Wall clock time and date at job start Tue Mar 31 2020 22:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87220 * 2 1 4 4 C 1.54325 * 109.88232 * 238.98549 * 2 1 3 5 5 H 1.08996 * 110.72152 * 99.69372 * 4 2 1 6 6 N 1.46505 * 110.72196 * 336.59710 * 4 2 1 7 7 C 1.38566 * 120.00048 * 154.99945 * 6 4 2 8 8 C 1.39463 * 120.51538 * 0.02562 * 7 6 4 9 9 C 1.38471 * 118.31251 * 179.97438 * 8 7 6 10 10 F 1.35096 * 120.43015 * 179.97438 * 9 8 7 11 11 N 1.32790 * 119.13845 * 359.75190 * 9 8 7 12 12 C 1.31763 * 120.96175 * 0.50880 * 11 9 8 13 13 N 1.31762 * 121.85945 * 359.47492 * 12 11 9 14 14 C 1.55159 * 102.94040 * 218.23450 * 4 2 1 15 15 C 1.54906 * 101.58387 * 35.50322 * 14 4 2 16 16 N 1.47018 * 110.01036 * 121.10101 * 2 1 3 17 17 C 1.34776 * 125.64753 * 298.39229 * 16 2 1 18 18 O 1.21282 * 120.00028 * 0.02562 * 17 16 2 19 19 C 1.50703 * 119.99928 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47062 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00282 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99658 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00339 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00423 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99914 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47015 * 90.00025 * 25 23 21 27 27 H 1.48504 * 109.47164 * 210.00007 * 25 23 21 28 28 H 1.48504 * 109.46995 * 330.00003 * 25 23 21 29 29 H 1.09008 * 109.47176 * 181.01531 * 1 2 3 30 30 H 1.08990 * 109.47367 * 301.01188 * 1 2 3 31 31 H 1.08995 * 109.47017 * 61.01880 * 1 2 3 32 32 H 0.97003 * 119.99659 * 335.00245 * 6 4 2 33 33 H 1.07997 * 120.84495 * 359.95852 * 8 7 6 34 34 H 1.08002 * 119.07334 * 179.76230 * 12 11 9 35 35 H 1.09007 * 111.00363 * 153.57633 * 14 4 2 36 36 H 1.08991 * 111.00481 * 277.42628 * 14 4 2 37 37 H 1.08997 * 110.36787 * 204.15580 * 15 14 4 38 38 H 1.08997 * 110.46081 * 81.87524 * 15 14 4 39 39 H 1.09000 * 109.47079 * 299.99562 * 19 17 16 40 40 H 1.08994 * 109.47315 * 60.00164 * 19 17 16 41 41 H 0.96996 * 120.00559 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 2.3475 -0.0433 -2.0223 6 7 1.0486 -1.6858 -1.7477 7 6 1.0613 -2.0658 -3.0802 8 6 2.0274 -1.5624 -3.9509 9 6 1.9980 -1.9731 -5.2730 10 9 2.9130 -1.5120 -6.1533 11 7 1.0613 -2.8297 -5.6632 12 6 0.1603 -3.2818 -4.8147 13 7 0.1523 -2.9169 -3.5486 14 6 3.2900 -1.5101 -0.6954 15 6 2.8196 -1.8770 0.7342 16 7 2.0331 -0.7136 1.1829 17 6 1.8125 -0.3619 2.4651 18 8 1.1474 0.6200 2.7188 19 6 2.3925 -1.1887 3.5836 20 16 1.9224 -0.4654 5.1749 21 6 2.7099 -1.5985 6.2706 22 1 3.2712 -2.4315 5.8741 23 6 2.6088 -1.4204 7.6434 24 7 3.1966 -2.2672 8.4620 25 14 1.6384 0.0209 8.3293 26 1 0.2237 -0.3846 8.5280 27 1 2.2217 0.4360 9.6304 28 1 1.6985 1.1570 7.3749 29 1 -0.3634 -1.0276 0.0182 30 1 -0.3633 0.5294 0.8807 31 1 -0.3633 0.4979 -0.8989 32 1 0.3734 -2.0408 -1.1485 33 1 2.7793 -0.8696 -3.6030 34 1 -0.5902 -3.9747 -5.1658 35 1 3.4888 -2.4062 -1.2834 36 1 4.1664 -0.8628 -0.6642 37 1 3.6779 -2.0298 1.3884 38 1 2.1962 -2.7708 0.7125 39 1 2.0080 -2.2067 3.5200 40 1 3.4790 -1.2046 3.4982 41 1 3.1256 -2.1430 9.4214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122940877.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:38 Heat of formation + Delta-G solvation = -9.088806 kcal Electronic energy + Delta-G solvation = -26421.890582 eV Core-core repulsion = 22378.453331 eV Total energy + Delta-G solvation = -4043.437251 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.57093 -41.46400 -40.43127 -38.17372 -35.77902 -33.35750 -32.49106 -32.27933 -31.53802 -30.49047 -28.67179 -26.41455 -25.66836 -24.86808 -23.99054 -23.07508 -21.20235 -19.34802 -19.26464 -18.56626 -17.76239 -17.17958 -16.72553 -16.62902 -16.21728 -16.11876 -15.56537 -15.12968 -15.03750 -14.87422 -14.72223 -14.23176 -14.21524 -13.97466 -13.82001 -13.54822 -13.15745 -12.88144 -12.81227 -12.44547 -12.03564 -11.92773 -11.75006 -11.45873 -11.31299 -11.25163 -11.16410 -11.05325 -10.67090 -10.28689 -9.91968 -9.90885 -9.60661 -9.05415 -8.83766 -8.78692 -8.56567 -6.98498 -6.33730 -4.06328 0.39844 0.73855 2.27182 2.55377 2.81345 2.94937 3.07758 3.26666 3.29043 3.45824 3.52255 3.72488 3.84324 4.01054 4.10949 4.28208 4.35887 4.58325 4.59983 4.68934 4.77673 4.79126 4.96109 5.01669 5.05328 5.08857 5.12319 5.27206 5.37299 5.45823 5.53316 5.62514 5.70390 5.79373 5.91963 6.00811 6.07575 6.23380 6.56416 6.91287 7.39486 7.63968 7.89121 8.29771 8.36436 9.12196 10.75421 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.030362 B = 0.002092 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.985769 B =13382.797469 C =13530.413904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.093 0.907 4 C 0.137 3.863 5 H 0.109 0.891 6 N -0.690 5.690 7 C 0.466 3.534 8 C -0.320 4.320 9 C 0.385 3.615 10 F -0.102 7.102 11 N -0.595 5.595 12 C 0.378 3.622 13 N -0.583 5.583 14 C -0.148 4.148 15 C 0.099 3.901 16 N -0.623 5.623 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.879 5.879 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.416 0.584 33 H 0.155 0.845 34 H 0.208 0.792 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 0.152 -27.255 27.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.111 0.889 4 C 0.031 3.969 5 H 0.127 0.873 6 N -0.323 5.323 7 C 0.222 3.778 8 C -0.350 4.350 9 C 0.227 3.773 10 F -0.081 7.081 11 N -0.321 5.321 12 C 0.089 3.911 13 N -0.308 5.308 14 C -0.187 4.187 15 C -0.024 4.024 16 N -0.361 5.361 17 C 0.339 3.661 18 O -0.386 6.386 19 C -0.269 4.269 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.257 0.743 33 H 0.172 0.828 34 H 0.224 0.776 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.224 1.144 -26.826 27.043 hybrid contribution 1.079 -0.333 0.545 1.254 sum -2.145 0.811 -26.281 26.381 Atomic orbital electron populations 1.22080 0.94154 1.02223 1.03644 1.21698 0.95397 0.96601 0.83439 0.88945 1.22155 0.87971 0.90817 0.95966 0.87300 1.44776 1.34004 1.47681 1.05807 1.18263 0.87197 0.86446 0.85872 1.21818 1.07359 1.12313 0.93527 1.18011 0.85353 0.89332 0.84642 1.91665 1.62245 1.85480 1.68735 1.67867 1.07194 1.16129 1.40863 1.24561 0.91862 0.91992 0.82693 1.68039 1.27112 1.17941 1.17678 1.23326 0.97542 1.01850 0.96016 1.22325 0.95970 0.88991 0.95144 1.48597 1.53945 1.28914 1.04661 1.19994 0.79802 0.84982 0.81355 1.90705 1.38490 1.26912 1.82488 1.23266 1.04075 1.02418 0.97128 1.84796 1.71159 1.39998 0.95515 1.22287 1.38071 1.13742 0.92834 0.89389 1.24712 0.94533 0.96224 0.95830 1.69930 1.42144 1.35872 1.03617 0.86738 0.80837 0.84074 0.80209 1.19191 1.19896 1.15939 0.92555 0.90120 0.91552 0.74315 0.82772 0.77606 0.89193 0.88790 0.89617 0.91202 0.88597 0.88513 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.49 37.16 0.32 -1.23 16 2 C 0.13 1.18 3.42 -66.95 -0.23 0.95 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.14 0.81 2.92 -66.09 -0.19 0.61 16 5 H 0.11 0.46 6.41 -51.93 -0.33 0.13 16 6 N -0.69 -4.54 4.66 -52.03 -0.24 -4.79 16 7 C 0.47 3.59 7.71 -154.77 -1.19 2.39 16 8 C -0.32 -2.28 9.29 -39.04 -0.36 -2.64 16 9 C 0.38 3.37 8.50 -17.05 -0.14 3.22 16 10 F -0.10 -0.91 17.30 2.25 0.04 -0.88 16 11 N -0.59 -5.49 10.45 -14.98 -0.16 -5.65 16 12 C 0.38 2.84 12.28 -92.21 -1.13 1.71 16 13 N -0.58 -4.94 10.47 -13.84 -0.14 -5.08 16 14 C -0.15 -0.84 6.77 -24.58 -0.17 -1.00 16 15 C 0.10 0.83 6.67 -2.53 -0.02 0.81 16 16 N -0.62 -7.13 3.07 -163.02 -0.50 -7.63 16 17 C 0.55 9.11 7.66 -10.98 -0.08 9.02 16 18 O -0.51 -10.27 14.92 5.56 0.08 -10.18 16 19 C -0.12 -2.18 5.16 36.01 0.19 -2.00 16 20 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 21 C -0.52 -14.69 10.04 30.94 0.31 -14.38 16 22 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 24 N -0.88 -26.13 13.97 55.49 0.78 -25.36 16 25 Si 0.86 21.41 27.74 -169.99 -4.71 16.69 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 29 H 0.06 0.51 6.24 -51.92 -0.32 0.18 16 30 H 0.08 1.03 6.91 -51.93 -0.36 0.67 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.42 3.01 6.62 -40.82 -0.27 2.74 16 33 H 0.15 0.77 6.31 -52.49 -0.33 0.44 16 34 H 0.21 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.73 7.47 -51.93 -0.39 0.34 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.10 1.67 8.14 -51.91 -0.42 1.25 16 40 H 0.10 1.66 7.85 -51.92 -0.41 1.26 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -34.00 357.53 -9.22 -43.22 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.95 Total: -0.42 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -2.81 Total: 0.13 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: -0.27 Total: -48.49 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.00 -9.22 -43.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122940877.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.135 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds