 1.21274 * 120.00135 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99766 * 179.71255 * 6 5 4 9 9 S 1.81003 * 109.46851 * 179.97438 * 8 6 5 10 10 C 1.76196 * 99.99843 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00031 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99637 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00514 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99567 * 179.97438 * 12 10 9 15 15 H 1.48496 * 109.47216 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46911 * 120.00106 * 14 12 10 17 17 H 1.48506 * 109.47215 * 239.99864 * 14 12 10 18 18 C 1.47030 * 108.70203 * 335.54900 * 5 4 2 19 19 C 1.54323 * 107.26779 * 1.29350 * 18 5 4 20 20 H 1.09005 * 110.71823 * 263.82555 * 19 18 5 21 21 N 1.46498 * 110.72447 * 140.73377 * 19 18 5 22 22 C 1.38534 * 120.00080 * 86.44585 * 21 19 18 23 23 N 1.32450 * 119.19095 * 359.73272 * 22 21 19 24 24 C 1.32294 * 120.76654 * 179.75595 * 23 22 21 25 25 C 1.38785 * 119.16965 * 0.50847 * 24 23 22 26 26 F 1.35098 * 120.74849 * 179.76901 * 25 24 23 27 27 C 1.38782 * 118.50500 * 359.75081 * 25 24 23 28 28 N 1.32294 * 119.17295 * 359.97438 * 27 25 24 29 29 H 1.09002 * 109.47043 * 183.87995 * 1 2 3 30 30 H 1.09001 * 109.46966 * 303.88198 * 1 2 3 31 31 H 1.08998 * 109.47084 * 63.88243 * 1 2 3 32 32 H 1.08997 * 110.49580 * 36.44695 * 4 2 1 33 33 H 1.09002 * 110.34441 * 274.05478 * 4 2 1 34 34 H 1.09000 * 109.47161 * 299.99737 * 8 6 5 35 35 H 1.09001 * 109.46740 * 59.99879 * 8 6 5 36 36 H 0.96995 * 120.00407 * 179.97438 * 13 12 10 37 37 H 1.08994 * 109.88106 * 120.70296 * 18 5 4 38 38 H 1.08991 * 109.88401 * 241.71922 * 18 5 4 39 39 H 0.97002 * 119.99700 * 266.45762 * 21 19 18 40 40 H 1.08002 * 120.42145 * 180.23556 * 24 23 22 41 41 H 1.08004 * 120.41275 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8118 1.2001 5 7 3.4280 -1.2421 0.7726 6 6 4.4489 -1.5603 1.5929 7 8 4.3011 -1.5035 2.7953 8 6 5.7725 -1.9922 1.0161 9 16 6.9300 -2.3472 2.3616 10 6 8.3500 -2.8137 1.4285 11 1 8.3106 -2.8145 0.3493 12 6 9.5188 -3.1812 2.0807 13 7 9.5664 -3.1817 3.3961 14 14 11.0241 -3.6765 1.0914 15 1 10.7130 -3.5934 -0.3582 16 1 12.1487 -2.7602 1.4092 17 1 11.4073 -5.0690 1.4370 18 6 3.4679 -1.2731 -0.6968 19 6 2.0862 -0.8075 -1.2025 20 1 1.4472 -1.6631 -1.4211 21 7 2.2275 0.0468 -2.3842 22 6 2.3012 -0.5220 -3.6452 23 7 2.2477 -1.8402 -3.7635 24 6 2.3105 -2.4160 -4.9529 25 6 2.4446 -1.6215 -6.0829 26 9 2.5165 -2.1761 -7.3126 27 6 2.5027 -0.2444 -5.9211 28 7 2.4285 0.2655 -4.7027 29 1 -0.3633 -1.0253 0.0695 30 1 -0.3633 0.5729 0.8532 31 1 -0.3633 0.4524 -0.9227 32 1 1.4537 -1.6783 1.3986 33 1 2.1523 -0.1801 2.0858 34 1 5.6306 -2.8887 0.4125 35 1 6.1748 -1.1940 0.3922 36 1 10.3831 -3.4389 3.8518 37 1 4.2425 -0.5982 -1.0609 38 1 3.6686 -2.2876 -1.0409 39 1 2.2696 1.0106 -2.2837 40 1 2.2626 -3.4912 -5.0431 41 1 2.6072 0.4030 -6.7793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112297838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:56 Heat of formation + Delta-G solvation = -15.445785 kcal Electronic energy + Delta-G solvation = -26216.531745 eV Core-core repulsion = 22172.818834 eV Total energy + Delta-G solvation = -4043.712910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.23121 -41.39092 -40.04597 -37.93516 -35.29135 -34.25453 -33.05001 -32.43518 -30.73822 -29.49250 -28.35220 -26.19681 -25.43977 -25.39993 -24.10104 -22.46152 -21.00962 -19.43089 -18.74532 -18.43837 -17.79728 -17.69496 -16.66137 -16.55817 -16.32465 -15.47920 -15.23996 -15.01436 -14.92409 -14.80971 -14.53736 -14.09113 -13.95525 -13.78655 -13.47307 -13.38577 -13.06127 -12.71712 -12.48863 -12.33659 -12.19941 -11.92641 -11.78830 -11.45346 -11.41125 -11.08052 -11.06247 -11.00965 -10.76060 -10.62050 -9.81380 -9.57947 -9.46248 -9.07947 -8.58712 -8.45142 -8.24378 -6.51160 -6.22408 -3.93052 0.53834 0.54306 2.24882 2.90014 3.02869 3.21193 3.25695 3.28929 3.31016 3.56056 3.58996 3.63139 3.96236 4.14431 4.19696 4.25992 4.38328 4.43829 4.56489 4.84571 4.98824 5.02783 5.04699 5.12886 5.15462 5.35628 5.43517 5.50981 5.53401 5.60345 5.68542 5.73703 5.80462 5.90825 5.91486 6.13250 6.22799 6.33447 6.52789 6.91235 7.58491 7.60311 7.75763 8.34954 8.51195 9.23082 10.85115 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.002845 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.437022 B = 9839.402054 C =12328.285121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.092 0.908 4 C 0.114 3.886 5 N -0.626 5.626 6 C 0.550 3.450 7 O -0.513 6.513 8 C -0.147 4.147 9 S -0.060 6.060 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.279 1.279 18 C 0.092 3.908 19 C 0.155 3.845 20 H 0.111 0.889 21 N -0.681 5.681 22 C 0.560 3.440 23 N -0.540 5.540 24 C 0.177 3.823 25 C -0.075 4.075 26 F -0.127 7.127 27 C 0.175 3.825 28 N -0.546 5.546 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.418 0.582 40 H 0.180 0.820 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.669 6.428 -18.296 28.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.131 4.131 3 H 0.110 0.890 4 C -0.009 4.009 5 N -0.364 5.364 6 C 0.339 3.661 7 O -0.387 6.387 8 C -0.297 4.297 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.033 4.033 19 C 0.049 3.951 20 H 0.129 0.871 21 N -0.318 5.318 22 C 0.203 3.797 23 N -0.262 5.262 24 C 0.007 3.993 25 C -0.103 4.103 26 F -0.106 7.106 27 C 0.005 3.995 28 N -0.268 5.268 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.257 0.743 40 H 0.197 0.803 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -20.766 6.750 -15.202 26.606 hybrid contribution 1.368 -0.502 -3.222 3.536 sum -19.397 6.248 -18.425 27.473 Atomic orbital electron populations 1.21704 0.92971 1.02725 1.02401 1.22719 0.96884 0.99855 0.93691 0.88968 1.22247 0.83404 0.98215 0.97028 1.48418 1.12147 1.69594 1.06208 1.20022 0.84019 0.76017 0.86030 1.90712 1.82283 1.51498 1.14209 1.23512 0.96264 1.03859 1.06104 1.85377 1.05017 1.87353 1.05607 1.22895 0.97967 1.52586 0.94815 0.90920 1.24991 0.98483 0.94937 0.95148 1.70023 1.28059 1.45105 1.07078 0.86119 0.81347 0.78307 0.79744 1.19631 1.20540 1.20510 1.22412 0.97667 1.02504 0.80759 1.22069 0.95994 0.93933 0.83111 0.87130 1.44098 1.77681 1.09438 1.00556 1.19372 0.88390 0.85191 0.86726 1.67997 1.21214 1.10661 1.26327 1.23172 0.89366 1.01333 0.85409 1.19138 1.14609 0.94076 0.82431 1.91522 1.94555 1.85411 1.39158 1.23103 0.89852 0.91562 0.94958 1.67953 1.21114 1.39554 0.98135 0.91914 0.91680 0.92091 0.91051 0.89767 0.89274 0.89446 0.92219 0.91134 0.90431 0.74346 0.80310 0.80431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.31 37.15 0.35 -0.46 16 2 C -0.11 -0.84 3.27 -88.36 -0.29 -1.12 16 3 H 0.09 0.65 8.01 -51.93 -0.42 0.23 16 4 C 0.11 1.25 6.38 -2.41 -0.02 1.23 16 5 N -0.63 -8.86 3.32 -170.38 -0.57 -9.43 16 6 C 0.55 10.66 7.87 -10.98 -0.09 10.57 16 7 O -0.51 -11.85 16.12 5.56 0.09 -11.76 16 8 C -0.15 -3.08 5.35 36.01 0.19 -2.88 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 12 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 14 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.09 1.04 6.24 -3.06 -0.02 1.02 16 19 C 0.16 1.30 2.69 -66.10 -0.18 1.12 16 20 H 0.11 0.95 7.53 -51.93 -0.39 0.56 16 21 N -0.68 -5.47 5.29 -53.99 -0.29 -5.76 16 22 C 0.56 5.32 8.43 -322.72 -2.72 2.60 16 23 N -0.54 -5.14 9.27 -13.87 -0.13 -5.27 16 24 C 0.18 1.38 11.29 -17.15 -0.19 1.18 16 25 C -0.07 -0.58 7.38 -39.18 -0.29 -0.87 16 26 F -0.13 -1.02 17.30 2.25 0.04 -0.98 16 27 C 0.17 1.30 11.29 -17.15 -0.19 1.11 16 28 N -0.55 -5.04 10.46 -13.87 -0.14 -5.18 16 29 H 0.06 0.36 8.07 -51.93 -0.42 -0.06 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.73 7.99 -51.93 -0.41 0.32 16 33 H 0.08 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 35 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.84 8.03 -51.93 -0.42 0.42 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.42 2.83 8.65 -40.82 -0.35 2.48 16 40 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.18 0.79 8.06 -52.48 -0.42 0.36 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -35.49 370.16 -10.50 -45.98 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -5.33 Total: -0.76 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.25 Total: 0.44 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.39 Total: -51.17 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -1.02 SS G_CDS: 0.04 Total: -0.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.49 -10.50 -45.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112297838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.538 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds