Wall clock time and date at job start Tue Mar 31 2020 22:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87456 * 2 1 4 4 C 1.54326 * 110.00840 * 121.09899 * 2 1 3 5 5 C 1.55151 * 102.94313 * 141.68232 * 4 2 1 6 6 H 1.08998 * 111.00631 * 206.42424 * 5 4 2 7 7 N 1.46506 * 111.00678 * 82.56791 * 5 4 2 8 8 C 1.39155 * 120.00079 * 161.35311 * 7 5 4 9 9 C 1.39209 * 120.05888 * 359.72243 * 8 7 5 10 10 N 1.32008 * 119.92741 * 179.70918 * 9 8 7 11 11 C 1.32402 * 120.05943 * 0.56719 * 10 9 8 12 12 F 1.35093 * 119.94152 * 179.72896 * 11 10 9 13 13 C 1.38468 * 120.11921 * 359.71273 * 11 10 9 14 14 N 1.32216 * 120.06902 * 359.97438 * 13 11 10 15 15 C 1.54917 * 101.58025 * 324.49587 * 5 4 2 16 16 N 1.47021 * 109.88330 * 238.98206 * 2 1 3 17 17 C 1.34778 * 125.64744 * 61.51692 * 16 2 1 18 18 O 1.21280 * 119.99974 * 359.97438 * 17 16 2 19 19 C 1.50704 * 120.00087 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47046 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99883 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99998 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00203 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00011 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47108 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47199 * 120.00213 * 25 23 21 28 28 H 1.48498 * 109.47218 * 240.00055 * 25 23 21 29 29 H 1.08992 * 109.47220 * 179.56583 * 1 2 3 30 30 H 1.09005 * 109.47009 * 299.56780 * 1 2 3 31 31 H 1.08996 * 109.47006 * 59.56238 * 1 2 3 32 32 H 1.09000 * 110.72348 * 23.31222 * 4 2 1 33 33 H 1.09003 * 110.71705 * 260.04245 * 4 2 1 34 34 H 0.96995 * 119.99718 * 341.35132 * 7 5 4 35 35 H 1.08002 * 120.03760 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.96675 * 180.02562 * 13 11 10 37 37 H 1.09002 * 110.36419 * 155.85111 * 15 5 4 38 38 H 1.09001 * 110.36569 * 278.17123 * 15 5 4 39 39 H 1.09007 * 109.46927 * 300.00894 * 19 17 16 40 40 H 1.09000 * 109.46612 * 60.00404 * 19 17 16 41 41 H 0.97001 * 120.00489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2917 -1.5108 0.6895 6 1 3.4920 -2.4074 1.2760 7 7 4.4697 -0.6408 0.6453 8 6 5.7425 -1.1967 0.5600 9 6 5.8983 -2.5796 0.5224 10 7 7.1066 -3.1041 0.4357 11 6 8.1701 -2.3165 0.3958 12 9 9.4059 -2.8560 0.3126 13 6 8.0181 -0.9409 0.4389 14 7 6.8098 -0.4101 0.5195 15 6 2.8175 -1.8763 -0.7393 16 7 2.0301 -0.7124 -1.1849 17 6 1.8060 -0.3596 -2.4662 18 8 1.1401 0.6224 -2.7172 19 6 2.3831 -1.1853 -3.5871 20 16 1.9099 -0.4598 -5.1763 21 6 2.6944 -1.5919 -6.2752 22 1 3.2562 -2.4258 -5.8809 23 6 2.5895 -1.4127 -7.6475 24 7 1.9045 -0.3967 -8.1281 25 14 3.4218 -2.6126 -8.8125 26 1 4.1242 -3.6588 -8.0268 27 1 2.3993 -3.2493 -9.6810 28 1 4.4031 -1.8839 -9.6557 29 1 -0.3633 -1.0275 -0.0078 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 1.3103 -1.4471 1.6179 33 1 2.3557 -0.0451 2.0190 34 1 4.3623 0.3227 0.6754 35 1 5.0313 -3.2225 0.5590 36 1 8.8873 -0.3008 0.4058 37 1 3.6742 -2.0287 -1.3959 38 1 2.1936 -2.7698 -0.7149 39 1 3.4699 -1.2012 -3.5043 40 1 1.9989 -2.2034 -3.5233 41 1 1.8308 -0.2717 -9.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123157904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:35 Heat of formation + Delta-G solvation = -12.857066 kcal Electronic energy + Delta-G solvation = -26665.848861 eV Core-core repulsion = 22622.248206 eV Total energy + Delta-G solvation = -4043.600655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.17500 -41.44700 -40.24738 -37.89812 -35.58155 -34.43752 -32.45633 -32.31909 -31.10219 -29.08277 -28.70277 -26.32905 -25.52100 -25.35509 -23.97205 -22.64618 -21.29463 -19.13916 -18.81749 -18.32635 -18.00134 -17.70217 -16.80704 -16.53761 -16.27314 -15.50926 -15.20569 -15.08081 -14.82903 -14.69603 -14.47193 -14.19127 -13.94986 -13.82499 -13.80658 -13.23916 -12.93919 -12.65534 -12.61897 -12.27085 -12.08312 -12.02178 -11.84520 -11.66727 -11.49820 -11.09371 -11.07154 -11.02732 -10.77903 -10.67323 -9.83382 -9.62739 -9.43270 -9.09772 -8.67866 -8.27224 -8.21848 -6.53667 -6.24379 -3.95344 0.40960 0.74005 2.38596 2.79622 2.98724 3.17435 3.20184 3.24006 3.24086 3.29606 3.54328 3.83222 3.88229 4.02557 4.06675 4.18168 4.38462 4.46631 4.75305 4.79570 4.88164 4.96036 5.00516 5.10940 5.13234 5.24632 5.31248 5.34372 5.44893 5.53613 5.57489 5.82326 5.88915 5.92280 6.07374 6.16655 6.21246 6.42207 6.88185 6.91273 7.39637 7.54768 7.57770 8.32809 8.48461 9.21319 10.83109 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008399 B = 0.003470 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.758295 B = 8067.412533 C =10798.097082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.075 0.925 4 C -0.130 4.130 5 C 0.134 3.866 6 H 0.109 0.891 7 N -0.696 5.696 8 C 0.353 3.647 9 C 0.028 3.972 10 N -0.428 5.428 11 C 0.184 3.816 12 F -0.109 7.109 13 C 0.101 3.899 14 N -0.477 5.477 15 C 0.082 3.918 16 N -0.620 5.620 17 C 0.551 3.449 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.271 1.271 27 H -0.279 1.279 28 H -0.279 1.279 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.412 0.588 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.447 -3.512 24.545 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.169 4.169 5 C 0.027 3.973 6 H 0.127 0.873 7 N -0.328 5.328 8 C 0.114 3.886 9 C -0.141 4.141 10 N -0.147 5.147 11 C 0.027 3.973 12 F -0.089 7.089 13 C -0.063 4.063 14 N -0.199 5.199 15 C -0.043 4.043 16 N -0.358 5.358 17 C 0.340 3.660 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.249 0.751 35 H 0.192 0.808 36 H 0.198 0.802 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.289 -2.059 23.908 24.377 hybrid contribution 1.587 -1.726 -0.601 2.421 sum 5.876 -3.785 23.307 24.333 Atomic orbital electron populations 1.22140 0.94381 1.02449 1.03179 1.21508 0.95136 0.96372 0.83993 0.90725 1.23058 0.96078 1.00363 0.97381 1.22257 0.84458 0.94283 0.96280 0.87312 1.44412 1.00415 1.09704 1.78282 1.19359 0.87028 0.90341 0.91917 1.22933 0.94609 0.91916 1.04679 1.67567 0.98477 1.40002 1.08627 1.18779 0.81390 0.89615 1.07554 1.91624 1.36370 1.87077 1.93808 1.23303 0.95822 0.91842 0.95295 1.68024 0.97511 1.37824 1.16557 1.22869 0.96259 0.89955 0.95213 1.48532 1.53761 1.28583 1.04929 1.19996 0.79733 0.84972 0.81319 1.90702 1.38345 1.26851 1.82482 1.23515 1.03481 1.02659 1.00116 1.85384 1.69442 1.37909 0.90534 1.22889 1.38221 1.14130 0.93092 0.90938 1.24981 0.95188 0.95965 0.97343 1.70022 1.38480 1.28109 1.13640 0.86127 0.79062 0.80267 0.80126 1.19599 1.20498 1.20515 0.92409 0.91940 0.90642 0.88243 0.89068 0.75065 0.80779 0.80162 0.89924 0.89843 0.89615 0.89357 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.11 37.16 0.34 -1.31 16 2 C 0.13 1.28 3.45 -66.95 -0.23 1.05 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.13 -0.67 6.05 -24.90 -0.15 -0.82 16 5 C 0.13 0.75 2.95 -65.78 -0.19 0.56 16 6 H 0.11 0.34 6.69 -51.93 -0.35 -0.01 16 7 N -0.70 -5.17 5.40 -51.73 -0.28 -5.45 16 8 C 0.35 3.27 7.67 -154.63 -1.19 2.08 16 9 C 0.03 0.25 10.41 -17.12 -0.18 0.07 16 10 N -0.43 -4.85 10.50 -13.24 -0.14 -4.99 16 11 C 0.18 1.98 8.43 -17.22 -0.15 1.83 16 12 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 13 C 0.10 0.93 11.20 -17.30 -0.19 0.74 16 14 N -0.48 -4.96 10.53 -12.17 -0.13 -5.09 16 15 C 0.08 0.71 6.39 -2.53 -0.02 0.70 16 16 N -0.62 -7.72 3.07 -163.01 -0.50 -8.22 16 17 C 0.55 10.03 7.66 -10.98 -0.08 9.94 16 18 O -0.51 -11.20 14.89 5.56 0.08 -11.12 16 19 C -0.15 -2.96 5.16 36.01 0.19 -2.78 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 25 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 1.05 6.87 -51.93 -0.36 0.69 16 32 H 0.10 0.37 7.86 -51.93 -0.41 -0.04 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.41 3.18 8.74 -40.82 -0.36 2.83 16 35 H 0.18 1.04 6.31 -52.49 -0.33 0.71 16 36 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 37 H 0.08 0.83 7.48 -51.93 -0.39 0.44 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.66 7.85 -51.91 -0.41 1.25 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -36.15 364.62 -8.69 -44.84 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.10 Total: -0.70 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.66 Total: -0.87 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.31 Total: -49.14 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.08 Total: -11.12 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.15 -8.69 -44.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.981 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds