Wall clock time and date at job start Tue Mar 31 2020 22:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.99479 * 2 1 4 4 C 1.54332 * 109.98814 * 238.96307 * 2 1 3 5 5 C 1.55162 * 103.01758 * 218.66634 * 4 2 1 6 6 H 1.08995 * 111.03714 * 153.39459 * 5 4 2 7 7 N 1.46496 * 111.00435 * 277.23593 * 5 4 2 8 8 C 1.39153 * 119.99976 * 198.65340 * 7 5 4 9 9 C 1.39212 * 120.06086 * 359.72134 * 8 7 5 10 10 N 1.32005 * 119.92813 * 179.71240 * 9 8 7 11 11 C 1.32393 * 120.05824 * 0.56501 * 10 9 8 12 12 F 1.35110 * 119.94041 * 179.73488 * 11 10 9 13 13 C 1.38462 * 120.12605 * 359.70813 * 11 10 9 14 14 N 1.32222 * 120.06536 * 0.02562 * 13 11 10 15 15 C 1.54919 * 101.57945 * 35.30770 * 5 4 2 16 16 N 1.47021 * 109.87854 * 121.09704 * 2 1 3 17 17 C 1.34776 * 125.64521 * 298.38945 * 16 2 1 18 18 O 1.21280 * 120.00458 * 359.72037 * 17 16 2 19 19 C 1.50702 * 119.99564 * 179.72273 * 17 16 2 20 20 S 1.81008 * 109.46925 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99767 * 179.97438 * 20 19 17 22 22 H 1.07996 * 120.00286 * 0.02562 * 21 20 19 23 23 C 1.38802 * 119.99642 * 180.02562 * 21 20 19 24 24 N 1.31625 * 120.00322 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 119.99881 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99700 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99693 * 25 23 21 29 29 H 1.09004 * 109.46989 * 300.36093 * 1 2 3 30 30 H 1.08999 * 109.46644 * 60.35291 * 1 2 3 31 31 H 1.08991 * 109.46971 * 180.35834 * 1 2 3 32 32 H 1.08993 * 110.85055 * 100.19889 * 4 2 1 33 33 H 1.09000 * 110.51653 * 336.97782 * 4 2 1 34 34 H 0.97003 * 120.00258 * 18.64558 * 7 5 4 35 35 H 1.08002 * 120.03544 * 0.02562 * 9 8 7 36 36 H 1.07998 * 119.97094 * 179.97438 * 13 11 10 37 37 H 1.09004 * 110.36173 * 204.15026 * 15 5 4 38 38 H 1.09000 * 110.36389 * 81.82988 * 15 5 4 39 39 H 1.08998 * 109.47573 * 60.00437 * 19 17 16 40 40 H 1.09000 * 109.46955 * 299.99406 * 19 17 16 41 41 H 0.97004 * 120.00251 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2427 5 6 3.2864 -1.5184 -0.6914 6 1 3.4813 -2.4156 -1.2788 7 7 4.4699 -0.6562 -0.6463 8 6 5.7390 -1.2206 -0.5619 9 6 5.8852 -2.6042 -0.5145 10 7 7.0906 -3.1370 -0.4401 11 6 8.1592 -2.3565 -0.3995 12 9 9.3916 -2.9042 -0.3180 13 6 8.0163 -0.9799 -0.4408 14 7 6.8115 -0.4411 -0.5205 15 6 2.8098 -1.8825 0.7369 16 7 2.0300 -0.7141 1.1839 17 6 1.8074 -0.3620 2.4657 18 8 1.1475 0.6239 2.7179 19 6 2.3784 -1.1933 3.5855 20 16 1.9076 -0.4683 5.1757 21 6 2.6843 -1.6072 6.2731 22 1 3.2424 -2.4430 5.8778 23 6 2.5788 -1.4302 7.6458 24 7 1.8991 -0.4113 8.1277 25 14 3.4029 -2.6371 8.8092 26 1 4.1002 -3.6858 8.0222 27 1 2.3757 -3.2697 9.6753 28 1 4.3874 -1.9158 9.6551 29 1 -0.3633 0.5195 0.8868 30 1 -0.3632 0.5084 -0.8932 31 1 -0.3633 -1.0276 0.0064 32 1 2.3597 -0.0450 -2.0191 33 1 1.3053 -1.4406 -1.6197 34 1 4.3689 0.3081 -0.6753 35 1 5.0135 -3.2412 -0.5435 36 1 8.8897 -0.3456 -0.4070 37 1 3.6655 -2.0412 1.3933 38 1 2.1800 -2.7718 0.7115 39 1 3.4651 -1.2159 3.5036 40 1 1.9878 -2.2088 3.5197 41 1 1.4714 0.2158 7.5236 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123157902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:31 Heat of formation + Delta-G solvation = -45.220569 kcal Electronic energy + Delta-G solvation = -26702.026949 eV Core-core repulsion = 22657.022907 eV Total energy + Delta-G solvation = -4045.004042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.96668 -42.17847 -41.29979 -39.09173 -36.42437 -35.20118 -34.78981 -33.44903 -31.85442 -30.43322 -29.64337 -27.14636 -27.05998 -26.10679 -24.73269 -23.63140 -22.00147 -20.68311 -19.93881 -19.57061 -19.05571 -18.71589 -18.17193 -17.33242 -17.30614 -16.90642 -16.46041 -16.00979 -15.91667 -15.76187 -15.50026 -15.28416 -14.98690 -14.78059 -14.63828 -14.60055 -14.29878 -13.96641 -13.86507 -13.65290 -13.26082 -13.03522 -12.79237 -12.78779 -12.64425 -12.37725 -12.24856 -11.96743 -11.82864 -11.60371 -11.37359 -11.15233 -10.97177 -10.37420 -10.35920 -9.78987 -8.96791 -8.92717 -8.90761 -6.32290 -0.29254 -0.01427 1.11715 1.46588 1.48294 1.58689 1.75092 1.76584 1.97108 2.29226 2.45481 2.51928 2.98552 3.03611 3.17006 3.28532 3.35531 3.40674 3.69933 3.75197 3.89552 4.04385 4.07138 4.12666 4.25077 4.31013 4.33113 4.44556 4.55194 4.64360 4.73877 4.81167 4.93479 5.08945 5.19725 5.28434 5.46458 5.58321 5.59724 6.11191 6.20004 6.21425 6.29155 6.70472 7.01622 7.04203 8.46861 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008405 B = 0.003479 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3330.417127 B = 8045.991216 C =10773.073889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.061 0.939 4 C -0.111 4.111 5 C 0.141 3.859 6 H 0.152 0.848 7 N -0.692 5.692 8 C 0.350 3.650 9 C 0.032 3.968 10 N -0.453 5.453 11 C 0.161 3.839 12 F -0.117 7.117 13 C 0.104 3.896 14 N -0.501 5.501 15 C 0.067 3.933 16 N -0.606 5.606 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.100 4.100 20 S -0.192 6.192 21 C -0.614 4.614 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.912 5.912 25 Si 1.140 2.860 26 H -0.265 1.265 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.027 0.973 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.410 0.590 35 H 0.206 0.794 36 H 0.205 0.795 37 H 0.070 0.930 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -5.978 -27.921 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.148 4.148 5 C 0.036 3.964 6 H 0.169 0.831 7 N -0.323 5.323 8 C 0.110 3.890 9 C -0.138 4.138 10 N -0.172 5.172 11 C 0.005 3.995 12 F -0.097 7.097 13 C -0.058 4.058 14 N -0.224 5.224 15 C -0.056 4.056 16 N -0.341 5.341 17 C 0.334 3.666 18 O -0.439 6.439 19 C -0.251 4.251 20 S 0.034 5.966 21 C -0.761 4.761 22 H 0.090 0.910 23 C -0.220 4.220 24 N -0.547 5.547 25 Si 0.958 3.042 26 H -0.189 1.189 27 H -0.197 1.197 28 H -0.200 1.200 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.147 0.853 34 H 0.247 0.753 35 H 0.223 0.777 36 H 0.222 0.778 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.125 0.875 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.264 -4.962 -25.939 26.929 hybrid contribution 0.720 -0.094 -1.130 1.344 sum 5.984 -5.056 -27.069 28.180 Atomic orbital electron populations 1.22097 0.94651 1.02713 1.02265 1.21832 0.94978 0.96422 0.84586 0.92061 1.23067 0.96029 1.00687 0.95058 1.22475 0.83739 0.95762 0.94450 0.83067 1.44588 1.00346 1.09914 1.77454 1.19576 0.87393 0.90648 0.91414 1.23404 0.94873 0.92034 1.03497 1.67550 0.99242 1.40937 1.09437 1.18964 0.81292 0.90194 1.09020 1.91600 1.37120 1.86908 1.94027 1.23623 0.96484 0.91502 0.94229 1.68068 0.98107 1.38570 1.17639 1.23335 0.96071 0.89248 0.96957 1.48411 1.52842 1.29247 1.03624 1.19559 0.79672 0.84370 0.82996 1.90687 1.40978 1.28657 1.83605 1.23150 1.04028 1.02860 0.95094 1.85020 1.71790 1.41074 0.98677 1.24055 1.41291 1.15069 0.95718 0.91036 1.27802 0.95612 1.00245 0.98310 1.70861 1.31343 1.13824 1.38707 0.82674 0.75590 0.72762 0.73210 1.18910 1.19672 1.19978 0.95406 0.89074 0.91422 0.86782 0.85309 0.75271 0.77726 0.77820 0.91162 0.86942 0.88607 0.87483 0.92783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.11 71.99 0.66 -2.25 16 2 C 0.12 2.05 3.45 45.35 0.16 2.20 16 3 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.11 -0.53 6.06 31.79 0.19 -0.34 16 5 C 0.14 0.87 2.94 46.39 0.14 1.00 16 6 H 0.15 -0.13 6.71 -2.39 -0.02 -0.14 16 7 N -0.69 -7.84 5.40 -317.57 -1.72 -9.55 16 8 C 0.35 5.54 7.67 132.96 1.02 6.56 16 9 C 0.03 0.47 10.40 84.90 0.88 1.36 16 10 N -0.45 -9.47 10.50 -195.82 -2.06 -11.53 16 11 C 0.16 3.33 8.43 84.66 0.71 4.04 16 12 F -0.12 -2.53 17.29 44.97 0.78 -1.76 16 13 C 0.10 1.80 11.20 84.69 0.95 2.75 16 14 N -0.50 -9.60 10.53 -192.40 -2.03 -11.62 16 15 C 0.07 0.90 6.38 86.86 0.55 1.46 16 16 N -0.61 -13.88 3.06 -788.03 -2.41 -16.29 16 17 C 0.55 19.90 7.66 87.66 0.67 20.57 16 18 O -0.56 -25.55 14.91 -3.03 -0.05 -25.59 16 19 C -0.10 -4.04 5.16 71.24 0.37 -3.67 16 20 S -0.19 -10.72 19.60 -56.49 -1.11 -11.83 16 21 C -0.61 -35.88 9.50 67.95 0.65 -35.23 16 22 H 0.07 3.97 7.80 -2.91 -0.02 3.94 16 23 C -0.02 -0.96 5.49 84.86 0.47 -0.49 16 24 N -0.91 -58.30 13.67 21.65 0.30 -58.01 16 25 Si 1.14 50.06 29.92 68.60 2.05 52.11 16 26 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 29 H 0.03 0.77 6.89 -2.38 -0.02 0.76 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.13 0.04 7.84 -2.39 -0.02 0.02 16 34 H 0.41 5.16 8.75 -92.71 -0.81 4.35 16 35 H 0.21 1.48 6.32 -2.91 -0.02 1.46 16 36 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 37 H 0.07 1.18 7.48 -2.39 -0.02 1.16 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 3.70 7.85 -2.40 -0.02 3.68 16 40 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 41 H 0.26 17.36 7.13 -92.70 -0.66 16.70 16 Total: -1.00 -86.47 363.31 1.55 -84.92 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.38 Total: 11.18 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: 7.41 Total: -2.03 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -7.92 Total: -107.00 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.05 Total: 52.11 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -86.47 1.55 -84.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.697 kcal (2) G-P(sol) polarization free energy of solvation -86.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds