Wall clock time and date at job start Tue Mar 31 2020 23:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.99475 * 2 1 4 4 C 1.54324 * 109.88399 * 238.90571 * 2 1 3 5 5 H 1.09002 * 110.87002 * 144.34087 * 4 2 1 6 6 N 1.46496 * 110.72014 * 21.13620 * 4 2 1 7 7 C 1.38539 * 119.99881 * 160.02420 * 6 4 2 8 8 N 1.32452 * 119.18623 * 179.97438 * 7 6 4 9 9 C 1.32304 * 120.76064 * 179.97438 * 8 7 6 10 10 C 1.38777 * 119.17079 * 0.02562 * 9 8 7 11 11 F 1.35096 * 120.74560 * 179.97438 * 10 9 8 12 12 C 1.38784 * 118.51129 * 0.02562 * 10 9 8 13 13 N 1.32304 * 119.16638 * 359.97438 * 12 10 9 14 14 C 1.55155 * 102.94030 * 262.77205 * 4 2 1 15 15 C 1.54916 * 101.58475 * 324.50025 * 14 4 2 16 16 N 1.47023 * 109.88257 * 121.09423 * 2 1 3 17 17 C 1.34782 * 125.64717 * 300.51146 * 16 2 1 18 18 O 1.21278 * 119.99891 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99631 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.46860 * 180.02562 * 19 17 16 21 21 C 1.76204 * 100.00051 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99504 * 0.02562 * 21 20 19 23 23 C 1.38800 * 120.00078 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99944 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99846 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.46954 * 90.00054 * 25 23 21 27 27 H 1.48502 * 109.46876 * 209.99925 * 25 23 21 28 28 H 1.48491 * 109.47066 * 329.99817 * 25 23 21 29 29 H 1.09004 * 109.47053 * 181.09571 * 1 2 3 30 30 H 1.08998 * 109.47775 * 301.09386 * 1 2 3 31 31 H 1.08999 * 109.47333 * 61.09757 * 1 2 3 32 32 H 0.96997 * 120.00264 * 340.02644 * 6 4 2 33 33 H 1.07999 * 120.41396 * 179.97438 * 9 8 7 34 34 H 1.07999 * 120.41649 * 179.97438 * 12 10 9 35 35 H 1.08997 * 111.00486 * 82.57149 * 14 4 2 36 36 H 1.09000 * 111.00805 * 206.38616 * 14 4 2 37 37 H 1.08999 * 110.36523 * 155.84937 * 15 14 4 38 38 H 1.09000 * 110.36081 * 278.17258 * 15 14 4 39 39 H 1.09003 * 109.47354 * 300.00143 * 19 17 16 40 40 H 1.08996 * 109.47283 * 60.00468 * 19 17 16 41 41 H 0.96997 * 119.99765 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 2.9651 -0.2843 -1.6210 6 7 1.0293 -0.8026 -2.2875 7 6 1.3920 -1.0444 -3.6025 8 7 0.4515 -1.0896 -4.5341 9 6 0.7630 -1.3178 -5.7995 10 6 2.0932 -1.5114 -6.1444 11 9 2.4469 -1.7472 -7.4268 12 6 3.0519 -1.4583 -5.1423 13 7 2.6706 -1.2258 -3.8969 14 6 2.3519 -2.1694 -0.6924 15 6 2.8568 -1.8497 0.7369 16 7 2.0300 -0.7140 1.1839 17 6 1.7742 -0.3852 2.4658 18 8 1.0769 0.5746 2.7180 19 6 2.3546 -1.2101 3.5854 20 16 1.8329 -0.5207 5.1756 21 6 2.6298 -1.6457 6.2730 22 1 3.2225 -2.4572 5.8775 23 6 2.4964 -1.4883 7.6456 24 7 1.7743 -0.4989 8.1275 25 14 3.3418 -2.6806 8.8089 26 1 4.7003 -2.1764 9.1333 27 1 2.5472 -2.8010 10.0577 28 1 3.4497 -4.0121 8.1605 29 1 -0.3633 -1.0275 0.0197 30 1 -0.3634 0.5307 0.8800 31 1 -0.3634 0.4967 -0.8996 32 1 0.0963 -0.6684 -2.0586 33 1 -0.0084 -1.3538 -6.5545 34 1 4.0960 -1.6050 -5.3762 35 1 1.4453 -2.7736 -0.6603 36 1 3.1266 -2.6620 -1.2799 37 1 2.7088 -2.7080 1.3923 38 1 3.9091 -1.5666 0.7129 39 1 2.0001 -2.2374 3.5014 40 1 3.4426 -1.1948 3.5218 41 1 1.6814 -0.3887 9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122940628.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:16 Heat of formation + Delta-G solvation = -27.127600 kcal Electronic energy + Delta-G solvation = -26127.762109 eV Core-core repulsion = 22083.542638 eV Total energy + Delta-G solvation = -4044.219472 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.81473 -42.06261 -41.28171 -39.05640 -36.20389 -34.85696 -34.58646 -33.06304 -32.15718 -30.92263 -29.47165 -27.65503 -27.00131 -25.83283 -24.42841 -24.00627 -21.71873 -20.42515 -19.71747 -19.54737 -18.85357 -18.36788 -18.07095 -17.16288 -16.99094 -16.88839 -16.81289 -16.21567 -15.99853 -15.82752 -15.54072 -15.20572 -14.99549 -14.64263 -14.47812 -14.15505 -14.02057 -13.84911 -13.67691 -13.24221 -13.16769 -13.14502 -12.90696 -12.85686 -12.73463 -12.60566 -12.16812 -12.04447 -11.83888 -11.72346 -11.17271 -11.14167 -10.89366 -10.27762 -10.18329 -9.76314 -9.06786 -8.67298 -8.34757 -6.12933 -0.05609 -0.01552 1.20637 1.41923 1.42603 1.53770 1.56560 1.68789 2.11834 2.27335 2.67896 2.99474 2.99971 3.05881 3.18575 3.35603 3.52464 3.60873 3.82339 3.85181 3.90849 3.95077 4.11680 4.21556 4.27491 4.28451 4.44010 4.48281 4.64258 4.67142 4.72184 4.89024 4.97011 5.07639 5.17769 5.30735 5.39207 5.41884 5.60625 5.92497 6.19740 6.28306 6.36751 7.06568 7.11215 7.14512 8.74397 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.034129 B = 0.001919 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.207994 B =14586.541213 C =15155.315462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.129 3.871 3 H 0.076 0.924 4 C 0.169 3.831 5 H 0.115 0.885 6 N -0.683 5.683 7 C 0.549 3.451 8 N -0.566 5.566 9 C 0.173 3.827 10 C -0.079 4.079 11 F -0.129 7.129 12 C 0.175 3.825 13 N -0.553 5.553 14 C -0.129 4.129 15 C 0.093 3.907 16 N -0.611 5.611 17 C 0.550 3.450 18 O -0.559 6.559 19 C -0.121 4.121 20 S -0.150 6.150 21 C -0.545 4.545 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.088 0.912 32 H 0.421 0.579 33 H 0.203 0.797 34 H 0.206 0.794 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -5.908 -31.246 31.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.025 3.975 3 H 0.094 0.906 4 C 0.063 3.937 5 H 0.133 0.867 6 N -0.323 5.323 7 C 0.192 3.808 8 N -0.288 5.288 9 C 0.004 3.996 10 C -0.106 4.106 11 F -0.108 7.108 12 C 0.006 3.994 13 N -0.275 5.275 14 C -0.169 4.169 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.339 3.661 18 O -0.437 6.437 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.693 4.693 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.181 1.181 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.263 0.737 33 H 0.220 0.780 34 H 0.223 0.777 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.031 -4.196 -29.567 29.933 hybrid contribution 0.835 -1.462 -0.226 1.698 sum 2.866 -5.658 -29.793 30.461 Atomic orbital electron populations 1.22073 0.94696 1.02808 1.02892 1.21676 0.95251 0.96279 0.84320 0.90569 1.21782 0.91052 0.96261 0.84619 0.86740 1.44442 1.10897 1.75633 1.01289 1.19533 0.85310 0.88760 0.87190 1.67987 1.37019 1.22311 1.01486 1.23545 0.94875 0.88542 0.92605 1.19173 0.96191 1.13872 0.81380 1.91519 1.92399 1.92727 1.34179 1.23625 1.01777 0.88494 0.85472 1.68063 1.16906 1.21071 1.21458 1.23174 1.03086 0.96447 0.94144 1.22628 0.95702 0.88653 0.95932 1.48409 1.51361 1.31428 1.03509 1.19713 0.79801 0.84113 0.82518 1.90684 1.39484 1.30003 1.83493 1.23316 1.04752 1.02888 0.96226 1.85578 1.68446 1.42419 0.95789 1.23192 1.36481 1.15975 0.93652 0.89878 1.26130 0.95804 0.97901 0.99346 1.70182 1.38966 1.31466 1.14137 0.84954 0.77987 0.78204 0.76848 1.19287 1.20369 1.18136 0.91557 0.93162 0.89365 0.73678 0.78006 0.77725 0.90456 0.87378 0.89379 0.88937 0.87572 0.87439 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.64 7.95 71.98 0.57 -3.06 16 2 C 0.13 2.77 3.48 45.34 0.16 2.92 16 3 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.17 2.59 3.10 46.18 0.14 2.73 16 5 H 0.11 1.70 7.63 -2.39 -0.02 1.69 16 6 N -0.68 -10.41 5.13 -324.75 -1.66 -12.08 16 7 C 0.55 9.08 8.43 261.45 2.20 11.28 16 8 N -0.57 -9.19 10.46 -197.78 -2.07 -11.26 16 9 C 0.17 2.03 11.29 84.75 0.96 2.99 16 10 C -0.08 -0.90 7.38 22.53 0.17 -0.73 16 11 F -0.13 -1.55 17.29 44.97 0.78 -0.77 16 12 C 0.18 1.91 11.29 84.75 0.96 2.86 16 13 N -0.55 -8.20 9.27 -197.77 -1.83 -10.04 16 14 C -0.13 -1.76 6.77 31.99 0.22 -1.55 16 15 C 0.09 1.61 6.69 86.86 0.58 2.19 16 16 N -0.61 -15.82 3.08 -788.05 -2.43 -18.25 16 17 C 0.55 20.42 7.65 87.66 0.67 21.09 16 18 O -0.56 -25.68 14.77 -3.02 -0.04 -25.72 16 19 C -0.12 -4.78 5.16 71.24 0.37 -4.41 16 20 S -0.15 -8.28 20.57 -56.49 -1.16 -9.44 16 21 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 25 Si 1.00 43.32 29.55 68.60 2.03 45.35 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 H 0.07 1.36 8.08 -2.38 -0.02 1.34 16 30 H 0.05 1.50 6.77 -2.39 -0.02 1.48 16 31 H 0.09 1.46 6.67 -2.39 -0.02 1.45 16 32 H 0.42 6.20 5.84 -92.71 -0.54 5.66 16 33 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 34 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.49 7.48 -2.39 -0.02 1.47 16 38 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.11 3.82 7.85 -2.39 -0.02 3.80 16 40 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -77.29 362.10 2.53 -74.76 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 0.54 Total: 15.77 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 8.10 Total: 7.22 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -7.71 Total: -107.17 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.04 Total: -25.72 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.78 Total: -0.77 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.44 kcal Total: -77.29 2.53 -74.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940628.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.634 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds