Wall clock time and date at job start Tue Mar 31 2020 23:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.00020 * 2 1 4 4 C 1.54327 * 109.87993 * 238.90626 * 2 1 3 5 5 H 1.09002 * 110.72047 * 99.85258 * 4 2 1 6 6 N 1.46495 * 110.72340 * 336.75205 * 4 2 1 7 7 C 1.39119 * 120.00389 * 155.00052 * 6 4 2 8 8 N 1.32563 * 120.10522 * 359.97438 * 7 6 4 9 9 C 1.32308 * 119.94024 * 179.75806 * 8 7 6 10 10 C 1.38065 * 120.16660 * 0.52412 * 9 8 7 11 11 N 1.32354 * 120.21994 * 359.47232 * 10 9 8 12 12 C 1.32069 * 120.05447 * 0.26112 * 11 10 9 13 13 F 1.35094 * 120.08539 * 179.97438 * 12 11 10 14 14 C 1.55156 * 102.94347 * 218.38800 * 4 2 1 15 15 C 1.54912 * 101.58117 * 35.49989 * 14 4 2 16 16 N 1.47024 * 109.88572 * 121.10185 * 2 1 3 17 17 C 1.34775 * 125.64164 * 298.31649 * 16 2 1 18 18 O 1.21273 * 120.00398 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99583 * 180.02562 * 17 16 2 20 20 S 1.80999 * 109.46836 * 180.02562 * 19 17 16 21 21 C 1.76204 * 99.99945 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00090 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00060 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00043 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99903 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47254 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46936 * 120.00021 * 25 23 21 28 28 H 1.48499 * 109.47177 * 240.00221 * 25 23 21 29 29 H 1.09001 * 109.47390 * 181.09283 * 1 2 3 30 30 H 1.09004 * 109.46955 * 301.08954 * 1 2 3 31 31 H 1.08998 * 109.47311 * 61.09453 * 1 2 3 32 32 H 0.97001 * 119.99771 * 335.00467 * 6 4 2 33 33 H 1.08000 * 119.91804 * 180.25536 * 9 8 7 34 34 H 1.08002 * 119.89335 * 179.75852 * 10 9 8 35 35 H 1.09001 * 111.00676 * 153.57625 * 14 4 2 36 36 H 1.09003 * 111.00983 * 277.42920 * 14 4 2 37 37 H 1.09000 * 110.37127 * 204.14915 * 15 14 4 38 38 H 1.09009 * 110.45454 * 81.87591 * 15 14 4 39 39 H 1.09007 * 109.47235 * 299.99886 * 19 17 16 40 40 H 1.08989 * 109.47224 * 60.00429 * 19 17 16 41 41 H 0.97005 * 120.00317 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0547 -0.7495 -1.2428 5 1 2.3499 -0.0460 -2.0213 6 7 1.0471 -1.6855 -1.7475 7 6 1.0607 -2.0677 -3.0851 8 7 1.9843 -1.5858 -3.9050 9 6 1.9971 -1.9552 -5.1754 10 6 1.0443 -2.8332 -5.6522 11 7 0.1192 -3.3184 -4.8394 12 6 0.1014 -2.9596 -3.5685 13 9 -0.8428 -3.4540 -2.7384 14 6 3.2875 -1.5142 -0.6926 15 6 2.8145 -1.8794 0.7367 16 7 2.0300 -0.7142 1.1838 17 6 1.8086 -0.3613 2.4656 18 8 1.1453 0.6220 2.7180 19 6 2.3853 -1.1889 3.5853 20 16 1.9148 -0.4638 5.1755 21 6 2.6985 -1.5981 6.2728 22 1 3.2592 -2.4321 5.8774 23 6 2.5960 -1.4192 7.6454 24 7 1.9131 -0.4024 8.1274 25 14 3.4274 -2.6213 8.8086 26 1 4.1273 -3.6682 8.0215 27 1 4.4116 -1.8950 9.6507 28 1 2.4048 -3.2562 9.6784 29 1 -0.3634 -1.0275 0.0196 30 1 -0.3633 0.5307 0.8801 31 1 -0.3634 0.4967 -0.8996 32 1 0.3703 -2.0387 -1.1491 33 1 2.7522 -1.5656 -5.8420 34 1 1.0565 -3.1288 -6.6909 35 1 3.4851 -2.4110 -1.2798 36 1 4.1654 -0.8689 -0.6605 37 1 3.6716 -2.0339 1.3921 38 1 2.1890 -2.7719 0.7145 39 1 1.9988 -2.2062 3.5216 40 1 3.4718 -1.2072 3.5011 41 1 1.8418 -0.2771 9.0867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122986984.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:00 Heat of formation + Delta-G solvation = -32.092150 kcal Electronic energy + Delta-G solvation = -26652.146292 eV Core-core repulsion = 22607.711542 eV Total energy + Delta-G solvation = -4044.434751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.05982 -42.03070 -41.31391 -39.13814 -36.48348 -34.68351 -34.60219 -33.02542 -32.29961 -30.77523 -29.53043 -27.67622 -27.07636 -25.46663 -24.74589 -23.92170 -21.76469 -20.40970 -19.70018 -19.48986 -19.02825 -18.75186 -17.92896 -17.51300 -17.34420 -16.90011 -16.58521 -16.16493 -16.01720 -15.58590 -15.32758 -15.04574 -14.93337 -14.79244 -14.61761 -14.41060 -14.15767 -13.96314 -13.80603 -13.35354 -13.17145 -13.03158 -12.92611 -12.70216 -12.68799 -12.56215 -12.27957 -12.20134 -11.95926 -11.72058 -11.17491 -11.15727 -10.90531 -10.29432 -10.26389 -9.77362 -8.90323 -8.69087 -8.36515 -6.14737 -0.21614 0.12015 1.21946 1.40176 1.43136 1.55136 1.55353 1.77008 2.04265 2.25494 2.47469 2.63407 2.97772 3.15333 3.23800 3.26822 3.35745 3.49807 3.85329 3.92995 4.08681 4.11452 4.16292 4.22368 4.31006 4.34219 4.43673 4.53430 4.57997 4.62375 4.73052 4.86898 4.96993 5.02606 5.14738 5.29270 5.37487 5.40308 5.83376 5.90492 6.18225 6.33867 6.38472 6.78172 7.04905 7.10678 8.72931 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024159 B = 0.002204 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.686646 B =12700.026096 C =12901.955781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.088 0.912 4 C 0.163 3.837 5 H 0.127 0.873 6 N -0.697 5.697 7 C 0.352 3.648 8 N -0.486 5.486 9 C 0.112 3.888 10 C 0.014 3.986 11 N -0.460 5.460 12 C 0.163 3.837 13 F -0.123 7.123 14 C -0.127 4.127 15 C 0.089 3.911 16 N -0.612 5.612 17 C 0.550 3.450 18 O -0.558 6.558 19 C -0.121 4.121 20 S -0.149 6.149 21 C -0.544 4.544 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.257 1.257 27 H -0.273 1.273 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.415 0.585 33 H 0.221 0.779 34 H 0.210 0.790 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -5.714 -31.578 32.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.022 3.978 3 H 0.106 0.894 4 C 0.057 3.943 5 H 0.145 0.855 6 N -0.332 5.332 7 C 0.111 3.889 8 N -0.209 5.209 9 C -0.049 4.049 10 C -0.147 4.147 11 N -0.179 5.179 12 C -0.001 4.001 13 F -0.102 7.102 14 C -0.166 4.166 15 C -0.033 4.033 16 N -0.348 5.348 17 C 0.338 3.662 18 O -0.436 6.436 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.692 4.692 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.180 1.180 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.238 0.762 34 H 0.227 0.773 35 H 0.116 0.884 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.293 -4.037 -30.857 31.294 hybrid contribution 0.170 -1.843 1.346 2.288 sum 3.463 -5.880 -29.511 30.289 Atomic orbital electron populations 1.21979 0.94830 1.01900 1.02646 1.21936 0.94940 0.96952 0.83977 0.89429 1.21865 0.87335 0.90874 0.94191 0.85524 1.44791 1.34425 1.48914 1.05062 1.19022 0.90758 0.91087 0.88004 1.68212 1.21838 1.25495 1.05400 1.24310 0.97774 0.92182 0.90672 1.23903 0.91510 0.97801 1.01492 1.67609 1.25143 1.23064 1.02064 1.18546 0.92123 1.01149 0.88254 1.91580 1.63059 1.86790 1.68819 1.23181 0.97758 1.02249 0.93431 1.22620 0.95742 0.87871 0.97044 1.48528 1.53177 1.29409 1.03683 1.19687 0.79563 0.84351 0.82623 1.90686 1.40679 1.28735 1.83500 1.23316 1.04707 1.02753 0.96410 1.85568 1.70882 1.39964 0.95764 1.23209 1.38199 1.14151 0.93659 0.90008 1.26133 0.95773 0.97947 0.99342 1.70186 1.40157 1.30268 1.14130 0.84903 0.77900 0.77715 0.77409 1.18032 1.19845 1.19957 0.92363 0.93721 0.89892 0.74477 0.76242 0.77335 0.88406 0.87921 0.89420 0.90759 0.87932 0.87527 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 8.48 71.98 0.61 -2.90 16 2 C 0.13 2.63 3.43 45.34 0.16 2.78 16 3 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 4 C 0.16 2.31 3.22 46.18 0.15 2.45 16 5 H 0.13 1.58 7.52 -2.39 -0.02 1.56 16 6 N -0.70 -10.48 4.66 -318.28 -1.48 -11.96 16 7 C 0.35 5.59 7.50 133.09 1.00 6.58 16 8 N -0.49 -6.09 9.36 -192.42 -1.80 -7.89 16 9 C 0.11 0.74 11.21 84.58 0.95 1.69 16 10 C 0.01 0.12 11.21 84.57 0.95 1.07 16 11 N -0.46 -8.14 10.50 -195.79 -2.06 -10.20 16 12 C 0.16 3.13 8.47 84.99 0.72 3.85 16 13 F -0.12 -2.70 16.68 44.97 0.75 -1.95 16 14 C -0.13 -1.59 6.77 31.99 0.22 -1.37 16 15 C 0.09 1.60 6.67 86.86 0.58 2.18 16 16 N -0.61 -15.79 3.06 -788.06 -2.41 -18.21 16 17 C 0.55 20.52 7.66 87.66 0.67 21.19 16 18 O -0.56 -25.74 14.91 -3.01 -0.04 -25.79 16 19 C -0.12 -4.85 5.16 71.24 0.37 -4.48 16 20 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 21 C -0.54 -31.13 9.50 67.95 0.65 -30.48 16 22 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.73 5.49 84.86 0.47 1.20 16 24 N -0.91 -56.06 13.22 21.65 0.29 -55.77 16 25 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 26 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 29 H 0.06 1.23 6.24 -2.39 -0.01 1.22 16 30 H 0.04 1.35 6.91 -2.38 -0.02 1.34 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 6.77 5.98 -92.71 -0.55 6.22 16 33 H 0.22 -0.53 8.06 -2.91 -0.02 -0.56 16 34 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.09 1.53 7.48 -2.39 -0.02 1.51 16 38 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.10 3.80 8.14 -2.39 -0.02 3.78 16 40 H 0.11 3.87 7.85 -2.40 -0.02 3.86 16 41 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -80.52 361.64 2.10 -78.42 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.52 Total: 13.39 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 7.47 Total: 3.76 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -7.47 Total: -104.03 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.75 Total: -1.95 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -80.52 2.10 -78.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122986984.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.324 kcal (2) G-P(sol) polarization free energy of solvation -80.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds