Wall clock time and date at job start Tue Mar 31 2020 22:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.99479 * 2 1 4 4 C 1.54332 * 109.98814 * 238.96307 * 2 1 3 5 5 C 1.55162 * 103.01758 * 218.66634 * 4 2 1 6 6 H 1.08995 * 111.03714 * 153.39459 * 5 4 2 7 7 N 1.46496 * 111.00435 * 277.23593 * 5 4 2 8 8 C 1.39153 * 119.99976 * 198.65340 * 7 5 4 9 9 C 1.39212 * 120.06086 * 359.72134 * 8 7 5 10 10 N 1.32005 * 119.92813 * 179.71240 * 9 8 7 11 11 C 1.32393 * 120.05824 * 0.56501 * 10 9 8 12 12 F 1.35110 * 119.94041 * 179.73488 * 11 10 9 13 13 C 1.38462 * 120.12605 * 359.70813 * 11 10 9 14 14 N 1.32222 * 120.06536 * 0.02562 * 13 11 10 15 15 C 1.54919 * 101.57945 * 35.30770 * 5 4 2 16 16 N 1.47021 * 109.87854 * 121.09704 * 2 1 3 17 17 C 1.34776 * 125.64521 * 298.38945 * 16 2 1 18 18 O 1.21280 * 120.00458 * 359.72037 * 17 16 2 19 19 C 1.50702 * 119.99564 * 179.72273 * 17 16 2 20 20 S 1.81008 * 109.46925 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99642 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00322 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99700 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99693 * 25 23 21 29 29 H 1.09004 * 109.46989 * 300.36093 * 1 2 3 30 30 H 1.08999 * 109.46644 * 60.35291 * 1 2 3 31 31 H 1.08991 * 109.46971 * 180.35834 * 1 2 3 32 32 H 1.08993 * 110.85055 * 100.19889 * 4 2 1 33 33 H 1.09000 * 110.51653 * 336.97782 * 4 2 1 34 34 H 0.97003 * 120.00258 * 18.64558 * 7 5 4 35 35 H 1.08002 * 120.03544 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.97094 * 179.97438 * 13 11 10 37 37 H 1.09004 * 110.36173 * 204.15026 * 15 5 4 38 38 H 1.09000 * 110.36389 * 81.82988 * 15 5 4 39 39 H 1.08998 * 109.47573 * 60.00437 * 19 17 16 40 40 H 1.09000 * 109.46955 * 299.99406 * 19 17 16 41 41 H 0.97004 * 120.00251 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2864 -1.5184 -0.6914 6 1 3.4813 -2.4156 -1.2788 7 7 4.4699 -0.6562 -0.6463 8 6 5.7390 -1.2206 -0.5619 9 6 5.8852 -2.6042 -0.5145 10 7 7.0906 -3.1370 -0.4401 11 6 8.1592 -2.3565 -0.3995 12 9 9.3916 -2.9042 -0.3180 13 6 8.0163 -0.9799 -0.4408 14 7 6.8115 -0.4411 -0.5205 15 6 2.8098 -1.8825 0.7369 16 7 2.0300 -0.7141 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6239 2.7179 19 6 2.3784 -1.1933 3.5855 20 16 1.9076 -0.4683 5.1757 21 6 2.6843 -1.6072 6.2731 22 1 3.2424 -2.4430 5.8778 23 6 2.5788 -1.4302 7.6458 24 7 1.8991 -0.4113 8.1277 25 14 3.4029 -2.6371 8.8092 26 1 4.1002 -3.6858 8.0222 27 1 2.3757 -3.2697 9.6753 28 1 4.3874 -1.9158 9.6551 29 1 -0.3633 0.5195 0.8868 30 1 -0.3632 0.5084 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0191 33 1 1.3053 -1.4406 -1.6197 34 1 4.3689 0.3081 -0.6753 35 1 5.0135 -3.2412 -0.5435 36 1 8.8897 -0.3456 -0.4070 37 1 3.6655 -2.0412 1.3933 38 1 2.1800 -2.7718 0.7115 39 1 3.4651 -1.2159 3.5036 40 1 1.9878 -2.2088 3.5197 41 1 1.4714 0.2158 7.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123157902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:31 Heat of formation + Delta-G solvation = -18.232067 kcal Electronic energy + Delta-G solvation = -26700.856640 eV Core-core repulsion = 22657.022907 eV Total energy + Delta-G solvation = -4043.833732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.19498 -41.48191 -40.32095 -37.98578 -35.63447 -34.47300 -32.56044 -32.40524 -31.14907 -29.15568 -28.80837 -26.38739 -25.39940 -24.88651 -24.00596 -22.70027 -21.34528 -19.21704 -18.86029 -18.38215 -18.21310 -18.02320 -16.95119 -16.56317 -16.38693 -15.58738 -15.26269 -15.23211 -14.88038 -14.58618 -14.23290 -14.15554 -13.94216 -13.87078 -13.84421 -13.32272 -13.03256 -12.69004 -12.47871 -12.39492 -12.15581 -12.05120 -11.96722 -11.81878 -11.70116 -11.55276 -11.12076 -10.91944 -10.71153 -10.22433 -9.65643 -9.62477 -9.54875 -9.03989 -8.75746 -8.26435 -8.25617 -6.71370 -6.65312 -4.03734 0.38053 0.71046 2.34863 2.67564 2.87671 3.14416 3.21325 3.29159 3.38153 3.38856 3.52758 3.79268 3.84209 3.98895 4.00827 4.21783 4.34641 4.42200 4.72242 4.74093 4.83378 4.86056 4.97117 5.06502 5.18526 5.19604 5.24753 5.28720 5.38840 5.40381 5.48685 5.70070 5.84568 5.86788 5.94229 6.10154 6.17312 6.34194 6.84496 6.88288 7.36414 7.45402 7.90082 8.37273 8.47282 9.23805 10.78758 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008405 B = 0.003479 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.417127 B = 8045.991216 C =10773.073889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.131 4.131 5 C 0.134 3.866 6 H 0.110 0.890 7 N -0.696 5.696 8 C 0.352 3.648 9 C 0.028 3.972 10 N -0.428 5.428 11 C 0.184 3.816 12 F -0.109 7.109 13 C 0.100 3.900 14 N -0.477 5.477 15 C 0.081 3.919 16 N -0.619 5.619 17 C 0.550 3.450 18 O -0.511 6.511 19 C -0.125 4.125 20 S -0.115 6.115 21 C -0.607 4.607 22 H 0.066 0.934 23 C 0.036 3.964 24 N -0.884 5.884 25 Si 1.089 2.911 26 H -0.288 1.288 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.412 0.588 35 H 0.175 0.825 36 H 0.182 0.818 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.648 -3.799 -25.259 26.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.169 4.169 5 C 0.028 3.972 6 H 0.128 0.872 7 N -0.329 5.329 8 C 0.113 3.887 9 C -0.141 4.141 10 N -0.147 5.147 11 C 0.028 3.972 12 F -0.088 7.088 13 C -0.063 4.063 14 N -0.199 5.199 15 C -0.044 4.044 16 N -0.357 5.357 17 C 0.338 3.662 18 O -0.385 6.385 19 C -0.276 4.276 20 S 0.111 5.889 21 C -0.755 4.755 22 H 0.084 0.916 23 C -0.174 4.174 24 N -0.519 5.519 25 Si 0.915 3.085 26 H -0.214 1.214 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.249 0.751 35 H 0.192 0.808 36 H 0.199 0.801 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.109 0.891 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.798 -2.761 -23.196 23.848 hybrid contribution 0.916 -0.794 -1.801 2.171 sum 5.713 -3.555 -24.997 25.887 Atomic orbital electron populations 1.22141 0.94332 1.02471 1.03204 1.21522 0.95139 0.96388 0.83947 0.90673 1.23063 0.96146 1.00340 0.97343 1.22248 0.84347 0.94441 0.96175 0.87240 1.44406 1.00433 1.09666 1.78370 1.19360 0.87038 0.90334 0.91981 1.22932 0.94705 0.91798 1.04675 1.67565 0.98386 1.40062 1.08642 1.18781 0.81456 0.89552 1.07455 1.91631 1.36659 1.86747 1.93800 1.23308 0.95918 0.91756 0.95293 1.68025 0.97454 1.37891 1.16528 1.22892 0.96357 0.89808 0.95335 1.48496 1.53984 1.28315 1.04873 1.19962 0.79710 0.85083 0.81404 1.90704 1.38564 1.26702 1.82482 1.23295 1.03586 1.02376 0.98304 1.84811 1.70979 1.39308 0.93806 1.23748 1.41679 1.15053 0.95056 0.91579 1.26049 0.95967 0.99463 0.95935 1.70742 1.29491 1.12664 1.38975 0.83262 0.76024 0.74400 0.74792 1.21383 1.20816 1.20833 0.90716 0.91838 0.92373 0.88983 0.88222 0.75072 0.80791 0.80131 0.89909 0.89774 0.89347 0.89094 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.11 37.16 0.34 -1.29 16 2 C 0.13 1.26 3.45 -66.94 -0.23 1.03 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -0.65 6.06 -24.89 -0.15 -0.80 16 5 C 0.13 0.74 2.94 -65.78 -0.19 0.55 16 6 H 0.11 0.33 6.71 -51.93 -0.35 -0.02 16 7 N -0.70 -5.11 5.40 -51.73 -0.28 -5.39 16 8 C 0.35 3.23 7.67 -154.63 -1.19 2.05 16 9 C 0.03 0.25 10.40 -17.12 -0.18 0.07 16 10 N -0.43 -4.81 10.50 -13.24 -0.14 -4.95 16 11 C 0.18 1.97 8.43 -17.23 -0.15 1.83 16 12 F -0.11 -1.19 17.29 2.25 0.04 -1.15 16 13 C 0.10 0.92 11.20 -17.30 -0.19 0.73 16 14 N -0.48 -4.93 10.53 -12.17 -0.13 -5.06 16 15 C 0.08 0.69 6.38 -2.53 -0.02 0.68 16 16 N -0.62 -7.62 3.06 -163.01 -0.50 -8.12 16 17 C 0.55 9.94 7.66 -10.98 -0.08 9.86 16 18 O -0.51 -11.13 14.91 5.56 0.08 -11.04 16 19 C -0.12 -2.51 5.16 36.01 0.19 -2.33 16 20 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 21 C -0.61 -17.54 9.50 30.94 0.29 -17.25 16 22 H 0.07 1.85 7.80 -52.49 -0.41 1.44 16 23 C 0.04 1.06 5.49 -17.43 -0.10 0.96 16 24 N -0.88 -27.54 13.67 55.49 0.76 -26.78 16 25 Si 1.09 25.19 29.92 -169.99 -5.09 20.10 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 1.03 6.89 -51.93 -0.36 0.67 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.35 7.84 -51.93 -0.41 -0.05 16 34 H 0.41 3.14 8.75 -40.82 -0.36 2.79 16 35 H 0.18 1.03 6.32 -52.49 -0.33 0.70 16 36 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.08 0.82 7.48 -51.93 -0.39 0.43 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.72 7.85 -51.92 -0.41 1.31 16 40 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.28 8.84 7.13 -40.82 -0.29 8.55 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -36.81 363.31 -8.59 -45.40 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.05 Total: 0.63 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -1.66 Total: -3.90 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.29 Total: -50.30 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.09 Total: 20.10 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.81 -8.59 -45.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.166 kcal (2) G-P(sol) polarization free energy of solvation -36.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds