Wall clock time and date at job start Tue Mar 31 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.00262 * 2 1 4 4 C 1.54383 * 109.84061 * 238.91055 * 2 1 3 5 5 H 1.08999 * 110.70275 * 144.38794 * 4 2 1 6 6 N 1.46497 * 110.75462 * 21.09891 * 4 2 1 7 7 C 1.39159 * 119.99632 * 160.02792 * 6 4 2 8 8 C 1.39204 * 120.06020 * 359.72935 * 7 6 4 9 9 N 1.32014 * 119.92954 * 179.73229 * 8 7 6 10 10 C 1.32398 * 120.05464 * 0.53357 * 9 8 7 11 11 F 1.35099 * 119.93998 * 179.69085 * 10 9 8 12 12 C 1.38470 * 120.12293 * 359.72060 * 10 9 8 13 13 N 1.32211 * 120.06905 * 0.02562 * 12 10 9 14 14 C 1.55158 * 102.91824 * 262.73010 * 4 2 1 15 15 C 1.54909 * 101.61642 * 324.54893 * 14 4 2 16 16 N 1.47016 * 109.88270 * 121.10658 * 2 1 3 17 17 C 1.34774 * 125.64624 * 300.50267 * 16 2 1 18 18 O 1.21282 * 120.00096 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99909 * 179.97438 * 17 16 2 20 20 S 1.81002 * 109.47234 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00249 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99642 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00002 * 180.02562 * 21 20 19 24 24 N 1.31623 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 59.99740 * 25 23 21 27 27 H 1.48498 * 109.47123 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47185 * 299.99795 * 25 23 21 29 29 H 1.09006 * 109.46696 * 300.35073 * 1 2 3 30 30 H 1.09000 * 109.47265 * 60.35000 * 1 2 3 31 31 H 1.08997 * 109.47641 * 180.35410 * 1 2 3 32 32 H 0.97001 * 120.00114 * 340.02774 * 6 4 2 33 33 H 1.08008 * 120.03769 * 359.97335 * 8 7 6 34 34 H 1.07999 * 119.96776 * 179.97438 * 12 10 9 35 35 H 1.09002 * 111.00366 * 206.45412 * 14 4 2 36 36 H 1.09002 * 111.00429 * 82.64474 * 14 4 2 37 37 H 1.09000 * 110.36449 * 155.82966 * 15 14 4 38 38 H 1.09002 * 110.36579 * 278.03887 * 15 14 4 39 39 H 1.09006 * 109.46865 * 299.99965 * 19 17 16 40 40 H 1.08994 * 109.47167 * 60.00324 * 19 17 16 41 41 H 0.97000 * 119.99990 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0540 -0.7499 -1.2436 5 1 2.9645 -0.2833 -1.6196 6 7 1.0280 -0.8037 -2.2879 7 6 1.3919 -1.0470 -3.6088 8 6 2.7310 -1.2338 -3.9401 9 7 3.0727 -1.4697 -5.1932 10 6 2.1443 -1.5182 -6.1359 11 9 2.4974 -1.7536 -7.4185 12 6 0.8122 -1.3275 -5.8097 13 7 0.4639 -1.0959 -4.5555 14 6 2.3517 -2.1695 -0.6927 15 6 2.8568 -1.8499 0.7364 16 7 2.0300 -0.7143 1.1837 17 6 1.7743 -0.3856 2.4655 18 8 1.0772 0.5742 2.7180 19 6 2.3547 -1.2107 3.5851 20 16 1.8333 -0.5215 5.1755 21 6 2.6300 -1.6468 6.2726 22 1 3.2227 -2.4583 5.8770 23 6 2.4959 -1.4901 7.6452 24 7 1.7739 -0.5008 8.1273 25 14 3.3411 -2.6827 8.8083 26 1 4.8083 -2.6373 8.5837 27 1 3.0437 -2.2999 10.2119 28 1 2.8438 -4.0587 8.5540 29 1 -0.3633 0.5193 0.8869 30 1 -0.3634 0.5084 -0.8931 31 1 -0.3634 -1.0276 0.0064 32 1 0.0950 -0.6698 -2.0586 33 1 3.4891 -1.1897 -3.1722 34 1 0.0570 -1.3671 -6.5807 35 1 3.1268 -2.6618 -1.2801 36 1 1.4454 -2.7742 -0.6608 37 1 2.7087 -2.7082 1.3918 38 1 3.9096 -1.5688 0.7127 39 1 2.0000 -2.2380 3.5009 40 1 3.4427 -1.1955 3.5214 41 1 1.6799 -0.3915 9.0865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122940082.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:51 Heat of formation + Delta-G solvation = -29.102295 kcal Electronic energy + Delta-G solvation = -26137.338179 eV Core-core repulsion = 22093.033078 eV Total energy + Delta-G solvation = -4044.305101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.93463 -42.17572 -41.29048 -39.11113 -36.47726 -35.20021 -34.58311 -33.00103 -32.10315 -30.70126 -29.34115 -27.64825 -27.09128 -25.91890 -24.53951 -24.00847 -21.73656 -20.43877 -19.67008 -19.54627 -19.04916 -18.43180 -18.04728 -17.27109 -17.15197 -16.88099 -16.79022 -16.30145 -15.99148 -15.82533 -15.38047 -15.30317 -14.92738 -14.62620 -14.60842 -14.43844 -14.12322 -13.82629 -13.65580 -13.23618 -13.16441 -13.10643 -12.88885 -12.83678 -12.75272 -12.62135 -12.46165 -12.11344 -11.86969 -11.73924 -11.17025 -11.12496 -10.87841 -10.32239 -10.27265 -9.73996 -8.90193 -8.66815 -8.34309 -6.12468 -0.25521 0.01472 1.21697 1.42789 1.44128 1.53236 1.58128 1.72407 2.15108 2.27999 2.49700 2.54465 2.99917 3.13133 3.21118 3.32852 3.41277 3.51087 3.70458 3.84194 3.90980 4.08905 4.12389 4.23859 4.27560 4.28350 4.45211 4.45806 4.50081 4.57120 4.75613 4.90463 4.96024 5.10132 5.19455 5.25077 5.41670 5.42006 5.57201 6.19694 6.21476 6.23598 6.37016 6.71940 7.07025 7.13682 8.74487 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.001916 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.952178 B =14614.034114 C =15187.403750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 H 0.081 0.919 4 C 0.152 3.848 5 H 0.131 0.869 6 N -0.693 5.693 7 C 0.353 3.647 8 C 0.032 3.968 9 N -0.454 5.454 10 C 0.162 3.838 11 F -0.117 7.117 12 C 0.107 3.893 13 N -0.498 5.498 14 C -0.138 4.138 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.550 3.450 18 O -0.560 6.560 19 C -0.121 4.121 20 S -0.151 6.151 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.261 1.261 27 H -0.280 1.280 28 H -0.262 1.262 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.414 0.586 33 H 0.202 0.798 34 H 0.208 0.792 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -5.287 -28.298 28.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.027 3.973 3 H 0.099 0.901 4 C 0.046 3.954 5 H 0.148 0.852 6 N -0.328 5.328 7 C 0.113 3.887 8 C -0.138 4.138 9 N -0.172 5.172 10 C 0.006 3.994 11 F -0.097 7.097 12 C -0.055 4.055 13 N -0.220 5.220 14 C -0.177 4.177 15 C -0.033 4.033 16 N -0.347 5.347 17 C 0.338 3.662 18 O -0.438 6.438 19 C -0.272 4.272 20 S 0.076 5.924 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.186 1.186 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.256 0.744 33 H 0.218 0.782 34 H 0.224 0.776 35 H 0.138 0.862 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.314 -3.762 -27.651 27.937 hybrid contribution 0.634 -1.355 0.622 1.620 sum 1.948 -5.118 -27.029 27.578 Atomic orbital electron populations 1.22088 0.95035 1.02728 1.02828 1.21657 0.95045 0.96476 0.84166 0.90123 1.22104 0.91484 0.96630 0.85181 0.85179 1.44776 1.11018 1.75512 1.01477 1.19478 0.90764 0.91467 0.87015 1.23349 0.94836 1.03028 0.92596 1.67563 1.38031 1.09922 1.01689 1.18984 0.91448 1.08122 0.80843 1.91601 1.93123 1.92279 1.32660 1.23648 0.94148 0.93763 0.93958 1.68063 1.35836 1.17734 1.00398 1.23344 1.03753 0.96234 0.94385 1.22677 0.95940 0.88590 0.96049 1.48392 1.51409 1.31514 1.03424 1.19694 0.79786 0.84078 0.82631 1.90692 1.39478 1.30052 1.83531 1.23318 1.04795 1.02878 0.96205 1.85588 1.68487 1.42387 0.95928 1.23160 1.36528 1.16009 0.93650 0.89845 1.26118 0.95811 0.97860 0.99361 1.70173 1.38992 1.31418 1.14160 0.85022 0.78798 0.78029 0.76275 1.18582 1.20546 1.18646 0.93482 0.89344 0.91634 0.74413 0.78157 0.77553 0.86151 0.90139 0.89643 0.88397 0.87621 0.87366 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.23 7.94 71.98 0.57 -2.66 16 2 C 0.13 2.26 3.48 45.36 0.16 2.42 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C 0.15 1.35 2.74 46.20 0.13 1.48 16 5 H 0.13 0.58 6.65 -2.39 -0.02 0.57 16 6 N -0.69 -7.05 5.15 -318.44 -1.64 -8.69 16 7 C 0.35 4.44 7.67 132.95 1.02 5.46 16 8 C 0.03 0.37 10.40 84.90 0.88 1.26 16 9 N -0.45 -7.75 10.50 -195.81 -2.06 -9.80 16 10 C 0.16 2.63 8.43 84.66 0.71 3.34 16 11 F -0.12 -2.03 17.29 44.97 0.78 -1.25 16 12 C 0.11 1.34 11.20 84.69 0.95 2.29 16 13 N -0.50 -7.31 10.53 -192.40 -2.03 -9.33 16 14 C -0.14 -1.07 6.77 31.99 0.22 -0.86 16 15 C 0.09 1.17 6.69 86.86 0.58 1.75 16 16 N -0.61 -13.75 3.08 -787.96 -2.43 -16.18 16 17 C 0.55 19.18 7.65 87.66 0.67 19.85 16 18 O -0.56 -24.71 14.76 -3.03 -0.04 -24.75 16 19 C -0.12 -4.58 5.16 71.24 0.37 -4.21 16 20 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 21 C -0.55 -30.46 9.50 67.95 0.65 -29.82 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.26 16 23 C 0.01 0.75 5.49 84.86 0.47 1.21 16 24 N -0.91 -55.30 13.22 21.65 0.29 -55.02 16 25 Si 1.00 42.73 29.55 68.60 2.03 44.75 16 26 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 29 H 0.05 1.31 6.74 -2.38 -0.02 1.30 16 30 H 0.09 1.25 6.72 -2.39 -0.02 1.23 16 31 H 0.06 1.18 8.06 -2.39 -0.02 1.17 16 32 H 0.41 4.59 5.86 -92.71 -0.54 4.04 16 33 H 0.20 1.09 6.29 -2.91 -0.02 1.07 16 34 H 0.21 1.22 8.06 -2.91 -0.02 1.19 16 35 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 1.17 7.48 -2.39 -0.02 1.15 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.11 3.62 7.85 -2.39 -0.02 3.60 16 40 H 0.11 3.67 8.14 -2.40 -0.02 3.66 16 41 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -79.31 359.63 1.64 -77.66 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.54 Total: 10.45 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 7.37 Total: 1.53 kcal Atomic # 7 Polarization: -91.16 SS G_CDS: -7.86 Total: -99.02 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.04 Total: -24.75 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -79.31 1.64 -77.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940082.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.560 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds