Wall clock time and date at job start Tue Mar 31 2020 23:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 110.00009 * 2 1 4 4 C 1.54320 * 109.76955 * 121.15498 * 2 1 3 5 5 H 1.08995 * 110.92722 * 23.47200 * 4 2 1 6 6 N 1.46503 * 110.74040 * 260.21277 * 4 2 1 7 7 C 1.38535 * 119.99910 * 160.11435 * 6 4 2 8 8 N 1.32459 * 119.18946 * 359.72494 * 7 6 4 9 9 C 1.32291 * 120.76740 * 179.76705 * 8 7 6 10 10 C 1.38783 * 119.16692 * 0.50214 * 9 8 7 11 11 F 1.35095 * 120.74481 * 179.77628 * 10 9 8 12 12 C 1.38781 * 118.50872 * 359.74996 * 10 9 8 13 13 N 1.32291 * 119.17004 * 0.02562 * 12 10 9 14 14 C 1.55162 * 102.85816 * 141.88711 * 4 2 1 15 15 C 1.54910 * 101.58165 * 324.29869 * 14 4 2 16 16 N 1.47026 * 109.88140 * 238.89963 * 2 1 3 17 17 C 1.34778 * 125.64272 * 61.68463 * 16 2 1 18 18 O 1.21278 * 120.00140 * 359.70787 * 17 16 2 19 19 C 1.50703 * 119.99723 * 179.71485 * 17 16 2 20 20 S 1.80993 * 109.47026 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99993 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00153 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00523 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99397 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00627 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47339 * 180.02562 * 25 23 21 27 27 H 1.48493 * 109.47239 * 300.00544 * 25 23 21 28 28 H 1.48504 * 109.46636 * 60.00103 * 25 23 21 29 29 H 1.08998 * 109.47535 * 179.64443 * 1 2 3 30 30 H 1.09003 * 109.47418 * 299.64259 * 1 2 3 31 31 H 1.08994 * 109.47133 * 59.64235 * 1 2 3 32 32 H 0.97000 * 119.99834 * 340.10322 * 6 4 2 33 33 H 1.08000 * 120.42091 * 180.23793 * 9 8 7 34 34 H 1.08001 * 120.41492 * 179.97438 * 12 10 9 35 35 H 1.09005 * 110.99870 * 206.22743 * 14 4 2 36 36 H 1.08999 * 111.03852 * 82.39008 * 14 4 2 37 37 H 1.09001 * 110.36692 * 278.16856 * 15 14 4 38 38 H 1.08998 * 110.45570 * 155.90179 * 15 14 4 39 39 H 1.09001 * 109.47144 * 59.99673 * 19 17 16 40 40 H 1.09006 * 109.47011 * 299.99863 * 19 17 16 41 41 H 0.97005 * 119.99723 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7513 1.2428 5 1 1.3049 -1.4513 1.6168 6 7 2.4466 0.1923 2.2917 7 6 2.5477 -0.2351 3.6056 8 7 2.2786 -1.4991 3.8963 9 6 2.3695 -1.9417 5.1396 10 6 2.7421 -1.0611 6.1455 11 9 2.8406 -1.4779 7.4268 12 6 3.0116 0.2571 5.8055 13 7 2.9054 0.6316 4.5412 14 6 3.2888 -1.5102 0.6933 15 6 2.8190 -1.8764 -0.7367 16 7 2.0300 -0.7142 -1.1839 17 6 1.8085 -0.3613 -2.4657 18 8 1.1412 0.6194 -2.7180 19 6 2.3900 -1.1855 -3.5853 20 16 1.9183 -0.4613 -5.1755 21 6 2.7093 -1.5905 -6.2727 22 1 3.2729 -2.4226 -5.8773 23 6 2.6072 -1.4114 -7.6453 24 7 1.9198 -0.3975 -8.1273 25 14 3.4463 -2.6081 -8.8085 26 1 3.1871 -2.1983 -10.2120 27 1 4.9092 -2.6025 -8.5539 28 1 2.9100 -3.9747 -8.5842 29 1 -0.3634 -1.0276 -0.0064 30 1 -0.3634 0.5083 0.8932 31 1 -0.3633 0.5193 -0.8867 32 1 2.6373 1.1162 2.0662 33 1 2.1525 -2.9744 5.3697 34 1 3.3037 0.9686 6.5638 35 1 3.4895 -2.4066 1.2802 36 1 4.1642 -0.8614 0.6629 37 1 2.1971 -2.7712 -0.7142 38 1 3.6765 -2.0277 -1.3923 39 1 2.0078 -2.2044 -3.5228 40 1 3.4766 -1.1992 -3.4999 41 1 1.8487 -0.2721 -9.0866 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940626.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:11 Heat of formation + Delta-G solvation = -13.162733 kcal Electronic energy + Delta-G solvation = -26046.567732 eV Core-core repulsion = 22002.953822 eV Total energy + Delta-G solvation = -4043.613910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.28805 -41.43192 -40.17115 -37.79594 -35.36200 -34.30322 -32.44589 -32.07278 -31.35174 -29.98222 -28.43925 -25.89463 -25.50493 -25.28863 -23.54313 -22.89379 -21.34927 -19.43632 -18.66502 -18.42850 -17.84979 -17.64806 -16.73891 -16.45585 -16.22047 -15.66740 -15.18045 -14.92468 -14.88905 -14.81448 -14.58348 -14.03712 -13.97639 -13.87705 -13.53888 -13.10893 -12.91756 -12.62625 -12.57133 -12.35483 -12.15283 -11.83394 -11.77138 -11.55738 -11.46125 -11.06076 -11.05543 -11.00612 -10.78410 -10.54193 -9.84555 -9.62319 -9.41822 -9.07524 -8.62101 -8.47057 -8.26306 -6.52452 -6.23195 -3.94187 0.49325 0.49432 2.20075 2.89158 3.01033 3.22297 3.24140 3.24740 3.27954 3.50922 3.55531 3.59452 4.07363 4.10633 4.19006 4.29461 4.33579 4.41906 4.74406 4.92756 4.93670 5.02329 5.09656 5.11902 5.19187 5.37924 5.47558 5.50314 5.59929 5.67135 5.70486 5.80944 5.88780 5.90759 6.10405 6.17201 6.21233 6.40134 6.51708 6.89134 7.57138 7.59350 7.72442 8.33273 8.50213 9.21946 10.84130 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032826 B = 0.001913 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.781956 B =14633.428563 C =15134.649613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.079 0.921 4 C 0.153 3.847 5 H 0.111 0.889 6 N -0.681 5.681 7 C 0.563 3.437 8 N -0.541 5.541 9 C 0.176 3.824 10 C -0.078 4.078 11 F -0.128 7.128 12 C 0.176 3.824 13 N -0.547 5.547 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.621 5.621 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.283 1.283 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.418 0.582 33 H 0.179 0.821 34 H 0.178 0.822 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -3.353 29.238 29.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.097 0.903 4 C 0.047 3.953 5 H 0.129 0.871 6 N -0.317 5.317 7 C 0.206 3.794 8 N -0.263 5.263 9 C 0.006 3.994 10 C -0.106 4.106 11 F -0.107 7.107 12 C 0.006 3.994 13 N -0.268 5.268 14 C -0.183 4.183 15 C -0.022 4.022 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.385 6.385 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.257 0.743 33 H 0.196 0.804 34 H 0.195 0.805 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.186 -1.576 27.480 27.551 hybrid contribution 1.576 -1.947 0.645 2.586 sum 2.762 -3.522 28.125 28.479 Atomic orbital electron populations 1.22143 0.93903 1.02706 1.03274 1.21528 0.95233 0.96300 0.84054 0.90341 1.22092 0.97081 0.90501 0.85603 0.87111 1.44157 1.72491 1.13554 1.01497 1.19323 0.88029 0.85123 0.86901 1.68004 1.22296 1.15207 1.20789 1.23152 0.89867 1.00301 0.86072 1.19129 1.13714 0.96340 0.81404 1.91517 1.94598 1.90416 1.34196 1.23106 0.90499 0.92961 0.92818 1.67960 1.21065 1.37126 1.00675 1.23245 0.98060 1.01594 0.95447 1.22293 0.95850 0.89234 0.94799 1.48512 1.53970 1.28947 1.04544 1.20034 0.79798 0.84962 0.81206 1.90701 1.38369 1.26976 1.82457 1.23516 1.03639 1.02708 0.99891 1.85396 1.69263 1.38089 0.90530 1.22814 1.38095 1.14415 0.93094 0.90970 1.24993 0.95243 0.95982 0.97348 1.70010 1.38335 1.28161 1.13745 0.86221 0.79653 0.80520 0.79097 1.20804 1.19941 1.19919 0.92180 0.91988 0.90299 0.74347 0.80403 0.80457 0.89192 0.90230 0.90906 0.89848 0.89208 0.89283 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.10 37.16 0.34 -1.53 16 2 C 0.13 1.50 3.21 -66.95 -0.21 1.28 16 3 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 4 C 0.15 1.33 2.75 -66.09 -0.18 1.14 16 5 H 0.11 0.98 7.34 -51.93 -0.38 0.60 16 6 N -0.68 -5.68 5.36 -53.99 -0.29 -5.97 16 7 C 0.56 5.12 8.43 -322.71 -2.72 2.40 16 8 N -0.54 -4.63 9.27 -13.87 -0.13 -4.76 16 9 C 0.18 1.17 11.29 -17.15 -0.19 0.98 16 10 C -0.08 -0.53 7.38 -39.18 -0.29 -0.82 16 11 F -0.13 -0.90 17.29 2.25 0.04 -0.86 16 12 C 0.18 1.20 11.29 -17.15 -0.19 1.01 16 13 N -0.55 -4.85 10.46 -13.87 -0.14 -5.00 16 14 C -0.14 -1.19 6.76 -24.58 -0.17 -1.35 16 15 C 0.10 1.02 6.69 -2.53 -0.02 1.00 16 16 N -0.62 -8.40 3.07 -163.03 -0.50 -8.90 16 17 C 0.55 10.20 7.66 -10.98 -0.08 10.11 16 18 O -0.51 -11.34 14.89 5.56 0.08 -11.25 16 19 C -0.15 -2.94 5.16 36.01 0.19 -2.75 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 25 Si 0.92 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.16 6.88 -51.93 -0.36 0.80 16 32 H 0.42 3.21 8.43 -40.82 -0.34 2.86 16 33 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 34 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.82 7.47 -51.93 -0.39 0.44 16 39 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 40 H 0.09 1.65 7.85 -51.91 -0.41 1.24 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 366.47 15.07 5.52 5.52 Total: -1.00 -34.48 366.47 -10.46 -44.94 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.20 Total: 0.47 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.34 Total: -1.36 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.33 Total: -49.87 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.48 -10.46 -44.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940626.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.778 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds