Wall clock time and date at job start Tue Mar 31 2020 22:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.86892 * 2 1 4 4 C 1.54326 * 109.88503 * 238.98071 * 2 1 3 5 5 C 1.55154 * 102.94016 * 218.39092 * 4 2 1 6 6 H 1.09000 * 111.00387 * 277.38696 * 5 4 2 7 7 N 1.46500 * 111.00128 * 153.57345 * 5 4 2 8 8 C 1.39161 * 119.99674 * 154.99579 * 7 5 4 9 9 C 1.39204 * 120.06114 * 0.02562 * 8 7 5 10 10 N 1.32014 * 119.93043 * 179.97438 * 9 8 7 11 11 C 1.32397 * 120.05414 * 0.02562 * 10 9 8 12 12 F 1.35101 * 119.93458 * 179.97438 * 11 10 9 13 13 C 1.38462 * 120.12659 * 0.02562 * 11 10 9 14 14 N 1.32218 * 120.06751 * 359.97438 * 13 11 10 15 15 C 1.54913 * 101.58351 * 35.50115 * 5 4 2 16 16 N 1.47015 * 109.87855 * 121.17061 * 2 1 3 17 17 C 1.34778 * 125.65163 * 298.37666 * 16 2 1 18 18 O 1.21281 * 119.99701 * 0.02562 * 17 16 2 19 19 C 1.50705 * 120.00118 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.46993 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99975 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99965 * 0.02562 * 21 20 19 23 23 C 1.38793 * 119.99883 * 179.97438 * 21 20 19 24 24 N 1.31629 * 120.00711 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 119.99728 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47303 * 90.00326 * 25 23 21 27 27 H 1.48501 * 109.46843 * 209.99919 * 25 23 21 28 28 H 1.48497 * 109.46890 * 329.99805 * 25 23 21 29 29 H 1.08998 * 109.47071 * 181.01868 * 1 2 3 30 30 H 1.08993 * 109.47383 * 301.01957 * 1 2 3 31 31 H 1.09004 * 109.46893 * 61.01965 * 1 2 3 32 32 H 1.09000 * 110.71671 * 100.02690 * 4 2 1 33 33 H 1.09005 * 110.86948 * 336.82650 * 4 2 1 34 34 H 0.96997 * 120.00782 * 335.00128 * 7 5 4 35 35 H 1.07998 * 120.03425 * 0.25232 * 9 8 7 36 36 H 1.07997 * 119.96739 * 180.02562 * 13 11 10 37 37 H 1.08996 * 110.36575 * 81.83051 * 15 5 4 38 38 H 1.08992 * 110.36549 * 204.15024 * 15 5 4 39 39 H 1.09001 * 109.47285 * 299.99978 * 19 17 16 40 40 H 1.08996 * 109.47402 * 60.00499 * 19 17 16 41 41 H 0.96991 * 120.00974 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7479 -1.2437 5 6 3.2876 -1.5133 -0.6943 6 1 4.1656 -0.8681 -0.6620 7 7 3.5532 -2.7176 -1.4851 8 6 4.8370 -3.2529 -1.5277 9 6 5.8696 -2.6455 -0.8188 10 7 7.0864 -3.1558 -0.8606 11 6 7.3249 -4.2439 -1.5762 12 9 8.5711 -4.7639 -1.6176 13 6 6.2997 -4.8494 -2.2829 14 7 5.0791 -4.3425 -2.2446 15 6 2.8145 -1.8804 0.7344 16 7 2.0299 -0.7156 1.1830 17 6 1.8075 -0.3651 2.4652 18 8 1.1433 0.6174 2.7188 19 6 2.3843 -1.1941 3.5839 20 16 1.9123 -0.4719 5.1751 21 6 2.6962 -1.6074 6.2709 22 1 3.2578 -2.4403 5.8744 23 6 2.5929 -1.4308 7.6437 24 7 1.9097 -0.4148 8.1271 25 14 3.4246 -2.6342 8.8054 26 1 4.8030 -2.1663 9.0993 27 1 2.6500 -2.7173 10.0697 28 1 3.4818 -3.9755 8.1709 29 1 -0.3633 -1.0275 0.0183 30 1 -0.3634 0.5295 0.8806 31 1 -0.3633 0.4979 -0.8990 32 1 2.3530 -0.0432 -2.0201 33 1 1.3065 -1.4437 -1.6230 34 1 2.8343 -3.1418 -1.9792 35 1 5.6746 -1.7602 -0.2318 36 1 6.4970 -5.7371 -2.8655 37 1 2.1887 -2.7724 0.7092 38 1 3.6715 -2.0356 1.3896 39 1 1.9986 -2.2114 3.5183 40 1 3.4709 -1.2113 3.5004 41 1 1.8371 -0.2915 9.0864 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123157908.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:42 Heat of formation + Delta-G solvation = -37.164038 kcal Electronic energy + Delta-G solvation = -26289.217567 eV Core-core repulsion = 22244.562883 eV Total energy + Delta-G solvation = -4044.654684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.95440 -42.14365 -41.23947 -39.00508 -36.59640 -35.21950 -34.60511 -33.38001 -31.85905 -30.32920 -29.51625 -27.68209 -26.97172 -26.17612 -24.80515 -23.28753 -22.23903 -20.41235 -19.58894 -19.48184 -19.07299 -18.59934 -18.12150 -17.32412 -17.21377 -16.89983 -16.58106 -16.20440 -16.07149 -15.80948 -15.41012 -15.20469 -14.92300 -14.65261 -14.49397 -14.43293 -14.29677 -14.13939 -13.60166 -13.32585 -13.18545 -12.99512 -12.91329 -12.82055 -12.77799 -12.60475 -12.37683 -12.02009 -11.84621 -11.74900 -11.31789 -11.16144 -10.87215 -10.35169 -10.30186 -9.75197 -8.93355 -8.68857 -8.36618 -6.14746 -0.28943 -0.01051 1.21350 1.40611 1.41665 1.52280 1.55536 1.67520 2.14271 2.25555 2.47166 2.51798 2.97608 3.15741 3.19721 3.32635 3.40596 3.48694 3.68450 3.84094 3.92804 4.08906 4.09767 4.16731 4.21644 4.38400 4.41156 4.45015 4.57053 4.67670 4.74170 4.86690 4.91479 5.11305 5.21343 5.30340 5.39706 5.48393 5.55591 6.17677 6.19618 6.28147 6.33932 6.72933 7.04895 7.12517 8.72558 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.002958 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.765597 B = 9462.338057 C =12127.783251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 H 0.075 0.925 4 C -0.112 4.112 5 C 0.146 3.854 6 H 0.119 0.881 7 N -0.680 5.680 8 C 0.354 3.646 9 C 0.024 3.976 10 N -0.459 5.459 11 C 0.162 3.838 12 F -0.117 7.117 13 C 0.110 3.890 14 N -0.488 5.488 15 C 0.076 3.924 16 N -0.610 5.610 17 C 0.550 3.450 18 O -0.556 6.556 19 C -0.124 4.124 20 S -0.146 6.146 21 C -0.547 4.547 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.259 1.259 29 H 0.059 0.941 30 H 0.032 0.968 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.421 0.579 35 H 0.190 0.810 36 H 0.213 0.787 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -7.869 -27.938 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.094 0.906 4 C -0.150 4.150 5 C 0.039 3.961 6 H 0.137 0.863 7 N -0.313 5.313 8 C 0.114 3.886 9 C -0.145 4.145 10 N -0.178 5.178 11 C 0.006 3.994 12 F -0.097 7.097 13 C -0.052 4.052 14 N -0.211 5.211 15 C -0.048 4.048 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.434 6.434 19 C -0.275 4.275 20 S 0.081 5.919 21 C -0.695 4.695 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.183 1.183 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.124 0.876 34 H 0.260 0.740 35 H 0.207 0.793 36 H 0.229 0.771 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.012 -6.188 -27.272 28.252 hybrid contribution 1.102 -1.724 0.935 2.250 sum 5.114 -7.911 -26.337 27.971 Atomic orbital electron populations 1.22109 0.94775 1.02356 1.02589 1.21755 0.94956 0.96844 0.83752 0.90643 1.22974 0.96143 1.00094 0.95834 1.22168 1.00193 0.85442 0.88265 0.86291 1.44227 1.05943 1.28964 1.52190 1.19439 0.88205 0.89940 0.91028 1.23268 0.85897 1.02723 1.02611 1.67531 1.24118 1.09912 1.16224 1.19054 0.82688 0.95165 1.02505 1.91602 1.38575 1.84467 1.95059 1.23702 0.85651 1.00012 0.95856 1.68104 1.21369 1.11008 1.20576 1.23023 0.96136 0.88827 0.96831 1.48348 1.53022 1.29214 1.03974 1.19633 0.79583 0.84287 0.82680 1.90693 1.40561 1.28751 1.83386 1.23344 1.04658 1.02804 0.96681 1.85533 1.70726 1.39951 0.95688 1.23175 1.38294 1.14255 0.93749 0.90163 1.26088 0.95692 0.97899 0.99254 1.70166 1.40034 1.30286 1.14151 0.84992 0.78113 0.78174 0.76953 1.19286 1.20161 1.18340 0.92159 0.94831 0.88967 0.86286 0.87614 0.73955 0.79308 0.77092 0.89832 0.89936 0.88061 0.87675 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.10 71.98 0.65 -2.38 16 2 C 0.13 2.20 3.46 45.34 0.16 2.36 16 3 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.11 -0.74 6.12 31.78 0.19 -0.55 16 5 C 0.15 1.20 3.14 46.38 0.15 1.35 16 6 H 0.12 0.81 6.35 -2.39 -0.02 0.79 16 7 N -0.68 -5.35 5.38 -317.58 -1.71 -7.05 16 8 C 0.35 4.65 7.67 132.95 1.02 5.67 16 9 C 0.02 0.38 10.40 84.90 0.88 1.26 16 10 N -0.46 -9.65 10.50 -195.82 -2.06 -11.70 16 11 C 0.16 3.02 8.43 84.66 0.71 3.74 16 12 F -0.12 -2.34 17.29 44.97 0.78 -1.56 16 13 C 0.11 1.47 11.20 84.69 0.95 2.42 16 14 N -0.49 -7.02 10.53 -192.41 -2.03 -9.05 16 15 C 0.08 1.16 6.39 86.86 0.55 1.71 16 16 N -0.61 -14.21 3.06 -788.06 -2.42 -16.62 16 17 C 0.55 19.77 7.66 87.66 0.67 20.44 16 18 O -0.56 -24.98 14.91 -3.03 -0.05 -25.03 16 19 C -0.12 -4.89 5.16 71.24 0.37 -4.52 16 20 S -0.15 -8.08 20.57 -56.49 -1.16 -9.25 16 21 C -0.55 -31.26 9.50 67.95 0.65 -30.62 16 22 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 23 C 0.02 0.89 5.49 84.86 0.47 1.36 16 24 N -0.91 -55.83 13.22 21.65 0.29 -55.54 16 25 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 28 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.03 0.94 6.90 -2.39 -0.02 0.92 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.11 0.40 7.72 -2.38 -0.02 0.38 16 34 H 0.42 2.24 8.69 -92.71 -0.81 1.43 16 35 H 0.19 2.19 6.18 -2.91 -0.02 2.17 16 36 H 0.21 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.33 7.48 -2.39 -0.02 1.31 16 39 H 0.10 3.70 8.14 -2.40 -0.02 3.68 16 40 H 0.11 3.77 7.85 -2.40 -0.02 3.76 16 41 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -81.19 364.24 1.38 -79.81 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.28 Total: 7.99 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 7.42 Total: 2.24 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -7.92 Total: -99.96 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.56 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.25 kcal Total: -81.19 1.38 -79.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123157908.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.643 kcal (2) G-P(sol) polarization free energy of solvation -81.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds