Wall clock time and date at job start Tue Mar 31 2020 22:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.87456 * 2 1 4 4 C 1.54326 * 110.00840 * 121.09899 * 2 1 3 5 5 C 1.55151 * 102.94313 * 141.68232 * 4 2 1 6 6 H 1.08998 * 111.00631 * 206.42424 * 5 4 2 7 7 N 1.46506 * 111.00678 * 82.56791 * 5 4 2 8 8 C 1.39155 * 120.00079 * 161.35311 * 7 5 4 9 9 C 1.39209 * 120.05888 * 359.72243 * 8 7 5 10 10 N 1.32008 * 119.92741 * 179.70918 * 9 8 7 11 11 C 1.32402 * 120.05943 * 0.56719 * 10 9 8 12 12 F 1.35093 * 119.94152 * 179.72896 * 11 10 9 13 13 C 1.38468 * 120.11921 * 359.71273 * 11 10 9 14 14 N 1.32216 * 120.06902 * 359.97438 * 13 11 10 15 15 C 1.54917 * 101.58025 * 324.49587 * 5 4 2 16 16 N 1.47021 * 109.88330 * 238.98206 * 2 1 3 17 17 C 1.34778 * 125.64744 * 61.51692 * 16 2 1 18 18 O 1.21280 * 119.99974 * 359.97438 * 17 16 2 19 19 C 1.50704 * 120.00087 * 179.97438 * 17 16 2 20 20 S 1.80997 * 109.47046 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99883 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99998 * 0.02562 * 21 20 19 23 23 C 1.38794 * 120.00203 * 179.97438 * 21 20 19 24 24 N 1.31627 * 120.00011 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00134 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47108 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47199 * 120.00213 * 25 23 21 28 28 H 1.48498 * 109.47218 * 240.00055 * 25 23 21 29 29 H 1.08992 * 109.47220 * 179.56583 * 1 2 3 30 30 H 1.09005 * 109.47009 * 299.56780 * 1 2 3 31 31 H 1.08996 * 109.47006 * 59.56238 * 1 2 3 32 32 H 1.09000 * 110.72348 * 23.31222 * 4 2 1 33 33 H 1.09003 * 110.71705 * 260.04245 * 4 2 1 34 34 H 0.96995 * 119.99718 * 341.35132 * 7 5 4 35 35 H 1.08002 * 120.03760 * 0.02562 * 9 8 7 36 36 H 1.07999 * 119.96675 * 180.02562 * 13 11 10 37 37 H 1.09002 * 110.36419 * 155.85111 * 15 5 4 38 38 H 1.09001 * 110.36569 * 278.17123 * 15 5 4 39 39 H 1.09007 * 109.46927 * 300.00894 * 19 17 16 40 40 H 1.09000 * 109.46612 * 60.00404 * 19 17 16 41 41 H 0.97001 * 120.00489 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2917 -1.5108 0.6895 6 1 3.4920 -2.4074 1.2760 7 7 4.4697 -0.6408 0.6453 8 6 5.7425 -1.1967 0.5600 9 6 5.8983 -2.5796 0.5224 10 7 7.1066 -3.1041 0.4357 11 6 8.1701 -2.3165 0.3958 12 9 9.4059 -2.8560 0.3126 13 6 8.0181 -0.9409 0.4389 14 7 6.8098 -0.4101 0.5195 15 6 2.8175 -1.8763 -0.7393 16 7 2.0301 -0.7124 -1.1849 17 6 1.8060 -0.3596 -2.4662 18 8 1.1401 0.6224 -2.7172 19 6 2.3831 -1.1853 -3.5871 20 16 1.9099 -0.4598 -5.1763 21 6 2.6944 -1.5919 -6.2752 22 1 3.2562 -2.4258 -5.8809 23 6 2.5895 -1.4127 -7.6475 24 7 1.9045 -0.3967 -8.1281 25 14 3.4218 -2.6126 -8.8125 26 1 4.1242 -3.6588 -8.0268 27 1 2.3993 -3.2493 -9.6810 28 1 4.4031 -1.8839 -9.6557 29 1 -0.3633 -1.0275 -0.0078 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5206 -0.8860 32 1 1.3103 -1.4471 1.6179 33 1 2.3557 -0.0451 2.0190 34 1 4.3623 0.3227 0.6754 35 1 5.0313 -3.2225 0.5590 36 1 8.8873 -0.3008 0.4058 37 1 3.6742 -2.0287 -1.3959 38 1 2.1936 -2.7698 -0.7149 39 1 3.4699 -1.2012 -3.5043 40 1 1.9989 -2.2034 -3.5233 41 1 1.8308 -0.2717 -9.0872 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123157904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:34 Heat of formation + Delta-G solvation = -39.286256 kcal Electronic energy + Delta-G solvation = -26666.994916 eV Core-core repulsion = 22622.248206 eV Total energy + Delta-G solvation = -4044.746711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.95307 -42.14819 -41.22719 -39.01568 -36.38059 -35.17244 -34.62540 -33.36521 -31.81651 -30.30774 -29.60232 -27.70424 -27.02954 -26.07934 -24.70256 -23.58107 -21.95858 -20.38879 -19.58516 -19.49491 -19.02772 -18.67057 -18.05249 -17.29791 -17.17705 -16.92063 -16.58725 -16.19748 -15.95749 -15.81586 -15.45223 -15.21066 -14.95356 -14.76503 -14.57981 -14.46839 -14.19285 -13.84891 -13.59098 -13.20661 -13.19380 -13.04700 -12.94201 -12.76468 -12.62422 -12.59923 -12.34016 -12.20150 -11.78474 -11.74918 -11.34301 -11.19318 -10.86664 -10.33645 -10.32317 -9.71738 -8.88602 -8.71334 -8.38606 -6.17093 -0.26935 0.00916 1.21574 1.38174 1.42212 1.54034 1.57249 1.79572 2.07147 2.23592 2.47846 2.54085 2.95734 3.17883 3.20328 3.33792 3.43557 3.44286 3.72421 3.85908 3.95235 4.09310 4.17354 4.17380 4.34659 4.36494 4.40251 4.48327 4.60161 4.69142 4.78637 4.85367 4.97104 5.13467 5.22445 5.33187 5.37660 5.52972 5.61293 6.15824 6.22923 6.23862 6.37683 6.73081 7.02900 7.14292 8.70926 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.008399 B = 0.003470 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3332.758295 B = 8067.412533 C =10798.097082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.060 0.940 4 C -0.110 4.110 5 C 0.141 3.859 6 H 0.151 0.849 7 N -0.691 5.691 8 C 0.351 3.649 9 C 0.032 3.968 10 N -0.453 5.453 11 C 0.160 3.840 12 F -0.117 7.117 13 C 0.104 3.896 14 N -0.502 5.502 15 C 0.069 3.931 16 N -0.608 5.608 17 C 0.547 3.453 18 O -0.561 6.561 19 C -0.120 4.120 20 S -0.148 6.148 21 C -0.547 4.547 22 H 0.079 0.921 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.997 3.003 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.027 0.973 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.410 0.590 35 H 0.207 0.793 36 H 0.205 0.795 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -5.709 26.991 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.022 3.978 3 H 0.079 0.921 4 C -0.148 4.148 5 C 0.035 3.965 6 H 0.169 0.831 7 N -0.322 5.322 8 C 0.110 3.890 9 C -0.138 4.138 10 N -0.172 5.172 11 C 0.004 3.996 12 F -0.097 7.097 13 C -0.058 4.058 14 N -0.224 5.224 15 C -0.055 4.055 16 N -0.343 5.343 17 C 0.335 3.665 18 O -0.439 6.439 19 C -0.271 4.271 20 S 0.079 5.921 21 C -0.695 4.695 22 H 0.097 0.903 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.182 1.182 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.047 0.953 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.247 0.753 35 H 0.223 0.777 36 H 0.222 0.778 37 H 0.088 0.912 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.788 -4.283 26.421 27.191 hybrid contribution 1.378 -1.016 -1.226 2.106 sum 6.166 -5.300 25.195 26.474 Atomic orbital electron populations 1.22093 0.94724 1.02672 1.02236 1.21813 0.94959 0.96401 0.84655 0.92137 1.23058 0.95946 1.00727 0.95099 1.22480 0.83869 0.95589 0.94552 0.83127 1.44593 1.00321 1.09960 1.77369 1.19576 0.87383 0.90657 0.91359 1.23405 0.94761 0.92158 1.03480 1.67553 0.99339 1.40871 1.09430 1.18963 0.81223 0.90260 1.09120 1.91593 1.36834 1.87236 1.94034 1.23618 0.96375 0.91599 0.94235 1.68067 0.98160 1.38505 1.17665 1.23307 0.95937 0.89410 0.96843 1.48432 1.52688 1.29500 1.03712 1.19618 0.79658 0.84274 0.82943 1.90685 1.40765 1.28844 1.83634 1.23299 1.03918 1.03091 0.96792 1.85536 1.70549 1.40212 0.95763 1.23197 1.38299 1.14210 0.93758 0.90269 1.26092 0.95662 0.97869 0.99244 1.70178 1.40017 1.30222 1.14217 0.84937 0.77995 0.77751 0.77476 1.18228 1.19595 1.19901 0.91470 0.89183 0.95344 0.85338 0.86873 0.75269 0.77704 0.77848 0.91169 0.87029 0.88816 0.87681 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.11 71.98 0.66 -2.32 16 2 C 0.12 2.10 3.45 45.34 0.16 2.26 16 3 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.11 -0.57 6.05 31.78 0.19 -0.38 16 5 C 0.14 0.91 2.95 46.38 0.14 1.05 16 6 H 0.15 -0.08 6.69 -2.39 -0.02 -0.10 16 7 N -0.69 -8.02 5.40 -317.57 -1.71 -9.74 16 8 C 0.35 5.62 7.67 132.95 1.02 6.64 16 9 C 0.03 0.48 10.41 84.90 0.88 1.37 16 10 N -0.45 -9.56 10.50 -195.82 -2.06 -11.62 16 11 C 0.16 3.34 8.43 84.66 0.71 4.05 16 12 F -0.12 -2.57 17.29 44.97 0.78 -1.79 16 13 C 0.10 1.82 11.20 84.69 0.95 2.77 16 14 N -0.50 -9.70 10.53 -192.40 -2.03 -11.72 16 15 C 0.07 0.94 6.39 86.86 0.55 1.50 16 16 N -0.61 -14.17 3.07 -788.03 -2.42 -16.59 16 17 C 0.55 20.16 7.66 87.66 0.67 20.83 16 18 O -0.56 -25.87 14.89 -3.03 -0.05 -25.91 16 19 C -0.12 -4.86 5.16 71.24 0.37 -4.49 16 20 S -0.15 -8.31 20.57 -56.49 -1.16 -9.48 16 21 C -0.55 -31.66 9.50 67.95 0.65 -31.01 16 22 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 23 C 0.02 0.94 5.49 84.86 0.47 1.40 16 24 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 25 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.80 6.87 -2.39 -0.02 0.79 16 32 H 0.13 0.09 7.86 -2.39 -0.02 0.07 16 33 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.41 5.28 8.74 -92.71 -0.81 4.47 16 35 H 0.21 1.51 6.31 -2.91 -0.02 1.49 16 36 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.07 1.20 7.48 -2.39 -0.02 1.18 16 38 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 3.61 7.85 -2.39 -0.02 3.59 16 40 H 0.10 3.85 8.14 -2.39 -0.02 3.84 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -85.02 364.62 1.35 -83.66 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.27 Total: 9.34 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 7.41 Total: 3.66 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -7.93 Total: -105.61 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.91 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.78 Total: -1.79 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.48 kcal Total: -85.02 1.35 -83.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.378 kcal (2) G-P(sol) polarization free energy of solvation -85.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds